Wall clock time and date at job start Tue Mar 31 2020 06:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39725 * 125.78095 * 2 1 4 4 C 1.36154 * 107.86065 * 179.97438 * 3 2 1 5 5 N 1.39361 * 126.26113 * 179.97438 * 4 3 2 6 6 C 1.34770 * 120.00240 * 0.04823 * 5 4 3 7 7 O 1.21671 * 119.99778 * 359.97438 * 6 5 4 8 8 C 1.46955 * 120.00196 * 179.97438 * 6 5 4 9 9 C 1.33713 * 124.66252 * 179.72340 * 8 6 5 10 10 C 1.40414 * 115.56998 * 179.85619 * 9 8 6 11 11 C 1.41576 * 128.85238 * 180.16852 * 10 9 8 12 12 C 1.35919 * 120.49378 * 180.28158 * 11 10 9 13 13 C 1.38966 * 120.69526 * 359.97438 * 12 11 10 14 14 C 1.37401 * 120.18777 * 0.02562 * 13 12 11 15 15 C 1.39886 * 120.18156 * 359.97295 * 14 13 12 16 16 S 1.75483 * 124.65761 * 0.02562 * 8 6 5 17 17 N 1.35805 * 107.47168 * 0.02562 * 4 3 2 18 18 C 1.46501 * 126.09680 * 179.97438 * 17 4 3 19 19 C 1.50697 * 109.46785 * 269.97573 * 18 17 4 20 20 H 1.07993 * 120.00371 * 359.97438 * 19 18 17 21 21 C 1.37884 * 119.99978 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99397 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00323 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46898 * 59.99982 * 23 21 19 25 25 H 1.48493 * 109.47083 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46885 * 300.00310 * 23 21 19 27 27 N 1.30835 * 125.77674 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47346 * 270.02202 * 1 2 3 29 29 H 1.08999 * 109.46953 * 30.02559 * 1 2 3 30 30 H 1.09001 * 109.47239 * 150.02647 * 1 2 3 31 31 H 1.08005 * 126.06398 * 0.02562 * 3 2 1 32 32 H 0.96997 * 119.99790 * 180.02562 * 5 4 3 33 33 H 1.08001 * 122.21131 * 0.02562 * 9 8 6 34 34 H 1.07994 * 119.74890 * 0.28552 * 11 10 9 35 35 H 1.08001 * 119.64938 * 180.02562 * 12 11 10 36 36 H 1.08001 * 119.90626 * 180.02562 * 13 12 11 37 37 H 1.07999 * 119.90554 * 180.02562 * 14 13 12 38 38 H 1.09002 * 109.46688 * 29.97097 * 18 17 4 39 39 H 1.08994 * 109.47182 * 149.97170 * 18 17 4 40 40 H 0.97005 * 119.99194 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1335 0.0000 4 6 3.6195 0.7146 0.0006 5 7 4.7495 1.5302 0.0003 6 6 4.6129 2.8709 0.0003 7 8 3.5030 3.3693 0.0001 8 6 5.8046 3.7309 0.0006 9 6 5.7776 5.0678 -0.0047 10 6 7.0317 5.6993 -0.0002 11 6 7.3291 7.0834 -0.0006 12 6 8.6191 7.5117 -0.0015 13 6 9.6689 6.6012 -0.0014 14 6 9.4126 5.2513 -0.0011 15 6 8.0934 4.7859 -0.0001 16 16 7.4585 3.1445 0.0002 17 7 3.6088 -0.6434 0.0004 18 6 4.7858 -1.5158 0.0003 19 6 5.1890 -1.8151 -1.4206 20 1 4.6248 -1.3977 -2.2414 21 6 6.2784 -2.6219 -1.6727 22 7 6.9657 -3.1298 -0.6731 23 14 6.7778 -2.9936 -3.4339 24 1 7.1011 -1.7250 -4.1349 25 1 7.9709 -3.8777 -3.4340 26 1 5.6580 -3.6739 -4.1329 27 7 2.2719 -1.0615 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5134 31 1 1.9874 2.1598 0.0004 32 1 5.6343 1.1328 0.0004 33 1 4.8524 5.6249 -0.0092 34 1 6.5250 7.8043 -0.0002 35 1 8.8304 8.5709 -0.0014 36 1 10.6891 6.9556 -0.0017 37 1 10.2319 4.5477 -0.0006 38 1 5.6077 -1.0169 0.5138 39 1 4.5479 -2.4470 0.5143 40 1 7.7319 -3.6977 -0.8505 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058226698.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:40 Heat of formation + Delta-G solvation = 88.092385 kcal Electronic energy + Delta-G solvation = -25615.448765 eV Core-core repulsion = 21909.276169 eV Total energy + Delta-G solvation = -3706.172596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.094 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91582 -40.01387 -39.12135 -35.49313 -34.81233 -33.79437 -32.08779 -31.35792 -30.18701 -29.09492 -28.16372 -26.05441 -24.93378 -23.62480 -22.88130 -21.98145 -20.54339 -19.77433 -19.50231 -18.27524 -17.04044 -16.78507 -16.56474 -15.89003 -15.65438 -15.36302 -15.10818 -14.71891 -14.33467 -14.19702 -14.02193 -13.92966 -13.76461 -13.13152 -12.90179 -12.78173 -12.53053 -12.11295 -12.07318 -11.81877 -11.59324 -11.55787 -11.49973 -11.10802 -10.90528 -10.87805 -10.49018 -10.35194 -10.12264 -10.03074 -9.84250 -9.62086 -8.85083 -8.72039 -8.01688 -7.94533 -7.49985 -6.33741 -4.42472 0.04510 0.93427 1.16733 1.63121 1.67484 2.50535 2.67270 3.17492 3.18749 3.22860 3.27663 3.41506 3.60292 3.71085 4.23980 4.32245 4.48825 4.58837 4.77745 4.93815 4.99464 5.01010 5.32514 5.33605 5.45711 5.53196 5.61504 5.66718 5.97163 6.01775 6.04880 6.10865 6.12496 6.15081 6.22861 6.35149 6.50550 6.61257 6.81105 7.01570 7.42850 7.51792 7.59413 7.77918 7.81656 8.15470 8.58366 8.68262 9.25152 10.73398 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.009606 B = 0.003640 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2914.248951 B = 7690.316808 C =10121.400174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.289 4.289 4 C 0.299 3.701 5 N -0.632 5.632 6 C 0.594 3.406 7 O -0.500 6.500 8 C -0.218 4.218 9 C -0.039 4.039 10 C -0.087 4.087 11 C -0.066 4.066 12 C -0.125 4.125 13 C -0.093 4.093 14 C -0.086 4.086 15 C -0.129 4.129 16 S 0.142 5.858 17 N -0.344 5.344 18 C 0.257 3.743 19 C -0.543 4.543 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.889 5.889 23 Si 0.906 3.094 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.273 1.273 27 N -0.280 5.280 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.162 0.838 32 H 0.415 0.585 33 H 0.158 0.842 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.971 19.841 2.854 20.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.114 4.114 3 C -0.321 4.321 4 C 0.077 3.923 5 N -0.278 5.278 6 C 0.380 3.620 7 O -0.375 6.375 8 C -0.337 4.337 9 C -0.072 4.072 10 C -0.096 4.096 11 C -0.086 4.086 12 C -0.145 4.145 13 C -0.115 4.115 14 C -0.109 4.109 15 C -0.246 4.246 16 S 0.411 5.589 17 N -0.130 5.130 18 C 0.139 3.861 19 C -0.581 4.581 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.526 5.526 23 Si 0.732 3.268 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.198 1.198 27 N -0.105 5.105 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.180 0.820 32 H 0.252 0.748 33 H 0.175 0.825 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.113 17.161 2.912 17.886 hybrid contribution 0.514 1.566 -0.973 1.914 sum 4.628 18.727 1.940 19.388 Atomic orbital electron populations 1.20027 0.87464 1.02509 1.02094 1.22022 0.96580 0.90915 1.01933 1.21271 0.88937 1.00539 1.21377 1.17936 0.87600 0.83368 1.03397 1.42507 1.08547 1.05160 1.71540 1.16825 0.87634 0.80606 0.76952 1.90760 1.24792 1.73749 1.48240 1.23487 0.97179 0.97708 1.15325 1.20214 0.98446 0.92390 0.96128 1.18215 0.91445 0.94396 1.05496 1.20837 0.97358 0.92893 0.97546 1.20715 0.92434 1.00088 1.01253 1.21132 0.99593 0.92356 0.98402 1.20533 0.93482 0.96162 1.00713 1.23082 0.97840 0.97058 1.06625 1.84623 0.95566 1.03113 1.75638 1.49531 1.06563 1.01932 1.54996 1.19639 0.77762 0.89712 0.98993 1.21306 1.13472 1.32088 0.91280 0.91702 1.24928 0.95611 0.94818 0.98208 1.69911 1.19126 1.32487 1.31124 0.86417 0.78133 0.78565 0.83658 1.19902 1.20834 1.19817 1.77347 0.86069 1.21779 1.25322 0.91320 0.91086 0.91444 0.82021 0.74832 0.82486 0.85174 0.85294 0.85028 0.85142 0.93935 0.92374 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.02 7.20 -82.46 -0.59 0.43 16 3 C -0.29 -6.02 9.58 -39.78 -0.38 -6.40 16 4 C 0.30 6.51 7.68 -152.76 -1.17 5.34 16 5 N -0.63 -11.96 5.41 -12.46 -0.07 -12.03 16 6 C 0.59 10.29 7.75 -12.73 -0.10 10.19 16 7 O -0.50 -9.44 13.85 5.21 0.07 -9.37 16 8 C -0.22 -3.12 6.32 -37.64 -0.24 -3.36 16 9 C -0.04 -0.48 9.79 -40.35 -0.40 -0.88 16 10 C -0.09 -0.98 5.87 -107.13 -0.63 -1.60 16 11 C -0.07 -0.57 10.03 -39.14 -0.39 -0.96 16 12 C -0.12 -0.90 9.94 -40.14 -0.40 -1.30 16 13 C -0.09 -0.69 10.03 -39.62 -0.40 -1.09 16 14 C -0.09 -0.81 10.07 -39.27 -0.40 -1.20 16 15 C -0.13 -1.49 6.50 -38.29 -0.25 -1.74 16 16 S 0.14 1.85 22.26 -107.50 -2.39 -0.54 16 17 N -0.34 -8.24 3.62 -61.45 -0.22 -8.46 16 18 C 0.26 6.52 6.02 -5.19 -0.03 6.49 16 19 C -0.54 -14.78 9.39 -34.44 -0.32 -15.10 16 20 H 0.06 1.83 7.81 -52.49 -0.41 1.42 16 21 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 22 N -0.89 -24.39 13.29 55.43 0.74 -23.65 16 23 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 27 N -0.28 -6.58 12.56 33.64 0.42 -6.16 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.16 3.23 5.82 -52.48 -0.31 2.93 16 32 H 0.41 7.53 7.04 -40.82 -0.29 7.25 16 33 H 0.16 1.73 7.96 -52.49 -0.42 1.32 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 37 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.04 1.05 7.52 -51.93 -0.39 0.66 16 39 H 0.06 1.58 8.14 -51.93 -0.42 1.15 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 363.16 15.07 5.47 5.47 Total: -1.00 -31.64 363.16 -10.75 -42.38 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -4.33 Total: 6.54 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -5.42 Total: -10.01 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: 0.87 Total: -50.30 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.07 Total: -9.37 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.39 Total: -0.54 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.64 -10.75 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058226698.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.474 kcal (2) G-P(sol) polarization free energy of solvation -31.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds