Wall clock time and date at job start Tue Mar 31 2020 04:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38229 * 120.00319 * 2 1 4 4 C 1.38238 * 120.00047 * 180.24849 * 3 2 1 5 5 C 1.50696 * 120.00045 * 179.76304 * 4 3 2 6 6 C 1.53002 * 109.47575 * 240.02328 * 5 4 3 7 7 C 1.53003 * 109.47127 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.46970 * 120.02296 * 5 4 3 9 9 C 1.38233 * 119.99882 * 359.78875 * 4 3 2 10 10 C 1.38234 * 119.99702 * 359.95812 * 9 4 3 11 11 C 1.50704 * 119.99742 * 180.02562 * 10 9 4 12 12 C 1.38226 * 120.00528 * 0.02562 * 10 9 4 13 13 S 1.76200 * 120.00439 * 179.97438 * 12 10 9 14 14 O 1.42108 * 106.40015 * 329.70183 * 13 12 10 15 15 O 1.42100 * 106.40776 * 196.77940 * 13 12 10 16 16 N 1.65603 * 107.22020 * 83.23436 * 13 12 10 17 17 C 1.46499 * 119.99442 * 65.05400 * 16 13 12 18 18 H 1.09004 * 109.47605 * 24.78741 * 17 16 13 19 19 C 1.53001 * 109.47222 * 264.78268 * 17 16 13 20 20 C 1.50700 * 109.47091 * 144.78576 * 17 16 13 21 21 H 1.07996 * 119.99809 * 359.97438 * 20 17 16 22 22 C 1.37881 * 120.00259 * 180.02562 * 20 17 16 23 23 N 1.31514 * 119.99493 * 359.97438 * 22 20 17 24 24 Si 1.86801 * 120.00062 * 180.02562 * 22 20 17 25 25 H 1.48495 * 109.46801 * 180.02562 * 24 22 20 26 26 H 1.48501 * 109.46713 * 299.99681 * 24 22 20 27 27 H 1.48491 * 109.47099 * 59.99514 * 24 22 20 28 28 H 1.08994 * 109.46748 * 254.06521 * 1 2 3 29 29 H 1.09003 * 109.46645 * 14.06532 * 1 2 3 30 30 H 1.09000 * 109.47161 * 134.06108 * 1 2 3 31 31 H 1.08002 * 119.99959 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.46797 * 59.99681 * 6 5 4 33 33 H 1.08992 * 109.47200 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.46849 * 300.00064 * 6 5 4 35 35 H 1.09006 * 109.47152 * 59.99749 * 7 5 4 36 36 H 1.09006 * 109.47086 * 179.97438 * 7 5 4 37 37 H 1.09000 * 109.47098 * 299.99630 * 7 5 4 38 38 H 1.08996 * 109.47256 * 60.00057 * 8 5 4 39 39 H 1.09006 * 109.47354 * 180.02562 * 8 5 4 40 40 H 1.09006 * 109.47100 * 300.00123 * 8 5 4 41 41 H 1.08004 * 119.99805 * 179.97438 * 9 4 3 42 42 H 1.08996 * 109.47123 * 270.01787 * 11 10 9 43 43 H 1.09000 * 109.47026 * 30.01711 * 11 10 9 44 44 H 1.08998 * 109.47411 * 150.01515 * 11 10 9 45 45 H 0.96998 * 120.00355 * 245.05372 * 16 13 12 46 46 H 1.09007 * 109.47113 * 179.97438 * 19 17 16 47 47 H 1.08997 * 109.47383 * 300.00311 * 19 17 16 48 48 H 1.09007 * 109.46801 * 60.00355 * 19 17 16 49 49 H 0.97010 * 119.99342 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5807 1.1970 -0.0052 5 6 4.3342 2.5020 -0.0106 6 6 5.2087 2.5809 -1.2636 7 6 3.3400 3.6650 -0.0085 8 6 5.2189 2.5852 1.2349 9 6 4.2718 -0.0002 -0.0060 10 6 3.5805 -1.1972 -0.0007 11 6 4.3339 -2.5024 -0.0009 12 6 2.1982 -1.1972 0.0049 13 16 1.3171 -2.7230 0.0109 14 8 2.1330 -3.6603 -0.6786 15 8 -0.0154 -2.4186 -0.3778 16 7 1.2396 -3.2382 1.5829 17 6 0.4890 -2.4609 2.5721 18 1 -0.2778 -1.8735 2.0670 19 6 1.4431 -1.5233 3.3147 20 6 -0.1630 -3.3970 3.5569 21 1 -0.0317 -4.4642 3.4557 22 6 -0.9280 -2.8911 4.5864 23 7 -1.0882 -1.5916 4.7093 24 14 -1.7355 -4.0515 5.8075 25 1 -2.4974 -3.2637 6.8094 26 1 -2.6609 -4.9624 5.0870 27 1 -0.6905 -4.8508 6.4961 28 1 -0.3632 -0.2821 0.9881 29 1 -0.3633 0.9969 -0.2498 30 1 -0.3633 -0.7147 -0.7385 31 1 1.6583 2.1324 0.0004 32 1 4.5784 2.5216 -2.1508 33 1 5.7541 3.5246 -1.2672 34 1 5.9170 1.7524 -1.2650 35 1 2.7170 3.6088 0.8842 36 1 3.8851 4.6090 -0.0119 37 1 2.7097 3.6058 -0.8958 38 1 5.9272 1.7567 1.2334 39 1 5.7637 3.5294 1.2313 40 1 4.5959 2.5290 2.1276 41 1 5.3518 -0.0002 -0.0104 42 1 4.5117 -2.8191 -1.0286 43 1 5.2882 -2.3711 0.5091 44 1 3.7468 -3.2610 0.5166 45 1 1.6911 -4.0545 1.8486 46 1 0.8845 -0.9446 4.0505 47 1 2.2098 -2.1107 3.8199 48 1 1.9146 -0.8461 2.6024 49 1 -1.6268 -1.2357 5.4335 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058343368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:12 Heat of formation + Delta-G solvation = -81.910756 kcal Electronic energy + Delta-G solvation = -29451.350215 eV Core-core repulsion = 25697.181727 eV Total energy + Delta-G solvation = -3754.168488 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.166 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.13964 -38.54005 -37.83887 -37.21868 -36.86375 -34.46503 -34.10811 -31.99553 -30.12128 -29.02864 -28.44354 -28.09984 -27.22659 -26.82810 -24.28142 -22.81008 -21.76776 -20.67866 -19.83013 -19.22724 -18.42424 -17.72218 -17.34005 -16.87186 -16.60881 -16.08969 -15.46733 -15.35577 -15.08332 -14.83185 -14.69716 -14.57906 -14.25626 -14.10738 -14.02778 -13.94879 -13.69164 -13.63227 -13.30959 -13.24042 -13.10844 -12.92187 -12.79444 -12.78714 -12.58662 -12.52948 -12.40324 -12.36343 -12.21577 -12.11507 -11.99942 -11.88382 -11.78787 -11.46633 -11.14486 -11.07983 -10.57567 -10.11917 -9.93468 -9.54058 -8.13174 -6.26696 -0.45860 -0.11055 0.36126 1.45709 1.47047 1.54223 2.16067 2.44162 2.50063 2.88749 3.16488 3.42287 3.50967 3.69124 3.75974 4.04588 4.08953 4.24124 4.28435 4.36056 4.46161 4.53340 4.55617 4.74185 4.75545 4.77745 4.79823 4.84449 4.90390 4.91912 4.92914 5.02471 5.03020 5.04633 5.09533 5.14795 5.20396 5.24550 5.26148 5.36047 5.43754 5.44259 5.52892 5.59751 5.60333 5.78391 5.96513 6.03509 6.14121 6.42302 6.82789 7.42078 8.91773 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.004103 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.799539 B = 6822.545825 C = 7685.086710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.020 3.980 3 C -0.162 4.162 4 C -0.007 4.007 5 C -0.034 4.034 6 C -0.136 4.136 7 C -0.147 4.147 8 C -0.139 4.139 9 C -0.152 4.152 10 C 0.018 3.982 11 C -0.139 4.139 12 C -0.693 4.693 13 S 2.693 3.307 14 O -0.987 6.987 15 O -0.989 6.989 16 N -1.102 6.102 17 C 0.275 3.725 18 H 0.029 0.971 19 C -0.143 4.143 20 C -0.544 4.544 21 H 0.063 0.937 22 C 0.020 3.980 23 N -0.911 5.911 24 Si 0.959 3.041 25 H -0.283 1.283 26 H -0.275 1.275 27 H -0.269 1.269 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.148 0.852 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.045 0.955 41 H 0.154 0.846 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.414 0.586 46 H 0.069 0.931 47 H 0.035 0.965 48 H 0.029 0.971 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.924 9.892 -8.965 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.019 3.981 3 C -0.180 4.180 4 C -0.008 4.008 5 C -0.034 4.034 6 C -0.193 4.193 7 C -0.204 4.204 8 C -0.196 4.196 9 C -0.170 4.170 10 C 0.016 3.984 11 C -0.195 4.195 12 C -0.784 4.784 13 S 2.788 3.212 14 O -0.978 6.978 15 O -0.979 6.979 16 N -0.862 5.862 17 C 0.170 3.830 18 H 0.047 0.953 19 C -0.202 4.202 20 C -0.583 4.583 21 H 0.082 0.918 22 C -0.180 4.180 23 N -0.550 5.550 24 Si 0.785 3.215 25 H -0.208 1.208 26 H -0.201 1.201 27 H -0.194 1.194 28 H 0.084 0.916 29 H 0.107 0.893 30 H 0.129 0.871 31 H 0.165 0.835 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.097 0.903 40 H 0.064 0.936 41 H 0.171 0.829 42 H 0.112 0.888 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.249 0.751 46 H 0.087 0.913 47 H 0.054 0.946 48 H 0.048 0.952 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 13.374 9.736 -9.630 19.141 hybrid contribution -0.411 -0.461 1.266 1.408 sum 12.962 9.275 -8.364 18.000 Atomic orbital electron populations 1.21776 0.90556 1.05259 1.04803 1.19747 0.96024 0.92284 0.90082 1.21389 0.94531 0.97557 1.04554 1.20432 0.93270 0.95833 0.91228 1.19698 0.95535 0.90515 0.97659 1.21880 0.98976 1.03155 0.95264 1.22005 0.98869 0.97545 1.02018 1.21903 0.98968 1.03147 0.95548 1.21151 1.01009 0.90593 1.04269 1.19760 0.90783 0.97462 0.90395 1.21298 1.01158 0.92469 1.04610 1.30245 1.06259 1.18793 1.23063 1.01413 0.73380 0.73806 0.72641 1.93513 1.69775 1.61865 1.72628 1.93447 1.37696 1.84708 1.82019 1.55381 1.66772 1.36467 1.27535 1.18344 0.88674 0.89776 0.86186 0.95346 1.22068 0.98661 0.98976 1.00534 1.21571 1.31362 0.93684 1.11724 0.91833 1.25635 0.96568 0.96683 0.99150 1.69974 1.39831 1.12336 1.32828 0.85596 0.78626 0.78820 0.78502 1.20790 1.20079 1.19362 0.91576 0.89293 0.87141 0.83471 0.92925 0.90353 0.91870 0.92800 0.90468 0.92101 0.91859 0.90272 0.93612 0.82864 0.88831 0.88192 0.91795 0.75134 0.91251 0.94559 0.95191 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.01 8.57 71.24 0.61 -5.40 16 2 C 0.02 0.69 5.48 -19.86 -0.11 0.58 16 3 C -0.16 -4.55 8.60 22.27 0.19 -4.36 16 4 C -0.01 -0.18 4.76 -19.87 -0.09 -0.27 16 5 C -0.03 -0.59 0.85 -52.93 -0.05 -0.63 16 6 C -0.14 -1.88 8.29 71.98 0.60 -1.28 16 7 C -0.15 -2.33 7.13 71.98 0.51 -1.81 16 8 C -0.14 -2.19 8.29 71.98 0.60 -1.59 16 9 C -0.15 -3.75 8.37 22.27 0.19 -3.57 16 10 C 0.02 0.53 5.87 -19.87 -0.12 0.41 16 11 C -0.14 -3.71 8.47 71.24 0.60 -3.10 16 12 C -0.69 -24.43 4.90 22.27 0.11 -24.32 16 13 S 2.69 106.83 4.96 -56.49 -0.28 106.55 16 14 O -0.99 -39.09 14.82 -128.00 -1.90 -40.99 16 15 O -0.99 -44.33 13.02 -128.00 -1.67 -45.99 16 16 N -1.10 -45.95 5.43 -172.52 -0.94 -46.88 16 17 C 0.28 13.47 2.90 44.25 0.13 13.60 16 18 H 0.03 1.55 5.71 -2.39 -0.01 1.53 16 19 C -0.14 -6.62 9.29 71.98 0.67 -5.96 16 20 C -0.54 -28.97 8.76 25.60 0.22 -28.74 16 21 H 0.06 3.29 7.81 -2.91 -0.02 3.26 16 22 C 0.02 1.07 5.30 84.66 0.45 1.52 16 23 N -0.91 -50.22 11.32 21.45 0.24 -49.98 16 24 Si 0.96 42.35 29.54 68.60 2.03 44.38 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 27 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 28 H 0.07 2.74 6.35 -2.39 -0.02 2.73 16 29 H 0.09 2.58 7.94 -2.39 -0.02 2.56 16 30 H 0.11 4.27 5.27 -6.58 -0.03 4.23 16 31 H 0.15 3.52 5.83 -2.91 -0.02 3.50 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.82 7.39 -2.39 -0.02 0.81 16 35 H 0.05 0.95 7.51 -2.38 -0.02 0.93 16 36 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 37 H 0.06 0.95 7.51 -2.39 -0.02 0.94 16 38 H 0.06 0.94 7.39 -2.39 -0.02 0.92 16 39 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.15 2.81 7.10 -2.91 -0.02 2.79 16 42 H 0.09 2.38 8.08 -2.39 -0.02 2.36 16 43 H 0.10 2.01 8.09 -2.39 -0.02 1.99 16 44 H 0.06 1.90 5.81 -2.39 -0.01 1.89 16 45 H 0.41 15.64 8.83 -96.74 -0.85 14.79 16 46 H 0.07 3.56 6.07 -2.38 -0.01 3.54 16 47 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.03 1.25 6.62 -2.38 -0.02 1.23 16 49 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 Total: -1.00 -64.52 382.72 2.08 -62.43 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: 0.08 Total: 35.39 kcal Atomic # 6 Polarization: -69.42 SS G_CDS: 4.51 Total: -64.91 kcal Atomic # 7 Polarization: -96.17 SS G_CDS: -0.69 Total: -96.86 kcal Atomic # 8 Polarization: -83.42 SS G_CDS: -3.56 Total: -86.98 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Atomic # 16 Polarization: 106.83 SS G_CDS: -0.28 Total: 106.55 kcal Total: -64.52 2.08 -62.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058343368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.476 kcal (2) G-P(sol) polarization free energy of solvation -64.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds