Wall clock time and date at job start Tue Mar 31 2020 06:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39734 * 125.77549 * 2 1 4 4 C 1.36148 * 107.85591 * 180.16603 * 3 2 1 5 5 N 1.39388 * 126.26243 * 179.84880 * 4 3 2 6 6 C 1.34778 * 119.99948 * 359.68139 * 5 4 3 7 7 O 1.21609 * 119.99864 * 0.02562 * 6 5 4 8 8 C 1.47513 * 120.00134 * 180.02562 * 6 5 4 9 9 C 1.40362 * 120.47569 * 180.22993 * 8 6 5 10 10 C 1.36860 * 118.48734 * 180.24240 * 9 8 6 11 11 C 1.39393 * 119.38132 * 359.75068 * 10 9 8 12 12 N 1.38467 * 119.53661 * 179.97438 * 11 10 9 13 13 C 1.46500 * 120.00195 * 355.24067 * 12 11 10 14 14 C 1.52994 * 117.50212 * 229.35173 * 13 12 11 15 15 C 1.52998 * 117.50032 * 160.69149 * 13 12 11 16 16 N 1.32604 * 120.92519 * 0.02680 * 11 10 9 17 17 C 1.31677 * 121.64127 * 359.97284 * 16 11 10 18 18 N 1.35802 * 107.47511 * 359.57822 * 4 3 2 19 19 C 1.46501 * 126.09478 * 180.22992 * 18 4 3 20 20 C 1.50702 * 109.47033 * 90.00178 * 19 18 4 21 21 H 1.07999 * 120.00150 * 359.97438 * 20 19 18 22 22 C 1.37875 * 119.99681 * 180.02562 * 20 19 18 23 23 N 1.31518 * 120.00134 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00074 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46995 * 89.99778 * 24 22 20 26 26 H 1.48497 * 109.47418 * 210.00360 * 24 22 20 27 27 H 1.48507 * 109.47081 * 330.00229 * 24 22 20 28 28 N 1.30830 * 125.78199 * 179.69591 * 2 1 3 29 29 H 1.08996 * 109.47375 * 270.27853 * 1 2 3 30 30 H 1.08999 * 109.47407 * 30.28113 * 1 2 3 31 31 H 1.09002 * 109.46838 * 150.28041 * 1 2 3 32 32 H 1.07993 * 126.07285 * 0.04343 * 3 2 1 33 33 H 0.97000 * 120.00247 * 179.68698 * 5 4 3 34 34 H 1.07997 * 120.75731 * 359.97428 * 9 8 6 35 35 H 1.07997 * 120.30475 * 179.73176 * 10 9 8 36 36 H 0.97001 * 119.99834 * 175.23941 * 12 11 10 37 37 H 1.09001 * 115.54638 * 15.01830 * 13 12 11 38 38 H 1.09006 * 117.49823 * 359.97438 * 14 13 12 39 39 H 1.08993 * 117.50429 * 145.01791 * 14 13 12 40 40 H 1.09004 * 117.49508 * 214.98053 * 15 13 12 41 41 H 1.08997 * 117.49984 * 359.97438 * 15 13 12 42 42 H 1.08001 * 119.74304 * 179.97438 * 17 16 11 43 43 H 1.08999 * 109.47404 * 210.00125 * 19 18 4 44 44 H 1.08999 * 109.46904 * 329.99820 * 19 18 4 45 45 H 0.97002 * 119.99378 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1337 0.0000 4 6 3.6193 0.7148 -0.0038 5 7 4.7496 1.5305 -0.0080 6 6 4.6129 2.8713 -0.0152 7 8 3.5035 3.3694 -0.0174 8 6 5.8090 3.7346 -0.0202 9 6 5.6783 5.1321 -0.0228 10 6 6.8151 5.8941 -0.0326 11 6 8.0595 5.2659 -0.0343 12 7 9.2117 6.0337 -0.0447 13 6 9.1197 7.4913 -0.1591 14 6 9.9994 8.1746 -1.2079 15 6 10.3340 8.3124 0.2794 16 7 8.1552 3.9433 -0.0272 17 6 7.0870 3.1735 -0.0177 18 7 3.6088 -0.6432 0.0035 19 6 4.7859 -1.5154 0.0075 20 6 5.1903 -1.8069 1.4296 21 1 4.6272 -1.3844 2.2486 22 6 6.2799 -2.6121 1.6852 23 7 6.9666 -3.1254 0.6878 24 14 6.7817 -2.9729 3.4479 25 1 6.0815 -4.1937 3.9219 26 1 8.2497 -3.1884 3.5106 27 1 6.4128 -1.8234 4.3128 28 7 2.2719 -1.0613 0.0056 29 1 -0.3634 0.0050 1.0276 30 1 -0.3634 0.8874 -0.5182 31 1 -0.3633 -0.8925 -0.5095 32 1 1.9874 2.1599 0.0007 33 1 5.6345 1.1332 -0.0059 34 1 4.7028 5.5956 -0.0216 35 1 6.7487 6.9720 -0.0392 36 1 10.0799 5.6064 0.0237 37 1 8.1325 7.9158 0.0235 38 1 10.6470 7.5397 -1.8126 39 1 9.5913 9.0488 -1.7150 40 1 10.1456 9.2773 0.7503 41 1 11.2011 7.7681 0.6534 42 1 7.2006 2.0995 -0.0125 43 1 4.5477 -2.4495 -0.5013 44 1 5.6073 -1.0194 -0.5096 45 1 7.7329 -3.6923 0.8677 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058297991.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:29 Heat of formation + Delta-G solvation = 116.549219 kcal Electronic energy + Delta-G solvation = -28245.951728 eV Core-core repulsion = 24266.386088 eV Total energy + Delta-G solvation = -3979.565640 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.03567 -40.42034 -38.98369 -37.98995 -34.77770 -34.11035 -33.74413 -32.63174 -32.02978 -30.13292 -29.00941 -27.89988 -25.99428 -24.67904 -23.88906 -22.90902 -22.78671 -22.06094 -21.17831 -19.77452 -19.37177 -18.37388 -17.31567 -17.17527 -16.75234 -16.25708 -15.76226 -15.51445 -15.23460 -14.89095 -14.63879 -14.50539 -14.26374 -13.87536 -13.86640 -13.46261 -13.18310 -12.85736 -12.74645 -12.52157 -12.45490 -12.28365 -12.07465 -11.99419 -11.75182 -11.54099 -11.05779 -11.03240 -10.87095 -10.39266 -10.32347 -10.21652 -10.08630 -10.01203 -9.78764 -9.71153 -9.39067 -8.69667 -8.06237 -7.85817 -7.38461 -6.31003 -4.39390 0.68327 1.15601 2.47933 2.55704 2.84769 3.12593 3.19330 3.25981 3.30359 3.34613 3.60748 3.82266 3.90850 4.17331 4.24312 4.27000 4.40876 4.42969 4.58724 4.73333 4.80617 4.96737 5.02387 5.11956 5.18479 5.37935 5.39541 5.42316 5.55516 5.65959 5.75376 5.96059 6.06843 6.16118 6.19740 6.22604 6.33267 6.45706 6.61927 6.71216 6.86758 7.07244 7.10588 7.55048 7.61090 7.65915 7.81927 7.82453 7.94982 8.33810 8.64763 8.74065 9.28297 10.76046 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.002924 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.113805 B = 9574.237187 C =11979.271842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.292 4.292 4 C 0.302 3.698 5 N -0.636 5.636 6 C 0.577 3.423 7 O -0.518 6.518 8 C -0.244 4.244 9 C 0.029 3.971 10 C -0.246 4.246 11 C 0.425 3.575 12 N -0.689 5.689 13 C 0.084 3.916 14 C -0.195 4.195 15 C -0.186 4.186 16 N -0.544 5.544 17 C 0.196 3.804 18 N -0.346 5.346 19 C 0.257 3.743 20 C -0.540 4.540 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.905 3.095 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.272 1.272 28 N -0.284 5.284 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.162 0.838 33 H 0.414 0.586 34 H 0.148 0.852 35 H 0.138 0.862 36 H 0.408 0.592 37 H 0.135 0.865 38 H 0.099 0.901 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.164 0.836 43 H 0.057 0.943 44 H 0.044 0.956 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.279 22.370 -3.179 22.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 C -0.324 4.324 4 C 0.080 3.920 5 N -0.283 5.283 6 C 0.365 3.635 7 O -0.394 6.394 8 C -0.252 4.252 9 C 0.003 3.997 10 C -0.271 4.271 11 C 0.189 3.811 12 N -0.318 5.318 13 C -0.023 4.023 14 C -0.234 4.234 15 C -0.225 4.225 16 N -0.260 5.260 17 C 0.036 3.964 18 N -0.132 5.132 19 C 0.139 3.861 20 C -0.579 4.579 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.732 3.268 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.197 1.197 28 N -0.109 5.109 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.179 0.821 33 H 0.251 0.749 34 H 0.166 0.834 35 H 0.156 0.844 36 H 0.245 0.755 37 H 0.153 0.847 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.117 0.883 42 H 0.181 0.819 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.643 21.081 -3.241 21.829 hybrid contribution 0.743 0.407 0.995 1.307 sum 5.386 21.488 -2.245 22.266 Atomic orbital electron populations 1.20015 0.87627 1.02295 1.02119 1.22012 0.96503 0.91043 1.02009 1.21266 0.89040 1.00440 1.21649 1.18000 0.87904 0.83276 1.02849 1.42618 1.08273 1.05466 1.71931 1.17767 0.88841 0.80653 0.76253 1.90698 1.25995 1.73852 1.48810 1.20432 0.93811 0.94837 1.16128 1.21135 0.99321 0.91587 0.87690 1.21124 0.91272 1.01223 1.13461 1.18485 0.86530 0.88125 0.87923 1.43790 1.06308 1.03890 1.77779 1.21643 0.97349 0.79215 1.04137 1.23532 1.04070 1.03426 0.92396 1.23405 0.99327 1.01981 0.97773 1.67240 1.33670 1.03526 1.21610 1.22784 0.86160 0.99571 0.87910 1.49495 1.06453 1.02052 1.55225 1.19620 0.77854 0.89742 0.98885 1.21347 1.13308 1.31859 0.91354 0.91688 1.24928 0.95675 0.94894 0.98145 1.69919 1.19203 1.32496 1.31100 0.86368 0.77635 0.79073 0.83723 1.20236 1.20839 1.19659 1.77325 0.86173 1.21834 1.25569 0.91349 0.91166 0.91588 0.82072 0.74863 0.83447 0.84406 0.75502 0.84750 0.88303 0.87805 0.87599 0.88269 0.81890 0.92521 0.93848 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.56 16 2 C 0.05 1.01 7.20 -82.46 -0.59 0.41 16 3 C -0.29 -6.09 9.58 -39.77 -0.38 -6.47 16 4 C 0.30 6.50 7.68 -152.74 -1.17 5.32 16 5 N -0.64 -11.54 5.37 -12.29 -0.07 -11.60 16 6 C 0.58 9.64 7.73 -12.48 -0.10 9.55 16 7 O -0.52 -9.65 13.53 5.27 0.07 -9.58 16 8 C -0.24 -3.34 5.89 -104.82 -0.62 -3.95 16 9 C 0.03 0.33 9.65 -39.28 -0.38 -0.05 16 10 C -0.25 -2.42 9.28 -39.65 -0.37 -2.79 16 11 C 0.43 4.68 7.63 -155.27 -1.18 3.49 16 12 N -0.69 -5.72 5.73 -53.96 -0.31 -6.02 16 13 C 0.08 0.48 6.27 -67.93 -0.43 0.06 16 14 C -0.20 -0.94 10.46 -26.70 -0.28 -1.22 16 15 C -0.19 -0.83 10.45 -26.70 -0.28 -1.11 16 16 N -0.54 -7.11 10.39 -12.14 -0.13 -7.23 16 17 C 0.20 2.60 10.71 -17.12 -0.18 2.41 16 18 N -0.35 -8.23 3.62 -61.45 -0.22 -8.45 16 19 C 0.26 6.46 6.02 -5.19 -0.03 6.43 16 20 C -0.54 -14.60 9.39 -34.44 -0.32 -14.93 16 21 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -24.41 13.29 55.43 0.74 -23.67 16 24 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 28 N -0.28 -6.69 12.56 33.64 0.42 -6.27 16 29 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.16 3.25 5.82 -52.49 -0.31 2.94 16 33 H 0.41 6.93 6.04 -40.82 -0.25 6.68 16 34 H 0.15 1.54 7.73 -52.49 -0.41 1.14 16 35 H 0.14 0.94 5.85 -52.49 -0.31 0.64 16 36 H 0.41 3.20 8.93 -40.82 -0.36 2.83 16 37 H 0.14 0.63 5.89 -51.93 -0.31 0.33 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.16 2.02 6.41 -52.49 -0.34 1.68 16 43 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.04 1.05 7.52 -51.93 -0.39 0.66 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 384.64 15.07 5.80 5.80 Total: -1.00 -32.74 384.64 -10.34 -43.08 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -5.59 Total: 9.76 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -6.04 Total: -1.69 kcal Atomic # 7 Polarization: -63.69 SS G_CDS: 0.44 Total: -63.25 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.07 Total: -9.58 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.74 -10.34 -43.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058297991.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.631 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds