Wall clock time and date at job start Tue Mar 31 2020 06:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.52995 * 109.47049 * 190.00178 * 14 12 2 16 16 C 1.53006 * 109.47036 * 180.02562 * 15 14 12 17 17 O 1.42901 * 109.46785 * 179.97438 * 16 15 14 18 18 C 1.35906 * 116.99930 * 180.02562 * 17 16 15 19 19 C 1.38762 * 120.05172 * 359.72825 * 18 17 16 20 20 C 1.38117 * 119.93817 * 179.70424 * 19 18 17 21 21 C 1.38287 * 120.05877 * 0.58903 * 20 19 18 22 22 C 1.38241 * 120.11217 * 359.68491 * 21 20 19 23 23 S 1.76202 * 119.97345 * 179.97438 * 22 21 20 24 24 C 1.81394 * 104.45075 * 270.02055 * 23 22 21 25 25 O 1.42099 * 104.27764 * 26.09703 * 23 22 21 26 26 O 1.42107 * 104.27628 * 153.95003 * 23 22 21 27 27 C 1.38172 * 120.05329 * 0.02562 * 22 21 20 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 33 33 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 34 34 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 35 35 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 36 36 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 37 37 H 1.09007 * 109.47170 * 299.99936 * 15 14 12 38 38 H 1.08994 * 109.47290 * 60.00082 * 15 14 12 39 39 H 1.08990 * 109.47162 * 299.99719 * 16 15 14 40 40 H 1.09003 * 109.46820 * 60.00118 * 16 15 14 41 41 H 1.07999 * 120.02827 * 359.96853 * 19 18 17 42 42 H 1.08002 * 119.96856 * 180.29634 * 20 19 18 43 43 H 1.08002 * 119.94617 * 179.70306 * 21 20 19 44 44 H 1.08999 * 109.47034 * 60.00106 * 24 23 22 45 45 H 1.08993 * 109.47224 * 180.02562 * 24 23 22 46 46 H 1.09005 * 109.47179 * 300.00043 * 24 23 22 47 47 H 1.07996 * 120.02606 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3788 -0.5660 3.6186 16 6 1.9919 0.1957 4.8879 17 8 2.6735 -0.3701 6.0093 18 6 2.4384 0.1942 7.2231 19 6 1.5737 1.2741 7.3317 20 6 1.3318 1.8418 8.5673 21 6 1.9597 1.3428 9.6938 22 6 2.8259 0.2707 9.5875 23 16 3.6246 -0.3618 11.0251 24 6 5.1686 0.5836 11.1381 25 8 2.7503 -0.0183 12.0914 26 8 3.8939 -1.7204 10.7073 27 6 3.0668 -0.3047 8.3545 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7088 1.1611 -3.4845 32 1 1.8764 -2.6150 0.3648 33 1 1.9053 -2.5654 2.1441 34 1 0.4385 -2.0742 1.2640 35 1 1.9297 1.0872 2.3124 36 1 0.5722 -0.0344 2.5726 37 1 2.0978 -1.6139 3.7243 38 1 3.4553 -0.4923 3.4641 39 1 2.2726 1.2436 4.7826 40 1 0.9154 0.1215 5.0422 41 1 1.0871 1.6674 6.4515 42 1 0.6552 2.6793 8.6531 43 1 1.7729 1.7912 10.6584 44 1 4.9387 1.6448 11.2339 45 1 5.7336 0.2537 12.0098 46 1 5.7614 0.4201 10.2381 47 1 3.7432 -1.1424 8.2720 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057909547.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:08 Heat of formation + Delta-G solvation = -71.812348 kcal Electronic energy + Delta-G solvation = -26655.445520 eV Core-core repulsion = 22738.570359 eV Total energy + Delta-G solvation = -3916.875161 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.48256 -38.07479 -37.49957 -37.30956 -36.32689 -33.55508 -32.03559 -31.69288 -30.24691 -29.93327 -28.50801 -26.49953 -25.20173 -24.55485 -23.30127 -22.68268 -21.04190 -19.68457 -19.13473 -18.61288 -16.70996 -16.67616 -16.59563 -16.42283 -16.35504 -16.14420 -15.73096 -15.08599 -14.57313 -14.39158 -14.23674 -13.84018 -13.72351 -13.65144 -13.42675 -13.27815 -12.79907 -12.67298 -12.47952 -12.43378 -12.18882 -12.07736 -11.79263 -11.59283 -11.40016 -11.33787 -11.16104 -11.04656 -10.93758 -10.75881 -10.70040 -10.61377 -10.24061 -10.05964 -9.81172 -9.78131 -8.92216 -8.63853 -8.41885 -7.21309 -6.04292 -4.08067 -0.39112 0.40140 0.96547 2.40507 2.90296 3.03711 3.30750 3.34961 3.38086 3.52839 3.72455 4.29023 4.31123 4.38487 4.45050 4.56689 4.66060 4.78725 4.86736 4.87908 5.03826 5.14768 5.15131 5.27696 5.35993 5.40097 5.54405 5.60005 5.69532 5.82049 5.87912 5.96651 6.13447 6.20292 6.27425 6.38645 6.46042 6.62792 6.77325 6.87226 7.06952 7.10582 7.43685 7.67334 7.79374 8.06824 8.33211 8.55202 8.97459 9.57005 11.02840 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.031151 B = 0.001656 C = 0.001614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.629380 B =16908.437855 C =17348.751053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.534 5.534 13 C 0.031 3.969 14 C 0.059 3.941 15 C -0.115 4.115 16 C 0.059 3.941 17 O -0.309 6.309 18 C 0.120 3.880 19 C -0.157 4.157 20 C -0.098 4.098 21 C -0.070 4.070 22 C -0.623 4.623 23 S 2.502 3.498 24 C -0.649 4.649 25 O -0.937 6.937 26 O -0.934 6.934 27 C -0.061 4.061 28 H 0.031 0.969 29 H 0.006 0.994 30 H 0.088 0.912 31 H 0.261 0.739 32 H 0.073 0.927 33 H 0.044 0.956 34 H 0.018 0.982 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.142 0.858 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.134 0.866 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 3.388 27.291 27.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.204 1.204 12 N -0.258 5.258 13 C -0.117 4.117 14 C -0.070 4.070 15 C -0.153 4.153 16 C -0.016 4.016 17 O -0.222 6.222 18 C 0.073 3.927 19 C -0.176 4.176 20 C -0.117 4.117 21 C -0.089 4.089 22 C -0.709 4.709 23 S 2.681 3.319 24 C -0.799 4.799 25 O -0.934 6.934 26 O -0.931 6.931 27 C -0.080 4.080 28 H 0.050 0.950 29 H 0.025 0.975 30 H 0.107 0.893 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.036 0.964 35 H 0.086 0.914 36 H 0.045 0.955 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.160 0.840 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.153 0.847 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 4.730 2.689 27.564 28.096 hybrid contribution -0.726 0.531 -1.630 1.862 sum 4.003 3.221 25.934 26.438 Atomic orbital electron populations 1.22407 1.00888 0.99392 1.00487 1.19316 0.89734 0.94527 0.85944 0.94335 1.21079 1.30666 1.12542 0.89651 0.91939 1.24941 0.95225 0.95152 0.99055 1.69873 1.36976 1.23050 1.23533 0.86561 0.79237 0.79584 0.82013 1.21407 1.20206 1.20367 1.62313 1.59559 1.02054 1.01873 1.22289 0.97165 0.91191 1.01087 1.21864 0.96464 0.98302 0.90367 1.21596 1.02796 1.00162 0.90721 1.22976 0.96183 0.98030 0.84432 1.86127 1.66270 1.56458 1.13367 1.19086 0.94921 0.92615 0.86100 1.21701 0.99401 0.96827 0.99642 1.21111 0.99080 0.99743 0.91739 1.20823 0.94537 0.93925 0.99617 1.30410 1.14655 1.09542 1.16337 1.05160 0.76930 0.75566 0.74238 1.30213 1.21537 1.16045 1.12121 1.93590 1.62379 1.84802 1.52647 1.93609 1.85628 1.30063 1.83830 1.20166 0.99665 0.99436 0.88761 0.95039 0.97478 0.89315 0.92944 0.90800 0.93732 0.96368 0.91408 0.95472 0.90870 0.90055 0.91715 0.91997 0.84392 0.84693 0.84032 0.84887 0.84902 0.84742 0.83225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.07 8.28 37.16 0.31 -3.76 16 2 C 0.21 5.17 2.34 -68.87 -0.16 5.01 16 3 H 0.04 1.04 8.03 -51.92 -0.42 0.62 16 4 C -0.50 -13.46 7.94 -34.44 -0.27 -13.73 16 5 H 0.06 1.68 6.75 -52.49 -0.35 1.33 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.46 16 7 N -0.90 -25.09 11.32 55.43 0.63 -24.46 16 8 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.53 -11.08 4.74 -236.29 -1.12 -12.20 16 13 C 0.03 0.60 8.70 60.06 0.52 1.12 16 14 C 0.06 0.99 4.40 -3.83 -0.02 0.97 16 15 C -0.11 -1.59 5.51 -26.73 -0.15 -1.73 16 16 C 0.06 0.68 4.74 37.16 0.18 0.85 16 17 O -0.31 -3.83 10.14 -19.44 -0.20 -4.03 16 18 C 0.12 1.33 6.69 -39.22 -0.26 1.06 16 19 C -0.16 -1.47 9.04 -39.43 -0.36 -1.82 16 20 C -0.10 -0.77 10.04 -39.61 -0.40 -1.17 16 21 C -0.07 -0.55 9.47 -39.56 -0.37 -0.93 16 22 C -0.62 -5.29 5.65 -39.60 -0.22 -5.51 16 23 S 2.50 17.49 5.80 -107.50 -0.62 16.87 16 24 C -0.65 -1.81 10.80 101.05 1.09 -0.72 16 25 O -0.94 -9.16 17.12 -57.54 -0.99 -10.15 16 26 O -0.93 -9.89 17.12 -57.54 -0.99 -10.87 16 27 C -0.06 -0.61 9.41 -39.43 -0.37 -0.99 16 28 H 0.03 0.72 6.38 -51.93 -0.33 0.39 16 29 H 0.01 0.13 6.75 -51.93 -0.35 -0.22 16 30 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 31 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.07 1.52 6.53 -51.93 -0.34 1.18 16 33 H 0.04 0.73 6.30 -51.93 -0.33 0.40 16 34 H 0.02 0.35 6.28 -51.93 -0.33 0.02 16 35 H 0.07 1.12 8.00 -51.93 -0.42 0.71 16 36 H 0.03 0.45 6.94 -51.93 -0.36 0.09 16 37 H 0.07 1.03 6.47 -51.93 -0.34 0.69 16 38 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 40 H 0.06 0.65 7.67 -51.93 -0.40 0.25 16 41 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 42 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 43 H 0.14 0.83 7.57 -52.49 -0.40 0.43 16 44 H 0.13 0.16 8.14 -51.92 -0.42 -0.26 16 45 H 0.13 0.17 8.14 -51.93 -0.42 -0.25 16 46 H 0.13 0.25 8.14 -51.92 -0.42 -0.18 16 47 H 0.15 1.38 7.57 -52.49 -0.40 0.99 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -34.22 385.61 -10.12 -44.34 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -7.04 Total: -1.50 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -0.58 Total: -19.89 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: -0.49 Total: -36.66 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -2.17 Total: -25.05 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 17.49 SS G_CDS: -0.62 Total: 16.87 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.22 -10.12 -44.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057909547.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.476 kcal (2) G-P(sol) polarization free energy of solvation -34.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds