Wall clock time and date at job start Tue Mar 31 2020 04:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38240 * 119.99732 * 2 1 4 4 C 1.38236 * 119.99861 * 180.25165 * 3 2 1 5 5 C 1.50699 * 119.99858 * 179.77216 * 4 3 2 6 6 C 1.53000 * 109.46665 * 240.01950 * 5 4 3 7 7 C 1.52998 * 109.47079 * 0.02562 * 5 4 3 8 8 C 1.52996 * 109.47323 * 120.02059 * 5 4 3 9 9 C 1.38230 * 119.99976 * 359.78684 * 4 3 2 10 10 C 1.38235 * 120.00377 * 359.96171 * 9 4 3 11 11 C 1.50701 * 120.00587 * 179.97438 * 10 9 4 12 12 C 1.38228 * 120.00217 * 179.76600 * 2 1 3 13 13 S 1.76197 * 120.00225 * 359.97438 * 12 2 1 14 14 O 1.42102 * 106.40566 * 142.67756 * 13 12 2 15 15 O 1.42102 * 106.40100 * 9.76109 * 13 12 2 16 16 N 1.65596 * 107.22119 * 256.22036 * 13 12 2 17 17 C 1.46496 * 120.00332 * 62.00874 * 16 13 12 18 18 H 1.09004 * 109.46626 * 355.97918 * 17 16 13 19 19 C 1.53001 * 109.47273 * 115.97876 * 17 16 13 20 20 C 1.50701 * 109.47396 * 235.98236 * 17 16 13 21 21 H 1.08002 * 119.99748 * 359.97438 * 20 17 16 22 22 C 1.37872 * 120.00299 * 179.97438 * 20 17 16 23 23 N 1.31511 * 120.00350 * 179.97438 * 22 20 17 24 24 Si 1.86809 * 119.99820 * 359.97438 * 22 20 17 25 25 H 1.48499 * 109.47053 * 90.00186 * 24 22 20 26 26 H 1.48498 * 109.47024 * 210.00208 * 24 22 20 27 27 H 1.48499 * 109.47001 * 329.99743 * 24 22 20 28 28 H 1.09004 * 109.46660 * 254.02189 * 1 2 3 29 29 H 1.08998 * 109.47507 * 14.02853 * 1 2 3 30 30 H 1.08999 * 109.46519 * 134.03098 * 1 2 3 31 31 H 1.08003 * 119.99648 * 0.02562 * 3 2 1 32 32 H 1.09006 * 109.47554 * 59.99970 * 6 5 4 33 33 H 1.08998 * 109.47317 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.47640 * 299.99649 * 6 5 4 35 35 H 1.08998 * 109.47315 * 60.00517 * 7 5 4 36 36 H 1.09000 * 109.47218 * 180.02562 * 7 5 4 37 37 H 1.09006 * 109.47100 * 300.00005 * 7 5 4 38 38 H 1.09003 * 109.47241 * 59.99501 * 8 5 4 39 39 H 1.09000 * 109.46909 * 179.97438 * 8 5 4 40 40 H 1.08998 * 109.47062 * 299.99477 * 8 5 4 41 41 H 1.08000 * 120.00225 * 179.97438 * 9 4 3 42 42 H 1.09002 * 109.46961 * 270.02481 * 11 10 9 43 43 H 1.08998 * 109.46643 * 30.01838 * 11 10 9 44 44 H 1.09000 * 109.47227 * 150.01781 * 11 10 9 45 45 H 0.97007 * 119.99730 * 242.01057 * 16 13 12 46 46 H 1.09005 * 109.47097 * 180.02562 * 19 17 16 47 47 H 1.09001 * 109.47085 * 300.00019 * 19 17 16 48 48 H 1.08997 * 109.47139 * 60.00008 * 19 17 16 49 49 H 0.97002 * 120.00522 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1973 -0.0053 5 6 4.3339 2.5024 -0.0104 6 6 5.2084 2.5814 -1.2634 7 6 3.3396 3.6652 -0.0081 8 6 5.2187 2.5855 1.2350 9 6 4.2717 0.0002 -0.0061 10 6 3.5806 -1.1970 -0.0008 11 6 4.3341 -2.5022 -0.0023 12 6 2.1982 -1.1970 0.0049 13 16 1.3174 -2.7230 0.0118 14 8 2.0552 -3.6161 -0.8111 15 8 -0.0469 -2.3999 -0.2202 16 7 1.3991 -3.3293 1.5506 17 6 0.8139 -2.5802 2.6652 18 1 0.4366 -1.6242 2.3020 19 6 -0.3368 -3.3852 3.2725 20 6 1.8669 -2.3381 3.7157 21 1 2.8716 -2.7060 3.5681 22 6 1.5479 -1.6471 4.8653 23 7 2.4667 -1.4363 5.7823 24 14 -0.1897 -1.0103 5.1204 25 1 -0.9990 -2.0442 5.8141 26 1 -0.1485 0.2229 5.9467 27 1 -0.8027 -0.7032 3.8032 28 1 -0.3633 -0.2829 0.9880 29 1 -0.3634 0.9970 -0.2491 30 1 -0.3632 -0.7143 -0.7389 31 1 1.6581 2.1325 0.0004 32 1 4.5781 2.5221 -2.1508 33 1 5.7537 3.5251 -1.2671 34 1 5.9168 1.7530 -1.2650 35 1 2.7168 3.6089 0.8846 36 1 3.8846 4.6093 -0.0123 37 1 2.7092 3.6061 -0.8954 38 1 5.9270 1.7570 1.2335 39 1 5.7639 3.5293 1.2309 40 1 4.5957 2.5293 2.1276 41 1 5.3517 0.0002 -0.0106 42 1 4.5113 -2.8183 -1.0303 43 1 5.2888 -2.3710 0.5071 44 1 3.7474 -3.2610 0.5153 45 1 1.8346 -4.1806 1.7139 46 1 -0.7725 -2.8276 4.1016 47 1 -1.0985 -3.5602 2.5127 48 1 0.0406 -4.3412 3.6356 49 1 2.2423 -0.9499 6.5910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058343367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:09 Heat of formation + Delta-G solvation = -57.839862 kcal Electronic energy + Delta-G solvation = -29721.745882 eV Core-core repulsion = 25968.621186 eV Total energy + Delta-G solvation = -3753.124696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.96702 -37.05170 -36.77092 -35.71401 -35.40609 -33.22675 -32.22548 -30.86222 -29.24923 -28.10760 -27.30203 -27.16949 -25.75916 -25.13247 -23.15132 -21.07537 -20.54593 -19.40463 -18.71872 -17.66471 -16.85826 -16.39602 -15.98999 -15.58293 -15.41675 -14.54617 -14.39575 -14.04018 -13.78830 -13.66817 -13.60161 -13.12990 -13.04903 -12.91083 -12.85274 -12.51353 -12.45452 -12.40089 -12.25070 -12.18210 -11.96470 -11.75305 -11.69197 -11.54714 -11.33407 -11.29403 -11.23195 -11.06576 -10.92624 -10.73349 -10.61877 -10.50722 -10.22698 -9.90440 -9.60635 -9.54778 -8.76266 -8.73978 -8.45187 -8.29003 -6.19827 -4.20948 0.93881 1.21131 1.61846 3.18706 3.29223 3.30988 3.51716 3.76520 4.27871 4.29065 4.49553 4.64086 4.85622 4.92125 4.97798 5.11298 5.13804 5.18494 5.40843 5.47287 5.54983 5.58396 5.64769 5.67546 5.69359 5.79475 5.80541 5.89750 5.91502 5.95887 6.00335 6.08639 6.09502 6.13623 6.16200 6.22835 6.28496 6.37607 6.45599 6.50555 6.54632 6.60745 6.70543 6.77893 6.89626 7.17940 7.20835 7.45014 7.82512 8.38406 8.83856 9.40496 10.92799 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010183 B = 0.005641 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2748.897565 B = 4962.786376 C = 6153.465082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.031 3.969 3 C -0.156 4.156 4 C -0.011 4.011 5 C -0.035 4.035 6 C -0.137 4.137 7 C -0.145 4.145 8 C -0.140 4.140 9 C -0.149 4.149 10 C 0.037 3.963 11 C -0.133 4.133 12 C -0.674 4.674 13 S 2.690 3.310 14 O -0.978 6.978 15 O -0.966 6.966 16 N -1.095 6.095 17 C 0.247 3.753 18 H 0.043 0.957 19 C -0.164 4.164 20 C -0.527 4.527 21 H 0.083 0.917 22 C 0.077 3.923 23 N -0.892 5.892 24 Si 0.876 3.124 25 H -0.275 1.275 26 H -0.294 1.294 27 H -0.263 1.263 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.059 0.941 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.411 0.589 46 H 0.048 0.952 47 H 0.040 0.960 48 H 0.059 0.941 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 6.470 -12.008 13.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.030 3.970 3 C -0.175 4.175 4 C -0.011 4.011 5 C -0.035 4.035 6 C -0.194 4.194 7 C -0.202 4.202 8 C -0.197 4.197 9 C -0.167 4.167 10 C 0.036 3.964 11 C -0.190 4.190 12 C -0.761 4.761 13 S 2.781 3.219 14 O -0.968 6.968 15 O -0.956 6.956 16 N -0.855 5.855 17 C 0.141 3.859 18 H 0.061 0.939 19 C -0.223 4.223 20 C -0.566 4.566 21 H 0.101 0.899 22 C -0.127 4.127 23 N -0.529 5.529 24 Si 0.706 3.294 25 H -0.201 1.201 26 H -0.222 1.222 27 H -0.188 1.188 28 H 0.103 0.897 29 H 0.080 0.920 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.142 0.858 42 H 0.106 0.894 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.245 0.755 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.078 0.922 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.183 6.340 -12.568 14.245 hybrid contribution -0.184 0.715 0.995 1.239 sum 2.000 7.055 -11.573 13.700 Atomic orbital electron populations 1.21726 0.89912 1.03706 1.06022 1.19616 0.96090 0.91630 0.89711 1.21082 0.93645 0.97625 1.05127 1.19978 0.93596 0.94299 0.93257 1.19604 0.95334 0.92031 0.96545 1.21880 0.99191 1.01886 0.96460 1.21976 0.98903 0.97029 1.02286 1.21895 0.99265 1.01753 0.96768 1.20799 0.99605 0.91343 1.05002 1.19416 0.91379 0.95933 0.89675 1.21160 1.00671 0.93525 1.03637 1.30400 1.05465 1.19555 1.20700 1.01745 0.74001 0.73348 0.72770 1.93542 1.73352 1.63306 1.66639 1.93502 1.33513 1.84045 1.84551 1.55287 1.73141 1.32480 1.24585 1.18890 0.91980 0.89698 0.85325 0.93945 1.22488 0.98607 1.01498 0.99712 1.21224 0.97314 1.36538 1.01517 0.89943 1.24881 0.96888 0.95265 0.95621 1.69868 1.33390 1.40818 1.08838 0.87040 0.85458 0.78089 0.78852 1.20148 1.22163 1.18798 0.89666 0.91958 0.86287 0.85261 0.92512 0.92289 0.92262 0.91924 0.92369 0.92256 0.92177 0.92367 0.91917 0.85758 0.89364 0.90647 0.90763 0.75482 0.93331 0.94062 0.92201 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.59 8.42 36.01 0.30 -2.29 16 2 C 0.03 0.54 5.88 -104.62 -0.62 -0.07 16 3 C -0.16 -2.44 8.60 -39.58 -0.34 -2.78 16 4 C -0.01 -0.16 4.76 -104.63 -0.50 -0.66 16 5 C -0.04 -0.41 0.85 -155.66 -0.13 -0.54 16 6 C -0.14 -1.34 8.29 37.16 0.31 -1.03 16 7 C -0.14 -1.49 7.13 37.16 0.27 -1.23 16 8 C -0.14 -1.62 8.29 37.16 0.31 -1.31 16 9 C -0.15 -2.30 8.37 -39.59 -0.33 -2.63 16 10 C 0.04 0.64 5.87 -104.62 -0.61 0.03 16 11 C -0.13 -2.07 8.52 36.01 0.31 -1.77 16 12 C -0.67 -12.38 5.86 -39.58 -0.23 -12.61 16 13 S 2.69 50.18 4.77 -107.50 -0.51 49.67 16 14 O -0.98 -18.71 15.40 -57.17 -0.88 -19.59 16 15 O -0.97 -18.92 13.24 -57.17 -0.76 -19.68 16 16 N -1.10 -21.15 4.92 -5.88 -0.03 -21.18 16 17 C 0.25 5.52 2.44 -69.08 -0.17 5.35 16 18 H 0.04 0.98 5.51 -51.93 -0.29 0.69 16 19 C -0.16 -3.43 9.00 37.16 0.33 -3.10 16 20 C -0.53 -13.75 9.42 -34.44 -0.32 -14.07 16 21 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 22 C 0.08 2.10 5.45 -17.82 -0.10 2.00 16 23 N -0.89 -25.94 13.96 55.43 0.77 -25.16 16 24 Si 0.88 20.86 24.38 -169.99 -4.14 16.72 16 25 H -0.27 -6.35 6.87 56.52 0.39 -5.96 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.26 -5.96 6.53 56.52 0.37 -5.59 16 28 H 0.08 1.53 6.70 -51.93 -0.35 1.18 16 29 H 0.06 0.83 7.94 -51.93 -0.41 0.42 16 30 H 0.12 2.00 5.48 -52.02 -0.28 1.71 16 31 H 0.13 1.71 5.83 -52.48 -0.31 1.40 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.57 7.39 -51.93 -0.38 0.18 16 35 H 0.06 0.69 7.51 -51.93 -0.39 0.30 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 38 H 0.06 0.69 7.39 -51.93 -0.38 0.31 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.12 1.62 7.10 -52.49 -0.37 1.25 16 42 H 0.09 1.25 8.09 -51.93 -0.42 0.83 16 43 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 44 H 0.07 1.22 5.71 -51.93 -0.30 0.92 16 45 H 0.41 7.12 8.96 -34.47 -0.31 6.81 16 46 H 0.05 1.05 3.28 -51.93 -0.17 0.88 16 47 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 380.17 15.07 5.73 5.73 Total: -1.00 -30.87 380.17 -9.09 -39.95 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -7.74 Total: 10.24 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: -1.53 Total: -36.70 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: 0.74 Total: -46.34 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -1.64 Total: -39.27 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.14 Total: 16.72 kcal Atomic # 16 Polarization: 50.18 SS G_CDS: -0.51 Total: 49.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.87 -9.09 -39.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058343367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.888 kcal (2) G-P(sol) polarization free energy of solvation -30.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds