Wall clock time and date at job start Tue Mar 31 2020 05:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 119.99885 * 2 1 4 4 C 1.50697 * 109.47227 * 270.00395 * 3 2 1 5 5 H 1.08000 * 120.00128 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00137 * 179.97438 * 4 3 2 7 7 N 1.31511 * 119.99986 * 180.02562 * 6 4 3 8 8 Si 1.86799 * 119.99604 * 0.02562 * 6 4 3 9 9 H 1.48500 * 109.47066 * 90.00238 * 8 6 4 10 10 H 1.48499 * 109.46808 * 209.99857 * 8 6 4 11 11 H 1.48495 * 109.47108 * 329.99588 * 8 6 4 12 12 C 1.34777 * 119.99897 * 180.02562 * 2 1 3 13 13 O 1.21705 * 119.99826 * 183.37723 * 12 2 1 14 14 C 1.46650 * 120.00343 * 3.37700 * 12 2 1 15 15 C 1.36543 * 125.98978 * 173.22411 * 14 12 2 16 16 C 1.40371 * 106.70785 * 179.97438 * 15 14 12 17 17 C 1.35128 * 107.11241 * 359.97438 * 16 15 14 18 18 C 1.50704 * 125.61204 * 180.02562 * 17 16 15 19 19 O 1.42897 * 109.47026 * 89.99913 * 18 17 16 20 20 C 1.35713 * 117.00021 * 179.97438 * 19 18 17 21 21 C 1.38646 * 120.14496 * 0.02562 * 20 19 18 22 22 C 1.38104 * 120.09188 * 179.97438 * 21 20 19 23 23 C 1.38517 * 120.39081 * 0.02562 * 22 21 20 24 24 C 1.37822 * 120.29765 * 0.02627 * 23 22 21 25 25 C 1.39725 * 119.89886 * 359.65378 * 24 23 22 26 26 C 1.43198 * 120.19394 * 180.31897 * 25 24 23 27 27 N 7.91352 * 63.02445 * 137.64653 * 2 1 3 28 28 O 1.33925 * 108.77207 * 0.02562 * 17 16 15 29 29 H 1.09001 * 109.46687 * 264.00820 * 1 2 3 30 30 H 1.08996 * 109.47510 * 24.00668 * 1 2 3 31 31 H 1.08998 * 109.47172 * 144.01134 * 1 2 3 32 32 H 1.08999 * 109.46810 * 30.00461 * 3 2 1 33 33 H 1.08999 * 109.46893 * 150.00740 * 3 2 1 34 34 H 0.97005 * 119.99918 * 180.02562 * 7 6 4 35 35 H 1.08003 * 126.64586 * 359.96051 * 15 14 12 36 36 H 1.08000 * 126.44014 * 179.74184 * 16 15 14 37 37 H 1.08992 * 109.47218 * 209.99972 * 18 17 16 38 38 H 1.09001 * 109.46793 * 329.99806 * 18 17 16 39 39 H 1.08005 * 119.95529 * 359.97438 * 21 20 19 40 40 H 1.07992 * 119.80711 * 180.02562 * 22 21 20 41 41 H 1.08001 * 119.85595 * 180.02562 * 23 22 21 42 42 H 1.07999 * 120.05112 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4485 1.7038 -1.4208 5 1 2.0980 1.0959 -2.2417 6 6 3.1258 2.8781 -1.6727 7 7 3.3445 3.2580 -2.9126 8 14 3.7328 3.9292 -0.2528 9 1 5.1064 3.5082 0.1229 10 1 3.7475 5.3560 -0.6643 11 1 2.8269 3.7592 0.9115 12 6 2.1388 -1.1672 -0.0005 13 8 3.3543 -1.1681 0.0616 14 6 1.4076 -2.4361 -0.0759 15 6 1.9634 -3.6755 -0.2152 16 6 0.9016 -4.5933 -0.2416 17 6 -0.2412 -3.8829 -0.1182 18 6 -1.6340 -4.4581 -0.0960 19 8 -2.0036 -4.7592 1.2511 20 6 -3.2379 -5.2879 1.4478 21 6 -4.0785 -5.5142 0.3687 22 6 -5.3341 -6.0529 0.5701 23 6 -5.7637 -6.3703 1.8482 24 6 -4.9417 -6.1511 2.9325 25 6 -3.6664 -5.6129 2.7422 26 6 -2.8045 -5.3889 3.8636 27 7 -2.1247 -5.2118 4.7513 28 8 0.0677 -2.5836 -0.0188 29 1 -0.3633 -0.1073 1.0221 30 1 -0.3634 0.9387 -0.4181 31 1 -0.3633 -0.8315 -0.6039 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5137 34 1 3.8213 4.0840 -3.0899 35 1 3.0160 -3.9051 -0.2907 36 1 0.9827 -5.6653 -0.3451 37 1 -2.3334 -3.7326 -0.5112 38 1 -1.6599 -5.3701 -0.6924 39 1 -3.7509 -5.2690 -0.6308 40 1 -5.9849 -6.2276 -0.2737 41 1 -6.7472 -6.7915 1.9957 42 1 -5.2808 -6.3997 3.9273 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058213946.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:47 Heat of formation + Delta-G solvation = 19.756655 kcal Electronic energy + Delta-G solvation = -27636.843122 eV Core-core repulsion = 23550.380307 eV Total energy + Delta-G solvation = -4086.462815 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.77217 -40.83892 -38.89842 -38.17032 -36.68018 -35.21985 -33.25248 -32.56858 -32.16841 -31.56094 -30.30346 -28.80557 -27.02673 -25.90970 -24.41328 -23.40059 -22.68295 -21.68280 -21.04891 -19.75192 -19.51441 -18.29201 -17.27887 -17.03094 -16.77225 -16.44391 -16.26126 -15.67259 -15.56974 -15.35138 -14.86825 -14.50582 -14.25490 -14.03958 -13.63627 -13.53357 -13.42618 -13.17543 -13.06419 -12.95613 -12.88454 -12.54714 -12.48872 -12.36075 -12.11774 -11.91102 -11.70895 -11.58292 -11.44274 -10.95759 -10.56300 -10.20814 -10.03882 -9.70598 -9.60323 -9.48556 -8.84707 -8.68720 -8.63208 -7.83256 -6.13053 -4.13049 0.28975 0.77634 0.99335 2.06080 2.48014 2.49864 2.60694 2.99141 3.27500 3.33395 3.35636 3.42732 3.54169 3.56621 3.73381 4.13235 4.27862 4.36175 4.37634 4.48838 4.56281 4.71473 4.74166 4.86813 4.90010 4.97977 5.19167 5.20187 5.54228 5.55349 5.63507 5.65645 5.76349 5.80033 5.83736 5.87229 6.04514 6.22231 6.31596 6.58427 6.66746 6.81595 6.90234 7.18155 7.28638 7.53213 8.02160 8.38506 8.66971 8.89665 9.45992 10.99991 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.002200 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.221823 B =12723.904610 C =12778.300242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.582 5.582 3 C 0.214 3.786 4 C -0.533 4.533 5 H 0.076 0.924 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.876 3.124 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.265 1.265 12 C 0.587 3.413 13 O -0.516 6.516 14 C -0.030 4.030 15 C -0.143 4.143 16 C -0.174 4.174 17 C -0.028 4.028 18 C 0.144 3.856 19 O -0.303 6.303 20 C 0.180 3.820 21 C -0.211 4.211 22 C -0.047 4.047 23 C -0.160 4.160 24 C -0.032 4.032 25 C -0.062 4.062 26 C 0.259 3.741 27 N -0.412 5.412 28 O -0.146 6.146 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.163 0.837 36 H 0.156 0.844 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.141 0.859 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.865 -22.148 5.721 31.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.312 5.312 3 C 0.094 3.906 4 C -0.572 4.572 5 H 0.094 0.906 6 C -0.129 4.129 7 N -0.533 5.533 8 Si 0.703 3.297 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.372 3.628 13 O -0.394 6.394 14 C -0.083 4.083 15 C -0.163 4.163 16 C -0.193 4.193 17 C -0.080 4.080 18 C 0.069 3.931 19 O -0.215 6.215 20 C 0.131 3.869 21 C -0.230 4.230 22 C -0.066 4.066 23 C -0.178 4.178 24 C -0.052 4.052 25 C -0.066 4.066 26 C -0.057 4.057 27 N -0.087 5.087 28 O -0.042 6.042 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.181 0.819 36 H 0.174 0.826 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.159 0.841 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.128 -21.354 7.183 30.212 hybrid contribution 0.091 0.443 -0.106 0.464 sum -20.037 -20.912 7.076 29.814 Atomic orbital electron populations 1.21890 0.80087 1.03446 1.00997 1.47806 1.06918 1.06800 1.69655 1.19813 0.92641 0.79369 0.98783 1.21287 1.37477 1.07418 0.90987 0.90629 1.24845 0.95099 0.97262 0.95675 1.69891 1.41184 1.23541 1.18661 0.86847 0.80231 0.79787 0.82849 1.19762 1.20947 1.18985 1.16635 0.86306 0.81108 0.78731 1.90862 1.11812 1.85566 1.51190 1.22748 0.79584 0.97225 1.08709 1.21937 1.01210 0.90368 1.02810 1.21599 0.90945 1.00832 1.05962 1.21822 0.95456 0.82269 1.08438 1.20994 0.89831 1.00274 0.81953 1.86197 1.29435 1.76146 1.29740 1.18927 0.84218 0.91137 0.92581 1.21273 0.96065 1.07339 0.98336 1.21223 0.94521 0.93202 0.97651 1.21031 1.00834 1.03886 0.92038 1.21069 0.90210 0.93706 1.00263 1.15344 0.94167 1.11022 0.86054 1.25172 0.93494 0.94013 0.93015 1.81092 1.08289 1.08382 1.10950 1.84305 1.24218 1.25882 1.69842 0.93239 0.89965 0.91057 0.94629 0.94080 0.92445 0.81947 0.82615 0.89235 0.88000 0.84118 0.84735 0.84666 0.84254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.34 9.63 59.85 0.58 1.92 16 2 N -0.58 -12.67 2.86 -184.53 -0.53 -13.19 16 3 C 0.21 5.31 4.23 -5.19 -0.02 5.29 16 4 C -0.53 -15.34 9.94 -34.44 -0.34 -15.69 16 5 H 0.08 2.38 8.06 -52.49 -0.42 1.96 16 6 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 7 N -0.89 -27.44 13.96 55.43 0.77 -26.67 16 8 Si 0.88 21.50 27.47 -169.99 -4.67 16.84 16 9 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 12 C 0.59 12.87 7.64 -12.87 -0.10 12.78 16 13 O -0.52 -13.01 16.43 5.18 0.09 -12.93 16 14 C -0.03 -0.52 6.77 -36.80 -0.25 -0.77 16 15 C -0.14 -2.18 10.63 -39.39 -0.42 -2.59 16 16 C -0.17 -2.08 10.77 -39.89 -0.43 -2.51 16 17 C -0.03 -0.34 6.94 -35.41 -0.25 -0.59 16 18 C 0.14 1.11 5.27 36.01 0.19 1.30 16 19 O -0.30 -2.99 9.55 -18.84 -0.18 -3.17 16 20 C 0.18 1.39 6.69 -38.71 -0.26 1.13 16 21 C -0.21 -1.02 9.03 -39.48 -0.36 -1.38 16 22 C -0.05 -0.16 10.03 -39.53 -0.40 -0.56 16 23 C -0.16 -0.55 10.02 -39.63 -0.40 -0.94 16 24 C -0.03 -0.16 9.76 -39.18 -0.38 -0.54 16 25 C -0.06 -0.49 5.75 -106.69 -0.61 -1.11 16 26 C 0.26 2.91 14.86 -22.60 -0.34 2.57 16 27 N -0.41 -5.78 18.51 41.69 0.77 -5.01 16 28 O -0.15 -2.21 7.29 5.00 0.04 -2.18 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.36 8.03 -51.93 -0.42 0.95 16 31 H 0.07 1.11 5.40 -51.93 -0.28 0.83 16 32 H 0.04 0.83 7.13 -51.93 -0.37 0.46 16 33 H 0.04 1.07 6.80 -51.93 -0.35 0.72 16 34 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 35 H 0.16 2.34 8.06 -52.48 -0.42 1.92 16 36 H 0.16 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.09 0.53 7.66 -51.93 -0.40 0.14 16 38 H 0.10 0.46 7.66 -51.93 -0.40 0.06 16 39 H 0.14 0.40 6.30 -52.48 -0.33 0.07 16 40 H 0.13 0.14 8.06 -52.49 -0.42 -0.28 16 41 H 0.14 0.15 8.06 -52.49 -0.42 -0.27 16 42 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 LS Contribution 374.02 15.07 5.64 5.64 Total: -1.00 -37.12 374.02 -6.63 -43.75 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -4.67 Total: -3.43 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -3.88 Total: 0.36 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 1.02 Total: -44.87 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.06 Total: -18.27 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.12 -6.63 -43.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058213946.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.504 kcal (2) G-P(sol) polarization free energy of solvation -37.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds