Wall clock time and date at job start Tue Mar 31 2020 04:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38229 * 120.00319 * 2 1 4 4 C 1.38238 * 120.00047 * 180.24849 * 3 2 1 5 5 C 1.50696 * 120.00045 * 179.76304 * 4 3 2 6 6 C 1.53002 * 109.47575 * 240.02328 * 5 4 3 7 7 C 1.53003 * 109.47127 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.46970 * 120.02296 * 5 4 3 9 9 C 1.38233 * 119.99882 * 359.78875 * 4 3 2 10 10 C 1.38234 * 119.99702 * 359.95812 * 9 4 3 11 11 C 1.50704 * 119.99742 * 180.02562 * 10 9 4 12 12 C 1.38226 * 120.00528 * 0.02562 * 10 9 4 13 13 S 1.76200 * 120.00439 * 179.97438 * 12 10 9 14 14 O 1.42108 * 106.40015 * 329.70183 * 13 12 10 15 15 O 1.42100 * 106.40776 * 196.77940 * 13 12 10 16 16 N 1.65603 * 107.22020 * 83.23436 * 13 12 10 17 17 C 1.46499 * 119.99442 * 65.05400 * 16 13 12 18 18 H 1.09004 * 109.47605 * 24.78741 * 17 16 13 19 19 C 1.53001 * 109.47222 * 264.78268 * 17 16 13 20 20 C 1.50700 * 109.47091 * 144.78576 * 17 16 13 21 21 H 1.07996 * 119.99809 * 359.97438 * 20 17 16 22 22 C 1.37881 * 120.00259 * 180.02562 * 20 17 16 23 23 N 1.31514 * 119.99493 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 120.00062 * 180.02562 * 22 20 17 25 25 H 1.48495 * 109.46801 * 180.02562 * 24 22 20 26 26 H 1.48501 * 109.46713 * 299.99681 * 24 22 20 27 27 H 1.48491 * 109.47099 * 59.99514 * 24 22 20 28 28 H 1.08994 * 109.46748 * 254.06521 * 1 2 3 29 29 H 1.09003 * 109.46645 * 14.06532 * 1 2 3 30 30 H 1.09000 * 109.47161 * 134.06108 * 1 2 3 31 31 H 1.08002 * 119.99959 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.46797 * 59.99681 * 6 5 4 33 33 H 1.08992 * 109.47200 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.46849 * 300.00064 * 6 5 4 35 35 H 1.09006 * 109.47152 * 59.99749 * 7 5 4 36 36 H 1.09006 * 109.47086 * 179.97438 * 7 5 4 37 37 H 1.09000 * 109.47098 * 299.99630 * 7 5 4 38 38 H 1.08996 * 109.47256 * 60.00057 * 8 5 4 39 39 H 1.09006 * 109.47354 * 180.02562 * 8 5 4 40 40 H 1.09006 * 109.47100 * 300.00123 * 8 5 4 41 41 H 1.08004 * 119.99805 * 179.97438 * 9 4 3 42 42 H 1.08996 * 109.47123 * 270.01787 * 11 10 9 43 43 H 1.09000 * 109.47026 * 30.01711 * 11 10 9 44 44 H 1.08998 * 109.47411 * 150.01515 * 11 10 9 45 45 H 0.96998 * 120.00355 * 245.05372 * 16 13 12 46 46 H 1.09007 * 109.47113 * 179.97438 * 19 17 16 47 47 H 1.08997 * 109.47383 * 300.00311 * 19 17 16 48 48 H 1.09007 * 109.46801 * 60.00355 * 19 17 16 49 49 H 0.97010 * 119.99342 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5807 1.1970 -0.0052 5 6 4.3342 2.5020 -0.0106 6 6 5.2087 2.5809 -1.2636 7 6 3.3400 3.6650 -0.0085 8 6 5.2189 2.5852 1.2349 9 6 4.2718 -0.0002 -0.0060 10 6 3.5805 -1.1972 -0.0007 11 6 4.3339 -2.5024 -0.0009 12 6 2.1982 -1.1972 0.0049 13 16 1.3171 -2.7230 0.0109 14 8 2.1330 -3.6603 -0.6786 15 8 -0.0154 -2.4186 -0.3778 16 7 1.2396 -3.2382 1.5829 17 6 0.4890 -2.4609 2.5721 18 1 -0.2778 -1.8735 2.0670 19 6 1.4431 -1.5233 3.3147 20 6 -0.1630 -3.3970 3.5569 21 1 -0.0317 -4.4642 3.4557 22 6 -0.9280 -2.8911 4.5864 23 7 -1.0882 -1.5916 4.7093 24 14 -1.7355 -4.0515 5.8075 25 1 -2.4974 -3.2637 6.8094 26 1 -2.6609 -4.9624 5.0870 27 1 -0.6905 -4.8508 6.4961 28 1 -0.3632 -0.2821 0.9881 29 1 -0.3633 0.9969 -0.2498 30 1 -0.3633 -0.7147 -0.7385 31 1 1.6583 2.1324 0.0004 32 1 4.5784 2.5216 -2.1508 33 1 5.7541 3.5246 -1.2672 34 1 5.9170 1.7524 -1.2650 35 1 2.7170 3.6088 0.8842 36 1 3.8851 4.6090 -0.0119 37 1 2.7097 3.6058 -0.8958 38 1 5.9272 1.7567 1.2334 39 1 5.7637 3.5294 1.2313 40 1 4.5959 2.5290 2.1276 41 1 5.3518 -0.0002 -0.0104 42 1 4.5117 -2.8191 -1.0286 43 1 5.2882 -2.3711 0.5091 44 1 3.7468 -3.2610 0.5166 45 1 1.6911 -4.0545 1.8486 46 1 0.8845 -0.9446 4.0505 47 1 2.2098 -2.1107 3.8199 48 1 1.9146 -0.8461 2.6024 49 1 -1.6268 -1.2357 5.4335 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058343368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:13 Heat of formation + Delta-G solvation = -65.131882 kcal Electronic energy + Delta-G solvation = -29450.622629 eV Core-core repulsion = 25697.181727 eV Total energy + Delta-G solvation = -3753.440902 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.05283 -36.97916 -36.85866 -35.42280 -35.28700 -33.23581 -32.17858 -30.90909 -28.34097 -28.13001 -27.41928 -27.17692 -25.79954 -25.23148 -23.19267 -20.93778 -20.57508 -19.33482 -18.66635 -17.56205 -16.98203 -16.15520 -15.86047 -15.61529 -15.10722 -14.50602 -14.47589 -14.07160 -13.80170 -13.69270 -13.59355 -13.09641 -13.00449 -12.95403 -12.64352 -12.57775 -12.36884 -12.23851 -12.14242 -12.03886 -11.85423 -11.65198 -11.48978 -11.38407 -11.34054 -11.15014 -11.10133 -10.98701 -10.96177 -10.63880 -10.60624 -10.48497 -10.32351 -10.10867 -9.80855 -9.21089 -8.81198 -8.60803 -8.34481 -8.26299 -6.12638 -4.19364 0.96351 1.20449 1.54174 3.27896 3.32407 3.35040 3.53900 3.85887 4.34243 4.38878 4.40920 4.56279 4.83031 4.84655 4.92634 5.09952 5.14652 5.20130 5.33043 5.41129 5.44346 5.52294 5.59476 5.61310 5.68785 5.70353 5.72726 5.82119 5.84015 5.91473 6.02499 6.06692 6.07534 6.14068 6.23280 6.33517 6.41991 6.50238 6.56743 6.64881 6.78790 6.85570 6.91709 7.02816 7.13539 7.58502 7.67521 7.87354 8.01617 8.27483 8.82806 9.46235 10.93379 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.004103 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.799539 B = 6822.545825 C = 7685.086710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.041 3.959 3 C -0.157 4.157 4 C -0.014 4.014 5 C -0.035 4.035 6 C -0.137 4.137 7 C -0.145 4.145 8 C -0.139 4.139 9 C -0.155 4.155 10 C 0.028 3.972 11 C -0.134 4.134 12 C -0.679 4.679 13 S 2.686 3.314 14 O -0.982 6.982 15 O -0.960 6.960 16 N -1.100 6.100 17 C 0.269 3.731 18 H 0.053 0.947 19 C -0.159 4.159 20 C -0.521 4.521 21 H 0.064 0.936 22 C 0.065 3.935 23 N -0.888 5.888 24 Si 0.900 3.100 25 H -0.286 1.286 26 H -0.275 1.275 27 H -0.277 1.277 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.123 0.877 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.407 0.593 46 H 0.092 0.908 47 H 0.032 0.968 48 H 0.014 0.986 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.586 8.635 -8.844 16.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.039 3.961 3 C -0.175 4.175 4 C -0.014 4.014 5 C -0.035 4.035 6 C -0.195 4.195 7 C -0.203 4.203 8 C -0.196 4.196 9 C -0.174 4.174 10 C 0.026 3.974 11 C -0.191 4.191 12 C -0.765 4.765 13 S 2.777 3.223 14 O -0.972 6.972 15 O -0.950 6.950 16 N -0.861 5.861 17 C 0.165 3.835 18 H 0.071 0.929 19 C -0.218 4.218 20 C -0.561 4.561 21 H 0.082 0.918 22 C -0.138 4.138 23 N -0.527 5.527 24 Si 0.728 3.272 25 H -0.212 1.212 26 H -0.201 1.201 27 H -0.202 1.202 28 H 0.113 0.887 29 H 0.081 0.919 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.141 0.859 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.241 0.759 46 H 0.111 0.889 47 H 0.051 0.949 48 H 0.033 0.967 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.046 8.530 -9.506 16.886 hybrid contribution 0.241 -0.158 1.302 1.334 sum 11.287 8.372 -8.204 16.272 Atomic orbital electron populations 1.21895 0.89589 1.04222 1.06953 1.19683 0.96389 0.91408 0.88575 1.21134 0.93551 0.97829 1.05032 1.19981 0.93622 0.94220 0.93582 1.19598 0.95311 0.92132 0.96443 1.21880 0.99191 1.01840 0.96550 1.21983 0.98889 0.96958 1.02429 1.21890 0.99181 1.01766 0.96759 1.20790 0.99473 0.91380 1.05722 1.19471 0.91478 0.95885 0.90524 1.21211 1.00160 0.93615 1.04071 1.30636 1.05358 1.20210 1.20332 1.01876 0.73835 0.73296 0.73333 1.93527 1.69931 1.60954 1.72835 1.93470 1.35645 1.84150 1.81743 1.55547 1.66758 1.36052 1.27716 1.18645 0.88700 0.89927 0.86205 0.92908 1.22285 0.99229 0.99266 1.01023 1.21197 1.30766 0.93220 1.10923 0.91826 1.24896 0.96062 0.95299 0.97539 1.69854 1.39425 1.11030 1.32344 0.86521 0.79466 0.80634 0.80578 1.21197 1.20093 1.20219 0.88678 0.91888 0.85701 0.85195 0.92433 0.92282 0.92323 0.91887 0.92374 0.92148 0.92311 0.92306 0.92128 0.85910 0.89327 0.91207 0.90252 0.75896 0.88917 0.94887 0.96652 0.92571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 8.57 36.01 0.31 -2.63 16 2 C 0.04 0.69 5.48 -104.62 -0.57 0.12 16 3 C -0.16 -2.30 8.60 -39.58 -0.34 -2.64 16 4 C -0.01 -0.18 4.76 -104.63 -0.50 -0.68 16 5 C -0.03 -0.36 0.85 -155.66 -0.13 -0.49 16 6 C -0.14 -1.21 8.29 37.16 0.31 -0.90 16 7 C -0.15 -1.36 7.13 37.16 0.27 -1.09 16 8 C -0.14 -1.33 8.29 37.16 0.31 -1.02 16 9 C -0.15 -2.13 8.37 -39.58 -0.33 -2.46 16 10 C 0.03 0.44 5.87 -104.63 -0.61 -0.18 16 11 C -0.13 -1.90 8.47 36.01 0.30 -1.59 16 12 C -0.68 -11.93 4.90 -39.59 -0.19 -12.12 16 13 S 2.69 51.71 4.96 -107.50 -0.53 51.18 16 14 O -0.98 -19.18 14.82 -57.17 -0.85 -20.03 16 15 O -0.96 -20.47 13.02 -57.17 -0.74 -21.22 16 16 N -1.10 -22.29 5.43 -5.88 -0.03 -22.32 16 17 C 0.27 6.38 2.90 -69.08 -0.20 6.18 16 18 H 0.05 1.35 5.71 -51.93 -0.30 1.05 16 19 C -0.16 -3.61 9.29 37.16 0.35 -3.26 16 20 C -0.52 -13.60 8.76 -34.44 -0.30 -13.91 16 21 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 22 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 23 N -0.89 -24.00 11.32 55.43 0.63 -23.37 16 24 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 25 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H 0.09 1.85 6.35 -51.93 -0.33 1.52 16 29 H 0.06 0.90 7.94 -51.93 -0.41 0.48 16 30 H 0.13 2.28 5.27 -52.19 -0.27 2.00 16 31 H 0.13 1.65 5.83 -52.49 -0.31 1.34 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.50 7.39 -51.93 -0.38 0.12 16 35 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.55 7.51 -51.93 -0.39 0.16 16 38 H 0.06 0.55 7.39 -51.93 -0.38 0.16 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.12 1.38 7.10 -52.48 -0.37 1.01 16 42 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 43 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 44 H 0.08 1.21 5.81 -51.93 -0.30 0.91 16 45 H 0.41 7.50 8.83 -34.48 -0.30 7.19 16 46 H 0.09 2.32 6.07 -51.93 -0.32 2.00 16 47 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.01 0.31 6.62 -51.93 -0.34 -0.04 16 49 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 382.72 15.07 5.77 5.77 Total: -1.00 -29.64 382.72 -9.95 -39.59 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: -7.73 Total: 9.93 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: -1.44 Total: -35.06 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: 0.60 Total: -45.69 kcal Atomic # 8 Polarization: -39.65 SS G_CDS: -1.59 Total: -41.25 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 51.71 SS G_CDS: -0.53 Total: 51.18 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.64 -9.95 -39.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058343368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.543 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds