Wall clock time and date at job start Tue Mar 31 2020 04:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38132 * 120.03342 * 2 1 4 4 C 1.38263 * 120.06620 * 180.25212 * 3 2 1 5 5 C 1.38303 * 120.13932 * 359.45404 * 4 3 2 6 6 C 1.38095 * 120.06839 * 0.54771 * 5 4 3 7 7 C 1.38838 * 120.03337 * 179.97438 * 2 1 3 8 8 N 1.40113 * 120.07014 * 359.97438 * 7 2 1 9 9 N 1.28475 * 124.95891 * 47.62246 * 8 7 2 10 10 C 1.31883 * 110.10931 * 179.83102 * 9 8 7 11 11 C 1.47664 * 126.49774 * 180.17819 * 10 9 8 12 12 O 1.21580 * 120.00033 * 174.64376 * 11 10 9 13 13 N 1.34774 * 119.99942 * 354.63932 * 11 10 9 14 14 C 1.46498 * 120.00045 * 354.46079 * 13 11 10 15 15 C 1.46501 * 120.00283 * 174.45472 * 13 11 10 16 16 C 1.50703 * 109.47017 * 90.00112 * 15 13 11 17 17 H 1.08004 * 119.99705 * 0.02562 * 16 15 13 18 18 C 1.37871 * 120.00286 * 180.02562 * 16 15 13 19 19 N 1.31515 * 120.00170 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99882 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47011 * 90.00396 * 20 18 16 22 22 H 1.48503 * 109.47193 * 209.99737 * 20 18 16 23 23 H 1.48495 * 109.47358 * 330.00008 * 20 18 16 24 24 C 1.41425 * 107.00755 * 0.42737 * 10 9 8 25 25 C 1.35038 * 105.81326 * 359.73576 * 24 10 9 26 26 C 1.51216 * 110.17342 * 180.02562 * 25 24 10 27 27 C 1.54496 * 105.04129 * 343.15668 * 26 25 24 28 28 C 1.50952 * 143.67389 * 179.73014 * 24 10 9 29 29 H 1.08998 * 109.47180 * 88.19215 * 1 2 3 30 30 H 1.08997 * 109.46734 * 208.19243 * 1 2 3 31 31 H 1.09002 * 109.46853 * 328.18805 * 1 2 3 32 32 H 1.07998 * 119.96865 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.92894 * 179.70367 * 4 3 2 34 34 H 1.08003 * 119.97033 * 180.27296 * 5 4 3 35 35 H 1.07998 * 120.03942 * 179.74211 * 6 5 4 36 36 H 1.09003 * 109.47348 * 85.46665 * 14 13 11 37 37 H 1.09000 * 109.47138 * 205.46716 * 14 13 11 38 38 H 1.08995 * 109.47071 * 325.46517 * 14 13 11 39 39 H 1.08993 * 109.47847 * 210.00331 * 15 13 11 40 40 H 1.09005 * 109.47159 * 330.00639 * 15 13 11 41 41 H 0.97002 * 120.00262 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.32460 * 102.05652 * 26 25 24 43 43 H 1.08992 * 110.32925 * 224.27507 * 26 25 24 44 44 H 1.09007 * 110.93644 * 267.36231 * 27 26 25 45 45 H 1.08996 * 110.95960 * 143.70912 * 27 26 25 46 46 H 1.09005 * 110.34191 * 315.65086 * 28 24 10 47 47 H 1.09003 * 110.33842 * 77.79795 * 28 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1966 -0.0053 5 6 4.2762 0.0010 0.0009 6 6 3.5908 -1.1978 0.0008 7 6 2.2019 -1.2020 0.0005 8 7 1.5036 -2.4166 0.0016 9 7 0.5211 -2.7016 -0.7756 10 6 0.0856 -3.9215 -0.5274 11 6 -1.0252 -4.6136 -1.2112 12 8 -1.2664 -5.7772 -0.9542 13 7 -1.7717 -3.9554 -2.1200 14 6 -1.5609 -2.5227 -2.3417 15 6 -2.7937 -4.6727 -2.8863 16 6 -4.1049 -4.6220 -2.1452 17 1 -4.1704 -4.1067 -1.1983 18 6 -5.2209 -5.2335 -2.6759 19 7 -6.3653 -5.1888 -2.0293 20 14 -5.1074 -6.1253 -4.3133 21 1 -4.7461 -7.5466 -4.0788 22 1 -6.4188 -6.0560 -5.0067 23 1 -4.0673 -5.4826 -5.1560 24 6 0.8804 -4.4390 0.5217 25 6 1.7630 -3.4645 0.8298 26 6 2.6706 -3.9183 1.9509 27 6 1.9538 -5.1338 2.5800 28 6 1.0987 -5.6473 1.3998 29 1 -0.3633 0.0324 -1.0271 30 1 -0.3633 -0.9057 0.4855 31 1 -0.3633 0.8733 0.5417 32 1 1.6584 2.1312 -0.0004 33 1 4.1193 2.1330 -0.0101 34 1 5.3562 0.0049 0.0012 35 1 4.1341 -2.1312 0.0014 36 1 -0.7573 -2.3812 -3.0644 37 1 -2.4779 -2.0758 -2.7259 38 1 -1.2909 -2.0452 -1.3999 39 1 -2.9105 -4.2045 -3.8636 40 1 -2.4891 -5.7113 -3.0151 41 1 -7.1505 -5.6187 -2.4029 42 1 3.6421 -4.2145 1.5553 43 1 2.7873 -3.1244 2.6885 44 1 1.3224 -4.8253 3.4133 45 1 2.6726 -5.8890 2.8974 46 1 0.1444 -6.0299 1.7619 47 1 1.6334 -6.4226 0.8512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058201608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:39 Heat of formation + Delta-G solvation = 98.390074 kcal Electronic energy + Delta-G solvation = -29614.863260 eV Core-core repulsion = 25765.362002 eV Total energy + Delta-G solvation = -3849.501258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.02660 -39.66776 -38.57809 -36.91694 -34.79932 -33.66186 -33.02682 -32.39088 -29.98090 -28.82876 -28.42819 -27.69887 -27.04761 -25.80693 -24.21241 -22.85716 -21.97654 -21.80207 -20.50109 -19.89942 -18.37373 -17.71566 -16.91041 -16.67358 -16.24721 -16.05427 -15.54909 -15.17617 -14.76706 -14.55335 -14.35987 -13.98453 -13.58748 -13.49661 -13.39694 -13.15784 -12.98017 -12.83126 -12.55055 -12.41472 -12.29088 -12.20041 -12.00721 -11.78683 -11.61770 -11.56075 -11.33630 -11.22216 -11.16490 -10.90492 -10.48051 -10.36293 -10.11009 -9.75989 -9.48206 -9.18663 -9.17040 -8.68589 -8.52664 -8.39807 -7.58976 -6.02210 -4.00406 0.62771 0.91895 1.89237 2.24746 2.27922 3.26353 3.34234 3.40072 3.42021 3.83484 4.01730 4.10722 4.38804 4.42826 4.45425 4.54667 4.61922 4.75792 4.87687 4.89100 5.03910 5.05925 5.13518 5.28807 5.34556 5.40259 5.43424 5.52383 5.54396 5.61598 5.69513 5.80685 5.89253 5.91843 5.99641 6.02415 6.04289 6.13327 6.13849 6.14803 6.20834 6.33299 6.46473 6.54570 6.78081 6.97916 7.04208 7.43153 7.66984 7.98565 8.33013 8.53466 8.99105 9.05042 9.57979 11.11321 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.003352 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.685551 B = 8350.967685 C = 9705.159176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.061 4.061 3 C -0.109 4.109 4 C -0.109 4.109 5 C -0.113 4.113 6 C -0.107 4.107 7 C 0.129 3.871 8 N -0.229 5.229 9 N -0.244 5.244 10 C 0.028 3.972 11 C 0.588 3.412 12 O -0.527 6.527 13 N -0.583 5.583 14 C 0.088 3.912 15 C 0.217 3.783 16 C -0.525 4.525 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.153 4.153 25 C -0.025 4.025 26 C -0.033 4.033 27 C -0.115 4.115 28 C -0.047 4.047 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.133 0.867 33 H 0.129 0.871 34 H 0.132 0.868 35 H 0.130 0.870 36 H 0.045 0.955 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.032 0.968 40 H 0.036 0.964 41 H 0.264 0.736 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.494 12.349 7.446 28.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.063 4.063 3 C -0.127 4.127 4 C -0.128 4.128 5 C -0.132 4.132 6 C -0.128 4.128 7 C 0.039 3.961 8 N -0.010 5.010 9 N -0.076 5.076 10 C -0.133 4.133 11 C 0.372 3.628 12 O -0.401 6.401 13 N -0.314 5.314 14 C -0.056 4.056 15 C 0.096 3.904 16 C -0.564 4.564 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.702 3.298 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.163 4.163 25 C -0.147 4.147 26 C -0.072 4.072 27 C -0.153 4.153 28 C -0.085 4.085 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.101 0.899 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 23.972 12.656 6.841 27.958 hybrid contribution -0.003 -0.898 -0.520 1.038 sum 23.969 11.758 6.320 27.436 Atomic orbital electron populations 1.20885 0.89716 1.03089 1.03671 1.19944 0.97192 0.91228 0.97900 1.21005 0.94212 0.97130 1.00384 1.21280 0.94218 0.98387 0.98894 1.20982 1.00173 0.91447 1.00553 1.21027 0.91569 0.99547 1.00613 1.17441 0.90427 0.82517 1.05695 1.42115 1.23671 1.10208 1.24993 1.74158 1.01923 1.15973 1.15499 1.21844 1.00389 0.91300 0.99779 1.16875 0.80451 0.85809 0.79673 1.90767 1.69747 1.16323 1.63309 1.47691 1.35688 1.09573 1.38434 1.21833 1.00692 0.81335 1.01730 1.19716 0.86794 0.92772 0.91087 1.21330 0.91736 1.35410 1.07903 0.90685 1.24848 0.95151 0.95634 0.97376 1.69901 1.00440 1.44541 1.38834 0.86859 0.77560 0.81054 0.84285 1.19866 1.21095 1.19042 1.20872 0.97845 0.98058 0.99529 1.22204 1.03487 0.88828 1.00190 1.20595 0.96304 0.97813 0.92488 1.22440 0.98762 0.96221 0.97829 1.20405 1.00896 0.93886 0.93321 0.89646 0.91200 0.91172 0.84885 0.85274 0.85011 0.85230 0.93690 0.91092 0.90788 0.94984 0.94565 0.92623 0.89923 0.90722 0.90505 0.89853 0.89895 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 8.64 36.01 0.31 -1.02 16 2 C -0.06 -0.66 5.89 -104.44 -0.62 -1.28 16 3 C -0.11 -0.89 9.70 -39.61 -0.38 -1.28 16 4 C -0.11 -0.75 10.04 -39.55 -0.40 -1.15 16 5 C -0.11 -0.81 10.04 -39.61 -0.40 -1.21 16 6 C -0.11 -1.01 9.61 -39.40 -0.38 -1.39 16 7 C 0.13 1.55 6.12 -83.61 -0.51 1.04 16 8 N -0.23 -3.33 2.91 -6.71 -0.02 -3.35 16 9 N -0.24 -4.15 6.75 33.41 0.23 -3.92 16 10 C 0.03 0.55 6.76 -82.78 -0.56 -0.01 16 11 C 0.59 13.75 7.66 -12.41 -0.10 13.66 16 12 O -0.53 -13.99 16.57 5.30 0.09 -13.91 16 13 N -0.58 -13.47 2.86 -184.15 -0.53 -14.00 16 14 C 0.09 1.64 9.34 59.85 0.56 2.20 16 15 C 0.22 5.61 4.17 -5.19 -0.02 5.59 16 16 C -0.53 -15.70 9.94 -34.44 -0.34 -16.04 16 17 H 0.08 2.47 8.06 -52.48 -0.42 2.04 16 18 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 19 N -0.90 -28.33 13.96 55.43 0.77 -27.56 16 20 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 21 H -0.27 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 24 C -0.15 -2.56 6.82 -104.42 -0.71 -3.27 16 25 C -0.03 -0.35 7.18 -81.60 -0.59 -0.93 16 26 C -0.03 -0.31 6.78 -26.85 -0.18 -0.49 16 27 C -0.11 -1.07 7.13 -25.15 -0.18 -1.25 16 28 C -0.05 -0.63 6.78 -26.96 -0.18 -0.82 16 29 H 0.09 0.98 7.84 -51.93 -0.41 0.57 16 30 H 0.07 0.97 6.69 -51.93 -0.35 0.63 16 31 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 34 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 35 H 0.13 1.09 8.01 -52.49 -0.42 0.67 16 36 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.30 8.04 -51.93 -0.42 0.88 16 38 H 0.07 1.31 5.12 -51.93 -0.27 1.04 16 39 H 0.03 0.79 7.13 -51.93 -0.37 0.41 16 40 H 0.04 0.98 6.93 -51.93 -0.36 0.62 16 41 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 42 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 384.74 15.07 5.80 5.80 Total: -1.00 -36.51 384.74 -9.93 -46.44 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -6.83 Total: -1.32 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -4.77 Total: -5.60 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: 0.45 Total: -48.82 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.09 Total: -13.91 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.51 -9.93 -46.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.825 kcal (2) G-P(sol) polarization free energy of solvation -36.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds