Wall clock time and date at job start Tue Mar 31 2020 06:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86803 * 119.99944 * 2 1 4 4 H 1.48496 * 109.46965 * 239.99912 * 3 2 1 5 5 H 1.48494 * 109.47171 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47042 * 119.99896 * 3 2 1 7 7 C 1.38951 * 119.99786 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99538 * 197.98681 * 7 2 1 9 9 N 1.37096 * 120.00383 * 17.99446 * 7 2 1 10 10 C 1.34780 * 119.99855 * 44.47958 * 9 7 2 11 11 O 1.21296 * 119.99901 * 0.02562 * 10 9 7 12 12 C 1.50697 * 119.99738 * 180.02562 * 10 9 7 13 13 C 1.53004 * 109.46621 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46564 * 180.02562 * 13 12 10 15 15 C 1.50708 * 109.47018 * 179.97438 * 14 13 12 16 16 N 1.29837 * 118.31452 * 359.97438 * 15 14 13 17 17 C 1.35650 * 121.61719 * 180.02562 * 16 15 14 18 18 C 1.39651 * 121.64951 * 179.97438 * 17 16 15 19 19 C 1.37666 * 119.68469 * 180.02562 * 18 17 16 20 20 C 1.38889 * 120.82030 * 0.02563 * 19 18 17 21 21 C 1.37765 * 120.56997 * 359.92779 * 20 19 18 22 22 C 1.39334 * 119.51409 * 0.09495 * 21 20 19 23 23 C 1.47049 * 121.93270 * 179.65114 * 22 21 20 24 24 O 1.21723 * 121.29629 * 0.27028 * 23 22 21 25 25 N 1.35352 * 117.40528 * 179.73128 * 23 22 21 26 26 H 0.96991 * 119.69767 * 180.25639 * 25 23 22 27 27 C 1.46493 * 120.00099 * 224.48597 * 9 7 2 28 28 C 1.53001 * 117.49827 * 3.26818 * 27 9 7 29 29 C 1.53003 * 117.50033 * 294.60905 * 27 9 7 30 30 H 0.96998 * 119.99725 * 354.95678 * 1 2 3 31 31 H 1.08994 * 109.47479 * 60.00545 * 12 10 9 32 32 H 1.08999 * 109.47315 * 300.00049 * 12 10 9 33 33 H 1.08990 * 109.47507 * 60.00233 * 13 12 10 34 34 H 1.09006 * 109.47061 * 299.99118 * 13 12 10 35 35 H 1.08994 * 109.47740 * 59.99855 * 14 13 12 36 36 H 1.08999 * 109.47110 * 299.99323 * 14 13 12 37 37 H 1.07993 * 120.15587 * 0.02562 * 18 17 16 38 38 H 1.07996 * 119.58726 * 179.97438 * 19 18 17 39 39 H 1.07993 * 119.71263 * 179.97438 * 20 19 18 40 40 H 1.08002 * 120.24016 * 180.02562 * 21 20 19 41 41 H 1.08999 * 115.55372 * 148.93770 * 27 9 7 42 42 H 1.09002 * 117.50133 * 0.02562 * 28 27 9 43 43 H 1.09001 * 117.49821 * 145.02016 * 28 27 9 44 44 H 1.09001 * 117.50198 * 214.98046 * 29 27 9 45 45 H 1.09000 * 117.49644 * 359.97438 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2126 7 6 2.0088 -1.2034 0.0005 8 1 3.0492 -1.2261 0.2894 9 7 1.3737 -2.3618 -0.3657 10 6 0.5766 -2.3787 -1.4525 11 8 0.4217 -1.3691 -2.1067 12 6 -0.1220 -3.6520 -1.8547 13 6 -0.9568 -3.4002 -3.1120 14 6 -1.6666 -4.6928 -3.5200 15 6 -2.4894 -4.4448 -4.7580 16 7 -2.4842 -3.2526 -5.2723 17 6 -3.2006 -2.9550 -6.3851 18 6 -3.1960 -1.6729 -6.9385 19 6 -3.9386 -1.4154 -8.0687 20 6 -4.6942 -2.4156 -8.6668 21 6 -4.7142 -3.6884 -8.1401 22 6 -3.9699 -3.9697 -6.9963 23 6 -3.9585 -5.3072 -6.3851 24 8 -4.5994 -6.2257 -6.8618 25 7 -3.1988 -5.4799 -5.2783 26 1 -3.1640 -6.3496 -4.8504 27 6 1.5611 -3.5812 0.4242 28 6 2.4159 -3.4791 1.6890 29 6 2.9616 -4.1967 0.4519 30 1 -0.4850 0.8368 0.0738 31 1 -0.7738 -3.9802 -1.0451 32 1 0.6195 -4.4241 -2.0599 33 1 -0.3048 -3.0723 -3.9214 34 1 -1.6984 -2.6280 -2.9071 35 1 -2.3187 -5.0204 -2.7104 36 1 -0.9253 -5.4653 -3.7247 37 1 -2.6126 -0.8871 -6.4820 38 1 -3.9342 -0.4232 -8.4951 39 1 -5.2705 -2.1938 -9.5528 40 1 -5.3033 -4.4623 -8.6097 41 1 0.7112 -4.2633 0.4449 42 1 2.8385 -2.5046 1.9337 43 1 2.1285 -4.0943 2.5417 44 1 3.0331 -5.2836 0.4912 45 1 3.7434 -3.6945 -0.1180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058377522.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:48 Heat of formation + Delta-G solvation = 10.049049 kcal Electronic energy + Delta-G solvation = -28643.791955 eV Core-core repulsion = 24627.315370 eV Total energy + Delta-G solvation = -4016.476585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.68082 -38.63106 -38.52844 -37.96647 -36.14581 -34.16116 -33.75918 -32.67286 -31.41515 -30.94666 -30.11974 -27.86889 -25.21983 -24.73655 -23.43584 -22.24621 -21.71305 -21.25541 -20.85008 -19.44788 -19.12354 -18.61762 -17.62213 -16.30691 -16.27332 -16.00309 -15.89352 -15.15072 -15.12816 -14.95231 -14.64057 -14.31496 -14.06966 -13.79501 -13.71135 -13.55034 -13.18227 -12.77722 -12.35591 -12.18686 -11.95478 -11.86436 -11.68726 -11.55168 -11.07353 -10.93557 -10.81970 -10.73791 -10.58674 -10.50220 -10.45895 -10.23750 -10.10674 -9.95364 -9.92830 -9.71012 -9.33582 -8.65361 -8.20963 -7.93196 -6.96690 -6.06510 -3.81853 0.36552 0.64699 2.03458 2.45796 2.60430 3.32691 3.39930 3.43349 3.74890 3.82274 4.05752 4.18698 4.30430 4.44057 4.66858 4.75411 4.80632 4.88121 5.01706 5.13528 5.16069 5.16955 5.33461 5.43768 5.53225 5.59674 5.73968 5.76573 5.80215 5.83714 5.91042 5.97352 5.99648 6.14629 6.19084 6.21665 6.23018 6.29848 6.33404 6.53348 6.61057 6.69548 6.78831 6.94912 6.98694 7.51242 7.65907 7.81880 8.32766 9.12832 9.22826 9.73077 10.37435 11.02704 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014042 B = 0.002662 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.562249 B =10516.483705 C =12252.755971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.349 4.349 8 H 0.074 0.926 9 N -0.432 5.432 10 C 0.484 3.516 11 O -0.529 6.529 12 C -0.136 4.136 13 C -0.079 4.079 14 C -0.081 4.081 15 C 0.400 3.600 16 N -0.503 5.503 17 C 0.161 3.839 18 C -0.108 4.108 19 C -0.074 4.074 20 C -0.145 4.145 21 C -0.043 4.043 22 C -0.207 4.207 23 C 0.552 3.448 24 O -0.521 6.521 25 N -0.653 5.653 26 H 0.418 0.582 27 C 0.079 3.921 28 C -0.176 4.176 29 C -0.209 4.209 30 H 0.264 0.736 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.102 0.898 42 H 0.106 0.894 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 -10.333 -9.689 15.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.476 4.476 8 H 0.092 0.908 9 N -0.154 5.154 10 C 0.271 3.729 11 O -0.406 6.406 12 C -0.177 4.177 13 C -0.118 4.118 14 C -0.120 4.120 15 C 0.132 3.868 16 N -0.224 5.224 17 C 0.052 3.948 18 C -0.127 4.127 19 C -0.093 4.093 20 C -0.163 4.163 21 C -0.063 4.063 22 C -0.213 4.213 23 C 0.345 3.655 24 O -0.396 6.396 25 N -0.297 5.297 26 H 0.256 0.744 27 C -0.028 4.028 28 C -0.214 4.214 29 C -0.248 4.248 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.162 0.838 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.119 0.881 42 H 0.124 0.876 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.835 -9.306 -10.327 15.491 hybrid contribution -0.084 -0.287 0.078 0.309 sum -6.918 -9.593 -10.248 15.650 Atomic orbital electron populations 1.69805 1.06472 1.27385 1.43057 1.25217 0.94811 0.99252 0.94311 0.86300 0.79301 0.82132 0.78395 1.19983 1.21233 1.20510 1.18762 0.94245 0.83906 1.50710 0.90821 1.42805 1.44442 1.06756 1.21404 1.19775 0.82805 0.88946 0.81326 1.90541 1.62286 1.34900 1.52915 1.21649 0.99300 0.98614 0.98127 1.21031 0.99330 0.94105 0.97298 1.21009 0.97950 1.02211 0.90831 1.23180 0.87513 0.82654 0.93417 1.68751 1.24619 1.16179 1.12840 1.18935 0.91561 0.93798 0.90532 1.20996 1.00367 0.95191 0.96158 1.21329 0.94115 0.99554 0.94286 1.21163 1.01173 0.92774 1.01208 1.20966 0.95360 0.97075 0.92851 1.20559 1.06151 0.93341 1.01207 1.18421 0.78575 0.88954 0.79566 1.90883 1.42845 1.43723 1.62171 1.44550 1.42720 1.15031 1.27438 0.74380 1.21668 0.92335 0.91728 0.97050 1.23067 1.04750 1.02428 0.91119 1.23321 1.00020 0.98325 1.03168 0.92639 0.90920 0.90931 0.90399 0.90061 0.88397 0.88437 0.83820 0.84852 0.85123 0.84728 0.88088 0.87556 0.89923 0.89918 0.89199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.43 11.74 55.50 0.65 -23.78 16 2 C 0.07 2.08 4.39 -17.47 -0.08 2.00 16 3 Si 0.91 21.87 29.59 -169.99 -5.03 16.84 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.35 -9.40 7.91 -14.93 -0.12 -9.52 16 8 H 0.07 1.93 7.27 -52.49 -0.38 1.55 16 9 N -0.43 -10.49 2.83 -107.73 -0.31 -10.80 16 10 C 0.48 11.69 6.96 -10.98 -0.08 11.62 16 11 O -0.53 -15.11 13.76 5.54 0.08 -15.04 16 12 C -0.14 -2.31 4.32 -27.88 -0.12 -2.43 16 13 C -0.08 -1.24 3.68 -26.73 -0.10 -1.34 16 14 C -0.08 -0.83 5.62 -27.88 -0.16 -0.99 16 15 C 0.40 4.80 7.62 -155.22 -1.18 3.61 16 16 N -0.50 -7.39 8.84 -8.19 -0.07 -7.46 16 17 C 0.16 2.26 6.63 -84.51 -0.56 1.70 16 18 C -0.11 -1.33 10.03 -39.26 -0.39 -1.73 16 19 C -0.07 -0.71 10.00 -39.55 -0.40 -1.11 16 20 C -0.14 -1.35 10.02 -39.51 -0.40 -1.74 16 21 C -0.04 -0.49 9.68 -39.35 -0.38 -0.87 16 22 C -0.21 -2.76 5.89 -104.78 -0.62 -3.38 16 23 C 0.55 7.39 7.99 -12.43 -0.10 7.29 16 24 O -0.52 -7.98 17.48 5.17 0.09 -7.89 16 25 N -0.65 -6.96 5.27 -10.46 -0.06 -7.01 16 26 H 0.42 3.11 8.75 -40.82 -0.36 2.75 16 27 C 0.08 1.50 5.87 -67.93 -0.40 1.10 16 28 C -0.18 -3.08 9.80 -26.69 -0.26 -3.34 16 29 C -0.21 -3.42 10.36 -26.69 -0.28 -3.70 16 30 H 0.26 7.45 8.32 -40.82 -0.34 7.11 16 31 H 0.07 1.12 7.57 -51.93 -0.39 0.73 16 32 H 0.07 1.05 8.11 -51.93 -0.42 0.63 16 33 H 0.08 1.36 7.98 -51.93 -0.41 0.95 16 34 H 0.08 1.51 7.98 -51.93 -0.41 1.10 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.13 1.38 7.83 -52.49 -0.41 0.97 16 41 H 0.10 1.67 6.96 -51.93 -0.36 1.31 16 42 H 0.11 2.10 6.73 -51.93 -0.35 1.75 16 43 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 LS Contribution 379.98 15.07 5.73 5.73 Total: -1.00 -35.97 379.98 -10.55 -46.52 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -6.02 Total: 5.72 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -5.61 Total: -2.82 kcal Atomic # 7 Polarization: -49.27 SS G_CDS: 0.22 Total: -49.05 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.17 Total: -22.93 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.97 -10.55 -46.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058377522.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.565 kcal (2) G-P(sol) polarization free energy of solvation -35.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds