Wall clock time and date at job start Tue Mar 31 2020 05:33:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 120.00125 * 2 1 4 4 C 1.38216 * 120.00118 * 179.97438 * 3 2 1 5 5 C 1.38249 * 119.99765 * 359.76738 * 4 3 2 6 6 C 1.38216 * 120.00379 * 0.46392 * 5 4 3 7 7 C 1.50697 * 120.00354 * 179.78653 * 6 5 4 8 8 C 1.52997 * 109.47421 * 239.72591 * 7 6 5 9 9 C 1.53003 * 109.47233 * 119.72823 * 7 6 5 10 10 C 1.53001 * 109.47082 * 359.72976 * 7 6 5 11 11 N 1.46499 * 109.47093 * 180.02562 * 10 7 6 12 12 S 1.65598 * 120.00043 * 164.54323 * 11 10 7 13 13 O 1.42098 * 106.40347 * 176.39032 * 12 11 10 14 14 O 1.42095 * 106.40259 * 309.31257 * 12 11 10 15 15 N 1.65608 * 107.21737 * 62.85482 * 12 11 10 16 16 C 1.46501 * 119.99645 * 273.20618 * 15 12 11 17 17 C 1.46498 * 120.00162 * 93.20078 * 15 12 11 18 18 C 1.50703 * 109.46953 * 95.61573 * 17 15 12 19 19 H 1.08003 * 119.99714 * 4.72733 * 18 17 15 20 20 C 1.37876 * 119.99974 * 184.72882 * 18 17 15 21 21 N 1.31518 * 119.99830 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 119.99916 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47084 * 90.00488 * 22 20 18 24 24 H 1.48507 * 109.47202 * 210.00125 * 22 20 18 25 25 H 1.48501 * 109.47543 * 329.99991 * 22 20 18 26 26 C 1.38217 * 120.00089 * 179.97438 * 2 1 3 27 27 H 1.08994 * 109.47778 * 270.02253 * 1 2 3 28 28 H 1.09007 * 109.46855 * 30.02747 * 1 2 3 29 29 H 1.08998 * 109.47137 * 150.01890 * 1 2 3 30 30 H 1.08002 * 119.99833 * 359.97385 * 3 2 1 31 31 H 1.07999 * 119.99747 * 179.97438 * 4 3 2 32 32 H 1.07998 * 120.00192 * 180.25468 * 5 4 3 33 33 H 1.08997 * 109.47584 * 179.97438 * 8 7 6 34 34 H 1.09003 * 109.47347 * 300.00406 * 8 7 6 35 35 H 1.09004 * 109.46739 * 60.00121 * 8 7 6 36 36 H 1.09005 * 109.47007 * 300.00322 * 9 7 6 37 37 H 1.09001 * 109.47035 * 59.99542 * 9 7 6 38 38 H 1.08992 * 109.47399 * 180.02562 * 9 7 6 39 39 H 1.08995 * 109.47143 * 59.99778 * 10 7 6 40 40 H 1.09004 * 109.47117 * 299.99903 * 10 7 6 41 41 H 0.96999 * 120.00163 * 344.54485 * 11 10 7 42 42 H 1.08995 * 109.47683 * 89.99905 * 16 15 12 43 43 H 1.09006 * 109.46573 * 210.00144 * 16 15 12 44 44 H 1.09002 * 109.47148 * 329.99519 * 16 15 12 45 45 H 1.08995 * 109.46963 * 215.61366 * 17 15 12 46 46 H 1.08997 * 109.47094 * 335.61485 * 17 15 12 47 47 H 0.96996 * 119.99979 * 180.02562 * 21 20 18 48 48 H 1.08001 * 119.99640 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2716 0.0000 0.0059 6 6 3.5806 -1.1970 0.0011 7 6 4.3341 -2.5021 0.0021 8 6 3.9646 -3.3053 -1.2465 9 6 3.9644 -3.3035 1.2520 10 6 5.8383 -2.2225 0.0020 11 7 6.5708 -3.4912 0.0024 12 16 8.1819 -3.5173 -0.3798 13 8 8.6134 -4.8603 -0.2080 14 8 8.3153 -2.8087 -1.6042 15 7 8.9724 -2.6219 0.7674 16 6 9.1092 -1.1730 0.5995 17 6 9.5347 -3.2786 1.9500 18 6 10.9931 -3.5761 1.7136 19 1 11.4738 -3.2356 0.8084 20 6 11.7136 -4.2828 2.6530 21 7 11.1280 -4.6977 3.7551 22 14 13.5210 -4.6520 2.3597 23 1 14.3478 -3.5515 2.9168 24 1 13.8804 -5.9284 3.0283 25 1 13.7719 -4.7698 0.9007 26 6 2.1981 -1.1970 0.0005 27 1 -0.3634 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6583 2.1327 -0.0004 31 1 4.1204 2.1327 0.0001 32 1 5.3516 0.0000 0.0105 33 1 4.5099 -4.2491 -1.2460 34 1 2.8929 -3.5045 -1.2464 35 1 4.2280 -2.7344 -2.1369 36 1 4.2276 -2.7312 2.1416 37 1 2.8927 -3.5025 1.2521 38 1 4.5097 -4.2472 1.2529 39 1 6.1016 -1.6503 0.8916 40 1 6.1018 -1.6516 -0.8884 41 1 6.1121 -4.3160 0.2265 42 1 8.2568 -0.6719 1.0581 43 1 10.0290 -0.8370 1.0785 44 1 9.1439 -0.9320 -0.4630 45 1 9.4333 -2.6212 2.8134 46 1 8.9998 -4.2096 2.1375 47 1 11.6350 -5.1946 4.4161 48 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058181114.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:19 Heat of formation + Delta-G solvation = -64.934250 kcal Electronic energy + Delta-G solvation = -28362.070316 eV Core-core repulsion = 24543.212074 eV Total energy + Delta-G solvation = -3818.858243 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.22648 -37.45680 -36.53040 -35.47125 -35.12501 -33.34689 -32.68638 -32.41636 -29.82097 -27.79083 -27.62349 -27.38218 -25.75165 -25.04834 -22.88403 -22.26978 -21.66988 -19.24217 -18.92323 -17.40510 -16.77638 -16.66155 -16.44906 -15.89636 -15.31737 -14.99001 -14.79180 -14.71518 -14.25274 -14.12497 -13.99062 -13.56491 -13.41272 -13.26236 -13.14955 -12.86928 -12.52565 -12.30290 -12.17154 -12.08054 -12.01069 -11.95792 -11.72319 -11.57423 -11.43543 -11.34852 -11.18791 -11.13936 -11.05215 -10.74892 -10.68377 -10.60424 -10.48874 -10.02708 -9.75112 -9.28836 -8.92391 -8.75307 -8.43502 -8.04989 -6.05437 -4.09466 1.18951 1.23262 1.26726 3.32042 3.38520 3.44116 3.54602 3.57686 4.15445 4.38636 4.43181 4.46115 4.66820 4.80769 4.81733 4.93445 5.00751 5.10512 5.12494 5.25959 5.29821 5.31406 5.42610 5.45699 5.50376 5.55073 5.59747 5.63800 5.70888 5.76851 5.80323 5.90678 5.94860 5.96629 6.02973 6.09571 6.17404 6.29188 6.37534 6.41568 6.47713 6.57078 6.85105 7.11763 7.28793 7.43282 7.64461 7.92227 8.21864 8.93076 9.55824 11.03225 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021427 B = 0.002735 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.450627 B =10235.357245 C =10455.294461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.088 4.088 3 C -0.128 4.128 4 C -0.112 4.112 5 C -0.127 4.127 6 C -0.060 4.060 7 C -0.031 4.031 8 C -0.139 4.139 9 C -0.140 4.140 10 C 0.129 3.871 11 N -1.133 6.133 12 S 2.782 3.218 13 O -0.964 6.964 14 O -0.998 6.998 15 N -0.995 5.995 16 C 0.093 3.907 17 C 0.257 3.743 18 C -0.530 4.530 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.272 1.272 26 C -0.113 4.113 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.122 0.878 32 H 0.128 0.872 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.078 0.922 41 H 0.411 0.589 42 H 0.037 0.963 43 H 0.077 0.923 44 H 0.065 0.935 45 H 0.031 0.969 46 H 0.043 0.957 47 H 0.263 0.737 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.454 9.893 -5.954 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.130 4.130 5 C -0.145 4.145 6 C -0.061 4.061 7 C -0.032 4.032 8 C -0.196 4.196 9 C -0.197 4.197 10 C 0.002 3.998 11 N -0.893 5.893 12 S 2.790 3.210 13 O -0.948 6.948 14 O -0.982 6.982 15 N -0.838 5.838 16 C -0.053 4.053 17 C 0.135 3.865 18 C -0.570 4.570 19 H 0.078 0.922 20 C -0.140 4.140 21 N -0.534 5.534 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.131 4.131 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.140 0.860 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.245 0.755 42 H 0.056 0.944 43 H 0.096 0.904 44 H 0.084 0.916 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.073 0.927 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -20.921 9.518 -6.573 23.906 hybrid contribution 0.696 -0.313 0.482 0.903 sum -20.225 9.205 -6.091 23.041 Atomic orbital electron populations 1.20781 0.91375 1.02635 1.02243 1.19879 0.95906 0.93177 0.99794 1.21009 0.94332 0.97367 1.01865 1.21138 0.94235 0.98042 0.99536 1.21225 1.00451 0.91942 1.00841 1.19705 0.93547 0.94034 0.98821 1.19666 0.93504 0.92921 0.97115 1.21888 1.01237 1.00093 0.96403 1.21901 1.01397 0.99989 0.96422 1.21366 0.91046 0.85485 1.01874 1.56297 1.30034 1.14550 1.88394 1.01919 0.72310 0.73397 0.73408 1.93642 1.79542 1.35319 1.86321 1.93520 1.86072 1.75295 1.43277 1.57587 1.69403 1.16395 1.40416 1.21378 1.01967 0.80686 1.01307 1.19057 0.93793 0.92443 0.81206 1.21501 0.95049 1.35318 1.05097 0.92175 1.24937 0.98812 0.95234 0.95036 1.69918 1.36563 1.37954 1.08966 0.86514 0.84721 0.77739 0.78578 1.20616 1.21048 1.19724 1.20805 0.93396 0.97461 1.01459 0.91261 0.91671 0.91643 0.86390 0.85991 0.85458 0.91747 0.92362 0.92110 0.91938 0.92256 0.91767 0.91492 0.90390 0.75476 0.94416 0.90390 0.91623 0.95052 0.93949 0.92693 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.01 36.00 0.36 -0.35 16 2 C -0.09 -0.76 5.88 -104.62 -0.62 -1.38 16 3 C -0.13 -1.11 9.70 -39.58 -0.38 -1.50 16 4 C -0.11 -1.03 10.05 -39.59 -0.40 -1.43 16 5 C -0.13 -1.29 8.98 -39.59 -0.36 -1.65 16 6 C -0.06 -0.61 4.76 -104.63 -0.50 -1.11 16 7 C -0.03 -0.31 0.62 -155.66 -0.10 -0.41 16 8 C -0.14 -1.36 8.12 37.16 0.30 -1.06 16 9 C -0.14 -1.35 8.12 37.16 0.30 -1.05 16 10 C 0.13 1.58 3.81 -4.04 -0.02 1.56 16 11 N -1.13 -16.39 5.38 -10.61 -0.06 -16.45 16 12 S 2.78 54.69 6.09 -107.50 -0.65 54.04 16 13 O -0.96 -23.09 16.99 -57.17 -0.97 -24.06 16 14 O -1.00 -20.71 16.34 -57.17 -0.93 -21.64 16 15 N -1.00 -20.40 3.23 -123.05 -0.40 -20.80 16 16 C 0.09 1.56 10.69 59.85 0.64 2.20 16 17 C 0.26 6.43 5.10 -5.19 -0.03 6.40 16 18 C -0.53 -14.93 9.38 -34.44 -0.32 -15.26 16 19 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 20 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 21 N -0.90 -26.25 13.29 55.43 0.74 -25.52 16 22 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 26 C -0.11 -1.05 8.37 -39.58 -0.33 -1.38 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 29 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 30 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.13 1.22 5.89 -52.49 -0.31 0.91 16 33 H 0.06 0.64 7.20 -51.93 -0.37 0.26 16 34 H 0.06 0.48 7.39 -51.93 -0.38 0.10 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.49 7.39 -51.93 -0.38 0.11 16 38 H 0.06 0.62 6.60 -51.93 -0.34 0.28 16 39 H 0.07 0.78 7.40 -51.93 -0.38 0.40 16 40 H 0.08 0.97 7.18 -51.93 -0.37 0.59 16 41 H 0.41 5.29 6.49 -34.47 -0.22 5.07 16 42 H 0.04 0.51 8.04 -51.93 -0.42 0.09 16 43 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 44 H 0.07 1.04 7.05 -51.93 -0.37 0.67 16 45 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 46 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.12 0.95 7.10 -52.49 -0.37 0.58 16 LS Contribution 395.45 15.07 5.96 5.96 Total: -1.00 -34.26 395.45 -10.53 -44.79 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.66 Total: 1.47 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -1.54 Total: -14.73 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: 0.28 Total: -62.77 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.91 Total: -45.70 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 54.69 SS G_CDS: -0.65 Total: 54.04 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.26 -10.53 -44.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058181114.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.140 kcal (2) G-P(sol) polarization free energy of solvation -34.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds