Wall clock time and date at job start Tue Mar 31 2020 05:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 O 1.42899 * 109.47153 * 179.97438 * 8 6 5 10 10 C 1.35750 * 116.99917 * 180.02562 * 9 8 6 11 11 C 1.38962 * 119.90932 * 359.73198 * 10 9 8 12 12 C 1.37729 * 120.10124 * 179.72344 * 11 10 9 13 13 C 1.39769 * 119.89880 * 0.54974 * 12 11 10 14 14 C 1.43199 * 120.09111 * 179.70728 * 13 12 11 15 15 N 9.89547 * 142.00218 * 179.80554 * 5 1 2 16 16 C 1.39757 * 119.81283 * 359.72331 * 13 12 11 17 17 C 1.37741 * 119.90310 * 0.02562 * 16 13 12 18 18 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 19 19 C 1.46491 * 126.04623 * 179.87688 * 18 4 3 20 20 C 1.50702 * 109.46957 * 269.71277 * 19 18 4 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 19 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 19 25 25 H 1.48501 * 109.47188 * 90.00793 * 24 22 20 26 26 H 1.48501 * 109.47085 * 210.00372 * 24 22 20 27 27 H 1.48498 * 109.47634 * 330.00608 * 24 22 20 28 28 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 30 30 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 31 31 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 32 32 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 33 33 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 34 34 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 35 35 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 36 36 H 1.08001 * 119.94899 * 359.97438 * 11 10 9 37 37 H 1.07999 * 120.05709 * 180.25705 * 12 11 10 38 38 H 1.07997 * 120.04905 * 179.97438 * 16 13 12 39 39 H 1.07994 * 119.94919 * 179.97438 * 17 16 13 40 40 H 1.09004 * 109.47166 * 149.71543 * 19 18 4 41 41 H 1.08994 * 109.47507 * 29.71250 * 19 18 4 42 42 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 8 5.4372 5.1209 0.0292 10 6 6.4252 6.0519 0.0363 11 6 7.7555 5.6505 0.0462 12 6 8.7610 6.5917 0.0477 13 6 8.4417 7.9524 0.0508 14 6 9.4838 8.9344 0.0587 15 7 10.3105 9.7135 0.0658 16 6 7.1024 8.3517 0.0466 17 6 6.1031 7.4037 0.0399 18 7 3.6093 -0.6405 0.0013 19 6 4.7870 -1.5116 0.0026 20 6 5.1921 -1.8109 -1.4178 21 1 4.6288 -1.3935 -2.2393 22 6 6.2856 -2.6124 -1.6685 23 7 6.9718 -3.1203 -0.6681 24 14 6.7923 -2.9770 -3.4290 25 1 7.7551 -1.9451 -3.8909 26 1 7.4328 -4.3153 -3.4927 27 1 5.5920 -2.9606 -4.3032 28 7 2.2731 -1.0608 0.0005 29 1 -0.3634 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3633 -0.8901 -0.5136 32 1 1.9901 2.1596 -0.0009 33 1 5.6359 1.1294 0.0155 34 1 6.4297 3.5415 0.9182 35 1 6.4372 3.5481 -0.8617 36 1 8.0014 4.5988 0.0486 37 1 9.7947 6.2789 0.0512 38 1 6.8513 9.4021 0.0495 39 1 5.0680 7.7115 0.0371 40 1 4.5494 -2.4431 0.5166 41 1 5.6079 -1.0120 0.5169 42 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058191224.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:55 Heat of formation + Delta-G solvation = 65.367512 kcal Electronic energy + Delta-G solvation = -27259.768042 eV Core-core repulsion = 23207.575813 eV Total energy + Delta-G solvation = -4052.192229 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.13277 -40.65017 -39.31369 -38.09782 -36.42989 -34.89357 -33.86109 -32.17328 -31.81729 -31.10563 -29.72937 -28.99331 -27.61366 -26.10903 -23.86868 -23.54915 -22.92137 -21.60566 -19.91961 -19.56432 -19.26343 -18.60512 -17.31070 -16.90046 -16.74779 -16.39540 -16.18598 -15.19360 -15.03654 -14.98131 -14.57816 -14.37208 -14.30795 -14.11042 -14.01400 -13.97179 -13.38569 -12.97499 -12.85619 -12.80635 -12.72148 -12.57348 -12.51380 -12.11508 -11.85230 -11.65041 -11.45100 -11.41193 -11.15251 -10.95765 -10.53014 -10.41050 -10.04660 -9.88490 -9.62521 -9.61910 -8.79707 -8.72557 -8.01649 -7.55797 -6.41041 -4.49796 0.38847 0.80117 2.03584 2.05424 2.33440 2.54942 2.93872 3.09759 3.10055 3.18631 3.24586 3.43719 3.49250 3.54407 3.70738 4.15441 4.18316 4.30439 4.41291 4.56716 4.66503 4.68683 4.92412 4.92656 5.03817 5.28809 5.44166 5.51760 5.55782 5.73209 5.83444 5.98249 6.02914 6.06914 6.09339 6.16988 6.30659 6.55783 6.73773 6.79767 6.96103 7.15553 7.37531 7.46655 7.53072 7.71298 7.77623 8.10829 8.53138 8.62364 9.18249 10.65995 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009972 B = 0.002524 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.072827 B =11089.735086 C =13436.384500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.292 4.292 4 C 0.300 3.700 5 N -0.635 5.635 6 C 0.521 3.479 7 O -0.491 6.491 8 C 0.043 3.957 9 O -0.281 6.281 10 C 0.166 3.834 11 C -0.214 4.214 12 C -0.025 4.025 13 C -0.076 4.076 14 C 0.260 3.740 15 N -0.426 5.426 16 C -0.028 4.028 17 C -0.149 4.149 18 N -0.343 5.343 19 C 0.256 3.744 20 C -0.541 4.541 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.271 1.271 28 N -0.282 5.282 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.162 0.838 33 H 0.418 0.582 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.143 0.857 37 H 0.137 0.863 38 H 0.140 0.860 39 H 0.145 0.855 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.347 17.034 2.931 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.113 4.113 3 C -0.324 4.324 4 C 0.078 3.922 5 N -0.283 5.283 6 C 0.305 3.695 7 O -0.362 6.362 8 C -0.035 4.035 9 O -0.192 6.192 10 C 0.118 3.882 11 C -0.233 4.233 12 C -0.045 4.045 13 C -0.080 4.080 14 C -0.055 4.055 15 N -0.102 5.102 16 C -0.049 4.049 17 C -0.168 4.168 18 N -0.128 5.128 19 C 0.138 3.862 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.196 1.196 28 N -0.108 5.108 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.179 0.821 33 H 0.255 0.745 34 H 0.121 0.879 35 H 0.123 0.877 36 H 0.160 0.840 37 H 0.155 0.845 38 H 0.158 0.842 39 H 0.163 0.837 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.968 17.175 2.993 17.461 hybrid contribution 1.013 -0.274 -0.964 1.424 sum 1.980 16.901 2.029 17.138 Atomic orbital electron populations 1.20029 0.87488 1.02531 1.02114 1.22045 0.96587 0.90968 1.01750 1.21287 0.89030 1.00530 1.21551 1.17817 0.87640 0.83348 1.03421 1.42463 1.08697 1.04964 1.72205 1.19781 0.90562 0.81532 0.77612 1.90704 1.26170 1.73433 1.45922 1.22469 0.95802 0.80182 1.05068 1.86138 1.31740 1.13984 1.87309 1.19349 0.87064 0.89454 0.92320 1.21277 0.91457 1.01166 1.09356 1.20969 0.99917 0.90362 0.93265 1.15928 0.89384 0.89936 1.12720 1.25651 0.93162 0.93244 0.93412 1.81273 1.09756 1.09545 1.09634 1.20976 0.89936 0.99997 0.93976 1.20391 1.01008 0.89051 1.06344 1.49376 1.06619 1.02038 1.54762 1.19641 0.77754 0.89818 0.98979 1.21336 1.13118 1.32204 0.91310 0.91660 1.24938 0.95716 0.94827 0.98198 1.69914 1.19031 1.32692 1.31067 0.86354 0.78841 0.77924 0.83610 1.20312 1.20760 1.19592 1.77385 0.86056 1.21745 1.25565 0.91306 0.91065 0.91449 0.82084 0.74513 0.87866 0.87727 0.83967 0.84508 0.84180 0.83678 0.92460 0.93797 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.89 10.44 36.00 0.38 -0.52 16 2 C 0.05 0.99 7.21 -82.44 -0.59 0.39 16 3 C -0.29 -5.67 9.58 -39.78 -0.38 -6.05 16 4 C 0.30 5.89 7.66 -153.16 -1.17 4.72 16 5 N -0.63 -9.69 5.41 -11.46 -0.06 -9.75 16 6 C 0.52 7.11 7.87 -10.98 -0.09 7.03 16 7 O -0.49 -8.39 13.63 -14.36 -0.20 -8.58 16 8 C 0.04 0.38 5.21 36.01 0.19 0.57 16 9 O -0.28 -2.86 9.66 -38.87 -0.38 -3.23 16 10 C 0.17 1.32 6.69 -39.04 -0.26 1.06 16 11 C -0.21 -1.35 9.01 -39.50 -0.36 -1.70 16 12 C -0.02 -0.15 9.75 -39.20 -0.38 -0.53 16 13 C -0.08 -0.52 5.74 -106.83 -0.61 -1.13 16 14 C 0.26 2.29 15.33 -22.47 -0.34 1.94 16 15 N -0.43 -4.84 18.54 41.84 0.78 -4.06 16 16 C -0.03 -0.17 9.75 -39.20 -0.38 -0.55 16 17 C -0.15 -1.02 9.97 -39.49 -0.39 -1.42 16 18 N -0.34 -7.60 3.60 -61.58 -0.22 -7.82 16 19 C 0.26 6.04 6.01 -5.20 -0.03 6.01 16 20 C -0.54 -13.85 9.39 -34.44 -0.32 -14.17 16 21 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 22 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -23.31 13.29 55.43 0.74 -22.57 16 24 Si 0.91 19.85 29.54 -169.99 -5.02 14.83 16 25 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 N -0.28 -6.31 12.56 33.65 0.42 -5.89 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.16 3.05 5.83 -52.49 -0.31 2.74 16 33 H 0.42 5.57 7.96 -40.82 -0.32 5.24 16 34 H 0.10 0.60 7.64 -51.93 -0.40 0.20 16 35 H 0.10 0.67 7.66 -51.93 -0.40 0.27 16 36 H 0.14 0.63 6.28 -52.49 -0.33 0.30 16 37 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.15 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.04 0.98 7.49 -51.93 -0.39 0.59 16 42 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -33.08 378.34 -7.74 -40.82 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -4.65 Total: 3.29 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -4.86 Total: -2.74 kcal Atomic # 7 Polarization: -51.75 SS G_CDS: 1.65 Total: -50.10 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: -0.57 Total: -11.82 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.08 -7.74 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058191224.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.192 kcal (2) G-P(sol) polarization free energy of solvation -33.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds