Wall clock time and date at job start Tue Mar 31 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39733 * 125.78217 * 2 1 4 4 C 1.36146 * 107.86077 * 180.02562 * 3 2 1 5 5 N 1.39389 * 126.26303 * 179.97438 * 4 3 2 6 6 C 1.34771 * 119.99816 * 0.02562 * 5 4 3 7 7 O 1.21586 * 120.00181 * 359.97438 * 6 5 4 8 8 C 1.47672 * 119.99913 * 179.97438 * 6 5 4 9 9 C 1.40032 * 120.50295 * 0.02562 * 8 6 5 10 10 N 1.31471 * 121.51749 * 180.02562 * 9 8 6 11 11 C 1.32332 * 121.78667 * 0.02562 * 10 9 8 12 12 O 1.34446 * 134.99101 * 179.97438 * 11 10 9 13 13 N 1.20854 * 113.07541 * 180.02562 * 12 11 10 14 14 C 1.30002 * 113.53155 * 359.97438 * 13 12 11 15 15 C 1.50701 * 127.40262 * 180.02562 * 14 13 12 16 16 C 1.41229 * 119.93702 * 359.97438 * 11 10 9 17 17 C 1.38666 * 120.05683 * 359.72218 * 16 11 10 18 18 N 1.35805 * 107.47406 * 0.02562 * 4 3 2 19 19 C 1.46501 * 126.09653 * 179.97438 * 18 4 3 20 20 C 1.50704 * 109.46853 * 270.01507 * 19 18 4 21 21 H 1.08001 * 120.00056 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99875 * 179.97438 * 20 19 18 23 23 N 1.31520 * 119.99755 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 120.00068 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.46918 * 89.99710 * 24 22 20 26 26 H 1.48496 * 109.46856 * 209.99736 * 24 22 20 27 27 H 1.48492 * 109.46967 * 329.99983 * 24 22 20 28 28 N 1.30835 * 125.77803 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.47524 * 270.00160 * 1 2 3 30 30 H 1.09001 * 109.47066 * 29.99718 * 1 2 3 31 31 H 1.09003 * 109.47671 * 150.00089 * 1 2 3 32 32 H 1.07995 * 126.06673 * 0.02562 * 3 2 1 33 33 H 0.96997 * 120.00184 * 180.02562 * 5 4 3 34 34 H 1.07998 * 119.24301 * 0.02562 * 9 8 6 35 35 H 1.08997 * 109.47325 * 269.98010 * 15 14 13 36 36 H 1.09004 * 109.46717 * 29.98052 * 15 14 13 37 37 H 1.09005 * 109.46889 * 149.97876 * 15 14 13 38 38 H 1.08002 * 121.14506 * 180.27968 * 17 16 11 39 39 H 1.09000 * 109.46725 * 30.00910 * 19 18 4 40 40 H 1.09000 * 109.47450 * 150.01420 * 19 18 4 41 41 H 0.96996 * 119.99877 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6193 0.7146 -0.0006 5 7 4.7497 1.5303 -0.0013 6 6 4.6131 2.8711 -0.0009 7 8 3.5039 3.3692 -0.0004 8 6 5.8105 3.7353 -0.0011 9 6 7.0929 3.1728 -0.0022 10 7 8.1725 3.9232 -0.0018 11 6 8.1029 5.2447 0.0000 12 8 9.0024 6.2439 0.0013 13 7 8.4930 7.3398 0.0034 14 6 7.1933 7.3081 0.0035 15 6 6.2490 8.4825 0.0053 16 6 6.8436 5.8841 0.0012 17 6 5.6810 5.1285 -0.0054 18 7 3.6087 -0.6434 -0.0015 19 6 4.7857 -1.5157 -0.0029 20 6 5.1885 -1.8135 -1.4243 21 1 4.6240 -1.3952 -2.2445 22 6 6.2778 -2.6200 -1.6775 23 7 6.6290 -2.8803 -2.9179 24 14 7.2538 -3.3441 -0.2589 25 1 6.6790 -4.6611 0.1161 26 1 8.6693 -3.5210 -0.6714 27 1 7.1887 -2.4258 0.9063 28 7 2.2718 -1.0614 -0.0005 29 1 -0.3634 0.0000 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.9875 2.1598 0.0004 33 1 5.6345 1.1330 -0.0020 34 1 7.1976 2.0979 -0.0033 35 1 6.0211 8.7640 1.0334 36 1 6.7150 9.3242 -0.5071 37 1 5.3278 8.2088 -0.5091 38 1 4.7089 5.5991 -0.0092 39 1 5.6078 -1.0174 0.5109 40 1 4.5480 -2.4475 0.5102 41 1 7.3950 -3.4479 -3.0961 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058282787.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:02 Heat of formation + Delta-G solvation = 146.214262 kcal Electronic energy + Delta-G solvation = -28387.877727 eV Core-core repulsion = 24273.765365 eV Total energy + Delta-G solvation = -4114.112362 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.127 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.13169 -41.22482 -40.26245 -38.84530 -35.38608 -35.01775 -33.87504 -32.78953 -32.25704 -31.71287 -29.62768 -29.25754 -28.43903 -26.40604 -25.90152 -24.65025 -22.79257 -22.08910 -21.52549 -20.09583 -19.92879 -18.60165 -18.22340 -18.13075 -17.33008 -17.22131 -16.40444 -16.23614 -15.52609 -15.12311 -14.60221 -14.38204 -14.29046 -14.06845 -13.93703 -13.72712 -13.64411 -13.58373 -13.29181 -13.22802 -12.83095 -12.66039 -12.39871 -11.99834 -11.96651 -11.86573 -11.36743 -11.21608 -10.88954 -10.65778 -10.45822 -10.31763 -9.99315 -9.81416 -9.77620 -9.69741 -9.59487 -8.90228 -8.05967 -7.63377 -6.37606 -4.43120 0.03325 0.09625 1.63340 1.82856 2.10781 2.44752 2.79284 3.06168 3.11924 3.16203 3.23098 3.36695 3.46212 3.49800 3.60621 3.88565 4.10354 4.15601 4.26958 4.33948 4.54807 4.87999 4.94661 4.98561 5.04737 5.20274 5.20795 5.35247 5.50777 5.52464 5.66007 5.92843 5.95971 5.97006 6.11076 6.18659 6.27095 6.50374 6.64144 6.99513 7.14177 7.27809 7.37012 7.58981 7.74849 7.95522 8.19206 8.45262 8.68075 9.16452 10.74402 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.010194 B = 0.003380 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2746.133355 B = 8281.232316 C =10635.787452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.055 3.945 3 C -0.285 4.285 4 C 0.301 3.699 5 N -0.631 5.631 6 C 0.577 3.423 7 O -0.504 6.504 8 C -0.197 4.197 9 C 0.200 3.800 10 N -0.457 5.457 11 C 0.235 3.765 12 O 0.085 5.915 13 N -0.316 5.316 14 C 0.073 3.927 15 C -0.078 4.078 16 C -0.230 4.230 17 C 0.072 3.928 18 N -0.343 5.343 19 C 0.229 3.771 20 C -0.549 4.549 21 H 0.082 0.918 22 C 0.082 3.918 23 N -0.881 5.881 24 Si 0.872 3.128 25 H -0.269 1.269 26 H -0.278 1.278 27 H -0.265 1.265 28 N -0.277 5.277 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.164 0.836 33 H 0.414 0.586 34 H 0.183 0.817 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.090 0.910 38 H 0.165 0.835 39 H 0.039 0.961 40 H 0.052 0.948 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.712 18.793 8.009 20.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.317 4.317 4 C 0.080 3.920 5 N -0.278 5.278 6 C 0.363 3.637 7 O -0.378 6.378 8 C -0.203 4.203 9 C 0.034 3.966 10 N -0.173 5.173 11 C 0.053 3.947 12 O 0.029 5.971 13 N -0.024 5.024 14 C -0.097 4.097 15 C -0.136 4.136 16 C -0.235 4.235 17 C 0.043 3.957 18 N -0.128 5.128 19 C 0.110 3.890 20 C -0.587 4.587 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.517 5.517 24 Si 0.698 3.302 25 H -0.195 1.195 26 H -0.204 1.204 27 H -0.189 1.189 28 N -0.102 5.102 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.182 0.818 33 H 0.252 0.748 34 H 0.200 0.800 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.182 0.818 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.326 18.317 7.882 19.944 hybrid contribution 0.066 -0.166 0.433 0.468 sum -0.261 18.151 8.315 19.967 Atomic orbital electron populations 1.20047 0.87324 1.02709 1.02159 1.22050 0.96657 0.90864 1.01484 1.21284 0.88875 1.00598 1.20940 1.17903 0.87704 0.83049 1.03366 1.42510 1.08535 1.05249 1.71519 1.17483 0.88316 0.80838 0.77035 1.90744 1.25457 1.73717 1.47906 1.20726 0.94639 0.94409 1.10555 1.23234 0.85137 1.00029 0.88163 1.66457 1.33279 1.01343 1.16223 1.21812 0.86715 0.90143 0.96069 1.84923 1.31585 1.07868 1.72736 1.73515 1.11141 1.00654 1.17098 1.24328 0.90998 0.93950 1.00402 1.20307 0.96472 0.92503 1.04279 1.20875 0.95853 0.94447 1.12343 1.20908 0.98076 0.90941 0.85738 1.49085 1.06211 1.01799 1.55748 1.19975 0.79200 0.90035 0.99793 1.21183 1.14390 1.32929 0.90242 0.89985 1.24824 0.96586 0.95164 0.95797 1.69867 1.26856 1.36327 1.18625 0.86924 0.80113 0.80750 0.82425 1.19464 1.20369 1.18939 1.77376 0.85772 1.21746 1.25310 0.91250 0.90957 0.91322 0.81830 0.74785 0.80010 0.89120 0.89532 0.89138 0.81796 0.94300 0.93022 0.91931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 10.44 36.00 0.38 -0.49 16 2 C 0.05 1.02 7.20 -82.46 -0.59 0.43 16 3 C -0.29 -5.34 9.58 -39.78 -0.38 -5.72 16 4 C 0.30 5.80 7.68 -152.74 -1.17 4.63 16 5 N -0.63 -9.81 5.37 -12.25 -0.07 -9.88 16 6 C 0.58 8.06 7.74 -12.41 -0.10 7.96 16 7 O -0.50 -7.96 13.55 5.29 0.07 -7.89 16 8 C -0.20 -2.23 5.90 -104.74 -0.62 -2.84 16 9 C 0.20 2.22 10.68 -17.03 -0.18 2.04 16 10 N -0.46 -5.76 10.36 -12.60 -0.13 -5.89 16 11 C 0.23 2.87 8.75 -16.20 -0.14 2.73 16 12 O 0.09 1.05 11.11 16.10 0.18 1.23 16 13 N -0.32 -3.55 11.94 34.92 0.42 -3.14 16 14 C 0.07 0.67 7.59 -79.98 -0.61 0.06 16 15 C -0.08 -0.39 10.50 36.01 0.38 -0.02 16 16 C -0.23 -2.39 6.55 -105.22 -0.69 -3.08 16 17 C 0.07 0.71 9.75 -38.79 -0.38 0.33 16 18 N -0.34 -7.43 3.62 -61.44 -0.22 -7.66 16 19 C 0.23 5.10 5.09 -5.19 -0.03 5.07 16 20 C -0.55 -14.45 9.94 -34.44 -0.34 -14.79 16 21 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 22 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 23 N -0.88 -25.04 13.96 55.43 0.77 -24.26 16 24 Si 0.87 18.98 27.47 -169.99 -4.67 14.31 16 25 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.26 -5.26 6.54 56.52 0.37 -4.89 16 28 N -0.28 -6.04 12.56 33.64 0.42 -5.62 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.16 2.91 5.83 -52.49 -0.31 2.60 16 33 H 0.41 5.69 6.04 -40.82 -0.25 5.45 16 34 H 0.18 1.67 6.39 -52.49 -0.34 1.33 16 35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.16 1.29 7.74 -52.49 -0.41 0.89 16 39 H 0.04 0.77 6.58 -51.93 -0.34 0.43 16 40 H 0.05 1.16 7.57 -51.93 -0.39 0.77 16 41 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 358.91 15.07 5.41 5.41 Total: -1.00 -33.10 358.91 -6.54 -39.64 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -4.15 Total: 5.36 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -4.57 Total: -1.63 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: 1.19 Total: -56.44 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: 0.25 Total: -6.66 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.67 Total: 14.31 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.10 -6.54 -39.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282787.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.858 kcal (2) G-P(sol) polarization free energy of solvation -33.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds