Wall clock time and date at job start Tue Mar 31 2020 04:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38132 * 120.03342 * 2 1 4 4 C 1.38263 * 120.06620 * 180.25212 * 3 2 1 5 5 C 1.38303 * 120.13932 * 359.45404 * 4 3 2 6 6 C 1.38095 * 120.06839 * 0.54771 * 5 4 3 7 7 C 1.38838 * 120.03337 * 179.97438 * 2 1 3 8 8 N 1.40113 * 120.07014 * 359.97438 * 7 2 1 9 9 N 1.28475 * 124.95891 * 47.62246 * 8 7 2 10 10 C 1.31883 * 110.10931 * 179.83102 * 9 8 7 11 11 C 1.47664 * 126.49774 * 180.17819 * 10 9 8 12 12 O 1.21580 * 120.00033 * 174.64376 * 11 10 9 13 13 N 1.34774 * 119.99942 * 354.63932 * 11 10 9 14 14 C 1.46498 * 120.00045 * 354.46079 * 13 11 10 15 15 C 1.46501 * 120.00283 * 174.45472 * 13 11 10 16 16 C 1.50703 * 109.47017 * 90.00112 * 15 13 11 17 17 H 1.08004 * 119.99705 * 0.02562 * 16 15 13 18 18 C 1.37871 * 120.00286 * 180.02562 * 16 15 13 19 19 N 1.31515 * 120.00170 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99882 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47011 * 90.00396 * 20 18 16 22 22 H 1.48503 * 109.47193 * 209.99737 * 20 18 16 23 23 H 1.48495 * 109.47358 * 330.00008 * 20 18 16 24 24 C 1.41425 * 107.00755 * 0.42737 * 10 9 8 25 25 C 1.35038 * 105.81326 * 359.73576 * 24 10 9 26 26 C 1.51216 * 110.17342 * 180.02562 * 25 24 10 27 27 C 1.54496 * 105.04129 * 343.15668 * 26 25 24 28 28 C 1.50952 * 143.67389 * 179.73014 * 24 10 9 29 29 H 1.08998 * 109.47180 * 88.19215 * 1 2 3 30 30 H 1.08997 * 109.46734 * 208.19243 * 1 2 3 31 31 H 1.09002 * 109.46853 * 328.18805 * 1 2 3 32 32 H 1.07998 * 119.96865 * 359.97438 * 3 2 1 33 33 H 1.08003 * 119.92894 * 179.70367 * 4 3 2 34 34 H 1.08003 * 119.97033 * 180.27296 * 5 4 3 35 35 H 1.07998 * 120.03942 * 179.74211 * 6 5 4 36 36 H 1.09003 * 109.47348 * 85.46665 * 14 13 11 37 37 H 1.09000 * 109.47138 * 205.46716 * 14 13 11 38 38 H 1.08995 * 109.47071 * 325.46517 * 14 13 11 39 39 H 1.08993 * 109.47847 * 210.00331 * 15 13 11 40 40 H 1.09005 * 109.47159 * 330.00639 * 15 13 11 41 41 H 0.97002 * 120.00262 * 179.97438 * 19 18 16 42 42 H 1.09003 * 110.32460 * 102.05652 * 26 25 24 43 43 H 1.08992 * 110.32925 * 224.27507 * 26 25 24 44 44 H 1.09007 * 110.93644 * 267.36231 * 27 26 25 45 45 H 1.08996 * 110.95960 * 143.70912 * 27 26 25 46 46 H 1.09005 * 110.34191 * 315.65086 * 28 24 10 47 47 H 1.09003 * 110.33842 * 77.79795 * 28 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1959 0.0000 4 6 3.5810 1.1966 -0.0053 5 6 4.2762 0.0010 0.0009 6 6 3.5908 -1.1978 0.0008 7 6 2.2019 -1.2020 0.0005 8 7 1.5036 -2.4166 0.0016 9 7 0.5211 -2.7016 -0.7756 10 6 0.0856 -3.9215 -0.5274 11 6 -1.0252 -4.6136 -1.2112 12 8 -1.2664 -5.7772 -0.9542 13 7 -1.7717 -3.9554 -2.1200 14 6 -1.5609 -2.5227 -2.3417 15 6 -2.7937 -4.6727 -2.8863 16 6 -4.1049 -4.6220 -2.1452 17 1 -4.1704 -4.1067 -1.1983 18 6 -5.2209 -5.2335 -2.6759 19 7 -6.3653 -5.1888 -2.0293 20 14 -5.1074 -6.1253 -4.3133 21 1 -4.7461 -7.5466 -4.0788 22 1 -6.4188 -6.0560 -5.0067 23 1 -4.0673 -5.4826 -5.1560 24 6 0.8804 -4.4390 0.5217 25 6 1.7630 -3.4645 0.8298 26 6 2.6706 -3.9183 1.9509 27 6 1.9538 -5.1338 2.5800 28 6 1.0987 -5.6473 1.3998 29 1 -0.3633 0.0324 -1.0271 30 1 -0.3633 -0.9057 0.4855 31 1 -0.3633 0.8733 0.5417 32 1 1.6584 2.1312 -0.0004 33 1 4.1193 2.1330 -0.0101 34 1 5.3562 0.0049 0.0012 35 1 4.1341 -2.1312 0.0014 36 1 -0.7573 -2.3812 -3.0644 37 1 -2.4779 -2.0758 -2.7259 38 1 -1.2909 -2.0452 -1.3999 39 1 -2.9105 -4.2045 -3.8636 40 1 -2.4891 -5.7113 -3.0151 41 1 -7.1505 -5.6187 -2.4029 42 1 3.6421 -4.2145 1.5553 43 1 2.7873 -3.1244 2.6885 44 1 1.3224 -4.8253 3.4133 45 1 2.6726 -5.8890 2.8974 46 1 0.1444 -6.0299 1.7619 47 1 1.6334 -6.4226 0.8512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058201608.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:38 Heat of formation + Delta-G solvation = 76.429866 kcal Electronic energy + Delta-G solvation = -29615.815526 eV Core-core repulsion = 25765.362002 eV Total energy + Delta-G solvation = -3850.453524 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.18321 -40.64854 -40.14071 -37.88565 -36.70170 -34.90290 -34.41638 -33.77238 -31.18901 -30.20212 -29.81890 -28.64863 -28.09142 -27.36069 -25.74782 -23.92510 -23.41335 -22.61515 -21.58159 -21.04465 -19.94026 -19.18009 -18.64446 -17.76307 -17.67674 -17.16525 -16.78021 -16.47753 -16.25819 -15.80815 -15.41206 -15.22636 -14.89896 -14.64728 -14.51067 -14.37502 -14.28429 -14.05501 -13.92343 -13.70043 -13.66924 -13.36054 -13.18619 -13.14431 -12.97739 -12.78716 -12.47992 -12.32308 -12.25086 -12.09679 -12.08463 -11.97343 -11.77888 -11.60950 -11.10718 -10.85152 -10.72497 -9.87077 -9.71609 -9.58512 -9.34399 -8.36000 -6.42141 -0.17415 0.28311 0.60790 1.04861 1.24541 1.31522 1.36201 1.45058 2.14644 2.29832 2.36315 2.60730 2.97351 3.07903 3.38201 3.63931 3.70956 3.75320 3.97919 4.09690 4.15244 4.16982 4.31028 4.33933 4.37478 4.48521 4.56898 4.57927 4.63998 4.64636 4.71309 4.75577 4.77720 4.85467 4.89325 4.91272 4.94550 5.02743 5.11343 5.15488 5.26209 5.31607 5.37184 5.38960 5.39904 5.45874 5.54696 5.75531 6.06254 6.20219 6.49452 6.57805 6.77915 7.14174 7.27436 8.81410 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013929 B = 0.003352 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.685551 B = 8350.967685 C = 9705.159176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.079 4.079 3 C -0.110 4.110 4 C -0.097 4.097 5 C -0.105 4.105 6 C -0.108 4.108 7 C 0.087 3.913 8 N -0.216 5.216 9 N -0.245 5.245 10 C -0.016 4.016 11 C 0.581 3.419 12 O -0.576 6.576 13 N -0.593 5.593 14 C 0.092 3.908 15 C 0.226 3.774 16 C -0.539 4.539 17 H 0.023 0.977 18 C 0.012 3.988 19 N -0.944 5.944 20 Si 0.951 3.049 21 H -0.273 1.273 22 H -0.270 1.270 23 H -0.239 1.239 24 C -0.192 4.192 25 C -0.009 4.009 26 C -0.027 4.027 27 C -0.101 4.101 28 C -0.052 4.052 29 H 0.077 0.923 30 H 0.035 0.965 31 H 0.089 0.911 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.139 0.861 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.056 0.944 40 H 0.023 0.977 41 H 0.270 0.730 42 H 0.113 0.887 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.118 0.882 46 H 0.054 0.946 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.874 14.555 7.094 33.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.080 4.080 3 C -0.128 4.128 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.128 4.128 7 C -0.002 4.002 8 N 0.002 4.998 9 N -0.079 5.079 10 C -0.175 4.175 11 C 0.368 3.632 12 O -0.454 6.454 13 N -0.323 5.323 14 C -0.050 4.050 15 C 0.104 3.896 16 C -0.577 4.577 17 H 0.042 0.958 18 C -0.186 4.186 19 N -0.584 5.584 20 Si 0.773 3.227 21 H -0.198 1.198 22 H -0.195 1.195 23 H -0.162 1.162 24 C -0.202 4.202 25 C -0.132 4.132 26 C -0.065 4.065 27 C -0.139 4.139 28 C -0.091 4.091 29 H 0.096 0.904 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.172 0.828 33 H 0.182 0.818 34 H 0.184 0.816 35 H 0.157 0.843 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.131 0.869 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.136 0.864 46 H 0.073 0.927 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 28.372 14.917 6.487 32.704 hybrid contribution -1.271 -1.367 -0.289 1.888 sum 27.101 13.551 6.198 30.927 Atomic orbital electron populations 1.20806 0.90989 1.02202 1.03061 1.20023 0.96588 0.92138 0.99278 1.21296 0.95197 0.96749 0.99560 1.21746 0.93639 0.99868 0.96224 1.21419 1.01827 0.90479 0.98569 1.21240 0.90263 1.01130 1.00179 1.17903 0.91607 0.81569 1.09091 1.42418 1.22406 1.11189 1.23779 1.74004 1.02885 1.14749 1.16273 1.21349 1.01089 0.92968 1.02067 1.17459 0.81060 0.85544 0.79181 1.90700 1.71427 1.18419 1.64873 1.47798 1.35044 1.11140 1.38356 1.21954 1.01406 0.78918 1.02731 1.19450 0.85502 0.92822 0.91805 1.21479 0.94257 1.35433 1.06558 0.95842 1.25876 0.94325 0.96243 1.02121 1.70052 1.01496 1.45645 1.41227 0.85667 0.78916 0.79223 0.78867 1.19844 1.19526 1.16180 1.21326 0.98540 1.00454 0.99831 1.22946 1.02980 0.87356 0.99960 1.20837 0.96338 0.98118 0.91252 1.22465 0.98627 0.96948 0.95817 1.20542 1.00530 0.93292 0.94699 0.90436 0.94622 0.89242 0.82830 0.81792 0.81635 0.84293 0.91469 0.91008 0.90225 0.92645 0.95900 0.92090 0.86934 0.88466 0.90294 0.86388 0.92734 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 8.64 71.24 0.62 -2.01 16 2 C -0.08 -1.60 5.89 -19.74 -0.12 -1.72 16 3 C -0.11 -1.44 9.70 22.25 0.22 -1.22 16 4 C -0.10 -0.85 10.04 22.29 0.22 -0.63 16 5 C -0.10 -0.99 10.04 22.25 0.22 -0.77 16 6 C -0.11 -1.68 9.61 22.39 0.22 -1.46 16 7 C 0.09 1.95 6.12 38.12 0.23 2.19 16 8 N -0.22 -6.29 2.91 -175.16 -0.51 -6.80 16 9 N -0.25 -8.71 6.75 -48.22 -0.33 -9.04 16 10 C -0.02 -0.68 6.76 42.41 0.29 -0.40 16 11 C 0.58 29.36 7.66 86.73 0.66 30.02 16 12 O -0.58 -33.27 16.57 -3.97 -0.07 -33.34 16 13 N -0.59 -29.06 2.86 -854.78 -2.44 -31.51 16 14 C 0.09 3.60 9.34 127.77 1.19 4.79 16 15 C 0.23 12.15 4.17 85.63 0.36 12.50 16 16 C -0.54 -34.07 9.94 25.60 0.25 -33.82 16 17 H 0.02 1.66 8.06 -2.91 -0.02 1.64 16 18 C 0.01 0.77 5.47 84.65 0.46 1.23 16 19 N -0.94 -61.98 13.96 21.45 0.30 -61.68 16 20 Si 0.95 46.27 27.47 68.60 1.88 48.16 16 21 H -0.27 -13.24 7.11 99.48 0.71 -12.54 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.24 -10.49 6.54 99.48 0.65 -9.84 16 24 C -0.19 -6.71 6.82 -19.74 -0.13 -6.85 16 25 C -0.01 -0.25 7.18 41.33 0.30 0.05 16 26 C -0.03 -0.43 6.78 30.52 0.21 -0.22 16 27 C -0.10 -1.69 7.13 31.62 0.23 -1.46 16 28 C -0.05 -1.48 6.78 30.45 0.21 -1.27 16 29 H 0.08 1.84 7.84 -2.39 -0.02 1.82 16 30 H 0.03 1.05 6.69 -2.39 -0.02 1.03 16 31 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 32 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 33 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 34 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.14 1.84 8.01 -2.91 -0.02 1.81 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 37 H 0.07 2.73 8.04 -2.39 -0.02 2.71 16 38 H 0.08 3.01 5.12 -2.39 -0.01 3.00 16 39 H 0.06 2.70 7.13 -2.39 -0.02 2.69 16 40 H 0.02 1.29 6.93 -2.38 -0.02 1.27 16 41 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 42 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 45 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 46 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -88.48 384.74 5.39 -83.09 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: 0.92 Total: 12.17 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: 5.63 Total: -1.06 kcal Atomic # 7 Polarization: -106.04 SS G_CDS: -2.98 Total: -109.02 kcal Atomic # 8 Polarization: -33.27 SS G_CDS: -0.07 Total: -33.34 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 1.88 Total: 48.16 kcal Total: -88.48 5.39 -83.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058201608.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.520 kcal (2) G-P(sol) polarization free energy of solvation -88.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds