Wall clock time and date at job start Tue Mar 31 2020 06:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.52996 * 109.47581 * 44.21851 * 3 2 1 5 5 N 1.46494 * 109.47098 * 180.02562 * 4 3 2 6 6 C 1.46507 * 119.99591 * 263.33981 * 5 4 3 7 7 C 1.50700 * 109.47288 * 270.00044 * 6 5 4 8 8 H 1.07998 * 120.00116 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99752 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99828 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99718 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47300 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.46867 * 120.00261 * 11 9 7 14 14 H 1.48507 * 109.46744 * 240.00084 * 11 9 7 15 15 C 1.34771 * 120.00390 * 83.34591 * 5 4 3 16 16 O 1.21634 * 120.00295 * 184.38031 * 15 5 4 17 17 C 1.47313 * 119.99918 * 4.37831 * 15 5 4 18 18 C 1.35212 * 122.42935 * 174.07777 * 17 15 5 19 19 S 1.71009 * 109.10599 * 179.76958 * 18 17 15 20 20 C 1.76007 * 90.57428 * 0.31713 * 19 18 17 21 21 C 1.47919 * 125.32044 * 179.97438 * 20 19 18 22 22 C 1.39523 * 120.13600 * 359.69452 * 21 20 19 23 23 C 1.37970 * 119.85597 * 180.02562 * 22 21 20 24 24 C 1.38349 * 120.14210 * 359.97220 * 23 22 21 25 25 C 1.38348 * 120.28008 * 0.27822 * 24 23 22 26 26 C 1.37974 * 120.13860 * 359.48777 * 25 24 23 27 27 N 1.29840 * 109.36146 * 359.67736 * 20 19 18 28 28 H 1.09000 * 109.46993 * 284.21348 * 3 2 1 29 29 H 1.08999 * 109.46600 * 164.21967 * 3 2 1 30 30 H 1.09002 * 109.47168 * 59.99221 * 4 3 2 31 31 H 1.09009 * 109.46505 * 299.99576 * 4 3 2 32 32 H 1.08995 * 109.46848 * 30.00677 * 6 5 4 33 33 H 1.09005 * 109.46746 * 149.99863 * 6 5 4 34 34 H 0.97001 * 119.99555 * 180.02562 * 10 9 7 35 35 H 1.07997 * 125.44480 * 359.97438 * 18 17 15 36 36 H 1.08005 * 120.07295 * 359.97438 * 22 21 20 37 37 H 1.08000 * 119.93009 * 179.97438 * 23 22 21 38 38 H 1.07997 * 119.86140 * 180.02562 * 24 23 22 39 39 H 1.07999 * 119.93223 * 179.72409 * 25 24 23 40 40 H 1.08006 * 120.06969 * 180.27221 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.0329 -1.0059 5 7 4.5835 -1.0326 -1.0054 6 6 5.3161 -0.2588 -2.0109 7 6 5.5679 -1.1197 -3.2219 8 1 5.2169 -2.1409 -3.2410 9 6 6.2463 -0.6035 -4.3056 10 7 6.6742 0.6399 -4.2821 11 14 6.5578 -1.6704 -5.8070 12 1 5.9801 -3.0201 -5.5837 13 1 5.9210 -1.0494 -6.9961 14 1 8.0205 -1.7899 -6.0344 15 6 5.2572 -1.7441 -0.0801 16 8 6.4709 -1.6810 -0.0294 17 6 4.5238 -2.5983 0.8699 18 6 5.1522 -3.4210 1.7396 19 16 3.9822 -4.2422 2.6784 20 6 2.6872 -3.4172 1.8181 21 6 1.2410 -3.6020 2.0682 22 6 0.8083 -4.4943 3.0497 23 6 -0.5420 -4.6625 3.2778 24 6 -1.4661 -3.9484 2.5361 25 6 -1.0435 -3.0660 1.5580 26 6 0.3040 -2.8851 1.3234 27 7 3.1997 -2.6164 0.9339 28 1 2.9714 -0.2515 0.9962 29 1 2.9708 0.9898 -0.2795 30 1 2.7550 -0.7807 -2.0021 31 1 2.7557 -2.0220 -0.7263 32 1 4.7269 0.6115 -2.2998 33 1 6.2683 0.0693 -1.5939 34 1 7.1512 1.0031 -5.0447 35 1 6.2220 -3.5381 1.8295 36 1 1.5287 -5.0526 3.6291 37 1 -0.8783 -5.3532 4.0369 38 1 -2.5219 -4.0833 2.7188 39 1 -1.7699 -2.5147 0.9793 40 1 0.6328 -2.1927 0.5625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:11 Heat of formation + Delta-G solvation = 80.760174 kcal Electronic energy + Delta-G solvation = -26459.769264 eV Core-core repulsion = 22753.278720 eV Total energy + Delta-G solvation = -3706.490544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.094 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.57006 -39.26972 -38.00733 -36.78731 -35.24119 -32.87982 -32.52158 -31.22183 -30.74321 -29.48046 -27.75122 -25.67986 -24.16472 -23.66858 -22.90922 -22.06108 -20.34927 -19.06139 -17.99049 -17.44419 -17.28289 -16.48302 -16.10628 -15.78932 -15.31818 -15.12485 -15.08448 -14.71852 -14.35769 -14.02897 -13.87466 -13.71190 -13.41015 -13.20941 -13.02245 -12.80675 -12.49427 -12.36949 -12.17736 -11.94144 -11.64474 -11.54200 -11.34906 -11.22756 -10.93043 -10.79139 -10.63106 -10.21133 -10.12086 -9.77377 -9.61840 -9.43603 -9.21620 -9.16368 -8.47044 -8.37030 -7.78717 -6.08436 -4.13122 0.07049 1.06823 1.14325 1.20748 1.49678 2.27319 2.86753 2.93752 3.28667 3.36379 3.40119 3.56928 3.61062 3.80412 3.84480 4.35057 4.42609 4.61483 4.67330 4.79712 4.89357 5.15630 5.18560 5.26038 5.27764 5.30038 5.35394 5.43811 5.58390 5.71614 5.74754 5.79297 6.09932 6.14688 6.20728 6.28176 6.49953 6.65829 6.95619 7.34387 7.35829 7.47820 7.69017 7.87996 8.16959 8.24500 8.77380 8.95316 9.52266 10.99664 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.013231 B = 0.003537 C = 0.003132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.811358 B = 7913.439043 C = 8937.944163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.225 3.775 3 C -0.042 4.042 4 C 0.109 3.891 5 N -0.575 5.575 6 C 0.243 3.757 7 C -0.529 4.529 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.273 1.273 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.579 3.421 16 O -0.529 6.529 17 C 0.026 3.974 18 C -0.214 4.214 19 S 0.161 5.839 20 C 0.084 3.916 21 C -0.023 4.023 22 C -0.101 4.101 23 C -0.119 4.119 24 C -0.107 4.107 25 C -0.113 4.113 26 C -0.075 4.075 27 N -0.427 5.427 28 H 0.103 0.897 29 H 0.108 0.892 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.263 0.737 35 H 0.191 0.809 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.700 -9.547 17.054 23.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.093 4.093 3 C -0.083 4.083 4 C -0.017 4.017 5 N -0.304 5.304 6 C 0.124 3.876 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.725 3.275 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.209 1.209 15 C 0.363 3.637 16 O -0.406 6.406 17 C -0.110 4.110 18 C -0.356 4.356 19 S 0.420 5.580 20 C -0.191 4.191 21 C -0.027 4.027 22 C -0.122 4.122 23 C -0.137 4.137 24 C -0.126 4.126 25 C -0.132 4.132 26 C -0.097 4.097 27 N -0.142 5.142 28 H 0.121 0.879 29 H 0.126 0.874 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.208 0.792 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.143 0.857 39 H 0.147 0.853 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.808 -9.760 17.404 24.266 hybrid contribution 1.245 0.061 -1.560 1.997 sum -12.563 -9.699 15.844 22.427 Atomic orbital electron populations 1.81158 1.12769 1.09321 1.09323 1.29069 0.95138 0.92396 0.92668 1.19773 0.81510 1.03355 1.03661 1.21783 0.81197 1.00362 0.98335 1.48025 1.05753 1.46701 1.29970 1.19454 0.92744 0.90540 0.84834 1.21456 1.36634 0.98829 0.99829 0.92263 1.24915 0.95276 0.95111 0.98652 1.69935 1.38242 1.13838 1.31140 0.86451 0.78069 0.80542 0.82431 1.19788 1.20925 1.20868 1.17090 0.86369 0.80000 0.80276 1.90804 1.12715 1.65061 1.71988 1.20625 0.87851 1.01758 1.00749 1.26535 1.06697 1.01712 1.00622 1.83626 0.96853 1.41498 1.36006 1.26092 0.97476 0.98550 0.96984 1.17802 0.87196 0.99270 0.98433 1.21120 0.96472 0.97588 0.96988 1.21010 0.92448 1.00094 1.00149 1.21331 0.99854 0.95938 0.95504 1.21193 0.95696 0.98275 0.98001 1.21465 0.92382 0.97610 0.98215 1.67375 1.10237 1.19078 1.17526 0.87878 0.87436 0.89689 0.87159 0.94399 0.93331 0.92704 0.79151 0.85755 0.85420 0.85702 0.85344 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.60 17.78 42.15 0.75 -5.85 16 2 C 0.22 3.04 13.45 -20.76 -0.28 2.76 16 3 C -0.04 -0.55 5.46 -29.52 -0.16 -0.71 16 4 C 0.11 1.76 4.94 -4.05 -0.02 1.74 16 5 N -0.58 -11.59 2.47 -176.37 -0.44 -12.02 16 6 C 0.24 5.97 5.16 -5.19 -0.03 5.95 16 7 C -0.53 -14.44 9.39 -34.44 -0.32 -14.77 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -25.70 13.29 55.43 0.74 -24.96 16 11 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 12 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 15 C 0.58 11.71 7.59 -12.57 -0.10 11.61 16 16 O -0.53 -12.56 16.22 5.25 0.09 -12.47 16 17 C 0.03 0.41 6.34 -84.93 -0.54 -0.13 16 18 C -0.21 -2.86 10.57 29.65 0.31 -2.55 16 19 S 0.16 1.63 22.13 -107.50 -2.38 -0.75 16 20 C 0.08 1.02 7.32 -14.43 -0.11 0.92 16 21 C -0.02 -0.26 5.87 -104.98 -0.62 -0.88 16 22 C -0.10 -0.90 9.60 -39.20 -0.38 -1.28 16 23 C -0.12 -0.92 10.03 -39.64 -0.40 -1.32 16 24 C -0.11 -0.89 10.04 -39.50 -0.40 -1.29 16 25 C -0.11 -1.16 10.03 -39.64 -0.40 -1.56 16 26 C -0.08 -0.89 9.68 -39.20 -0.38 -1.27 16 27 N -0.43 -6.06 4.83 -8.10 -0.04 -6.10 16 28 H 0.10 1.33 7.01 -51.93 -0.36 0.97 16 29 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 30 H 0.08 1.40 8.02 -51.93 -0.42 0.99 16 31 H 0.11 1.74 5.16 -51.93 -0.27 1.48 16 32 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 1.34 7.36 -51.93 -0.38 0.96 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.19 2.41 8.00 -52.49 -0.42 1.99 16 36 H 0.12 0.87 7.29 -52.48 -0.38 0.48 16 37 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 38 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 39 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.13 1.75 4.66 -52.48 -0.24 1.50 16 LS Contribution 362.53 15.07 5.46 5.46 Total: -1.00 -31.99 362.53 -8.87 -40.86 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -4.13 Total: 0.53 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -3.90 Total: -1.13 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 1.01 Total: -48.93 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.09 Total: -12.47 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.63 SS G_CDS: -2.38 Total: -0.75 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.99 -8.87 -40.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.617 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds