Wall clock time and date at job start Tue Mar 31 2020 04:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30880 * 125.87782 * 2 1 4 4 N 1.40084 * 108.21925 * 179.97438 * 3 2 1 5 5 C 1.40175 * 126.05571 * 179.97438 * 4 3 2 6 6 C 1.38838 * 120.06879 * 325.02069 * 5 4 3 7 7 C 1.38113 * 119.93734 * 179.97438 * 6 5 4 8 8 C 1.38274 * 120.06682 * 0.02562 * 7 6 5 9 9 C 1.38278 * 120.13486 * 359.97438 * 8 7 6 10 10 C 1.38119 * 120.06535 * 0.02605 * 9 8 7 11 11 C 1.35231 * 107.89405 * 0.22384 * 4 3 2 12 12 C 1.50691 * 126.14526 * 179.77130 * 11 4 3 13 13 C 1.35326 * 107.70905 * 359.63536 * 11 4 3 14 14 C 1.50703 * 126.03153 * 180.13910 * 13 11 4 15 15 C 1.50698 * 109.46970 * 270.24311 * 14 13 11 16 16 O 1.21290 * 119.99852 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99875 * 180.02562 * 15 14 13 18 18 C 1.37107 * 120.00067 * 180.02562 * 17 15 14 19 19 H 1.07999 * 120.00287 * 140.21310 * 18 17 15 20 20 C 1.38947 * 119.99444 * 320.21372 * 18 17 15 21 21 N 1.31412 * 119.99764 * 160.63810 * 20 18 17 22 22 Si 1.86797 * 120.00539 * 340.63661 * 20 18 17 23 23 H 1.48497 * 109.47316 * 93.76214 * 22 20 18 24 24 H 1.48494 * 109.47287 * 213.76954 * 22 20 18 25 25 H 1.48509 * 109.46762 * 333.76467 * 22 20 18 26 26 C 1.46498 * 119.99859 * 359.97438 * 17 15 14 27 27 C 1.53008 * 117.49779 * 182.42122 * 26 17 15 28 28 C 1.53001 * 117.49655 * 113.76347 * 26 17 15 29 29 H 1.09000 * 109.46992 * 90.02977 * 1 2 3 30 30 H 1.08993 * 109.47363 * 210.03052 * 1 2 3 31 31 H 1.08996 * 109.47123 * 330.03299 * 1 2 3 32 32 H 1.08007 * 120.02674 * 0.26023 * 6 5 4 33 33 H 1.08006 * 119.96578 * 179.97438 * 7 6 5 34 34 H 1.08007 * 119.93705 * 179.97438 * 8 7 6 35 35 H 1.07999 * 119.97010 * 180.02562 * 9 8 7 36 36 H 1.07997 * 120.03426 * 179.97438 * 10 9 8 37 37 H 1.09000 * 109.47159 * 90.02842 * 12 11 4 38 38 H 1.09009 * 109.47040 * 210.02440 * 12 11 4 39 39 H 1.08995 * 109.47392 * 330.02329 * 12 11 4 40 40 H 1.08995 * 109.47184 * 30.24503 * 14 13 11 41 41 H 1.09003 * 109.46622 * 150.24097 * 14 13 11 42 42 H 0.96997 * 120.00218 * 179.97438 * 21 20 18 43 43 H 1.08993 * 115.55455 * 328.08870 * 26 17 15 44 44 H 1.08997 * 117.49642 * 0.02562 * 27 26 17 45 45 H 1.08999 * 117.50078 * 145.01997 * 27 26 17 46 46 H 1.08999 * 117.49982 * 214.97737 * 28 26 17 47 47 H 1.09006 * 117.49938 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2740 1.0605 0.0000 4 7 3.6089 0.6355 0.0006 5 6 4.7388 1.4651 0.0003 6 6 4.7171 2.6699 -0.6894 7 6 5.8317 3.4854 -0.6874 8 6 6.9688 3.1028 0.0000 9 6 6.9936 1.9035 0.6879 10 6 5.8820 1.0837 0.6896 11 6 3.6144 -0.7168 -0.0041 12 6 4.8350 -1.6006 -0.0101 13 6 2.3270 -1.1337 0.0007 14 6 1.8592 -2.5663 0.0010 15 6 1.7032 -3.0440 -1.4197 16 8 1.9474 -2.2948 -2.3417 17 7 1.2913 -4.3035 -1.6657 18 6 1.1499 -4.7384 -2.9583 19 1 1.4523 -5.7397 -3.2274 20 6 0.6176 -3.8907 -3.9220 21 7 0.8218 -4.1351 -5.1970 22 14 -0.3884 -2.4040 -3.4055 23 1 0.4957 -1.2140 -3.3188 24 1 -1.4556 -2.1559 -4.4078 25 1 -1.0051 -2.6602 -2.0790 26 6 0.9958 -5.2082 -0.5520 27 6 0.5873 -6.6421 -0.8960 28 6 -0.4565 -5.6536 -0.3700 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8896 0.5143 31 1 -0.3633 0.8902 0.5133 32 1 3.8277 2.9712 -1.2230 33 1 5.8154 4.4226 -1.2241 34 1 7.8394 3.7420 -0.0002 35 1 7.8830 1.6075 1.2243 36 1 5.9021 0.1469 1.2266 37 1 5.1315 -1.8176 1.0161 38 1 4.6061 -2.5326 -0.5270 39 1 5.6501 -1.0909 -0.5238 40 1 2.5924 -3.1878 0.5149 41 1 0.9004 -2.6352 0.5149 42 1 0.4500 -3.5436 -5.8698 43 1 1.5924 -5.0570 0.3475 44 1 0.5388 -6.9123 -1.9508 45 1 0.9147 -7.4340 -0.2224 46 1 -0.8154 -5.7957 0.6494 47 1 -1.1923 -5.2731 -1.0786 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058378456.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:17 Heat of formation + Delta-G solvation = 115.171340 kcal Electronic energy + Delta-G solvation = -29860.294353 eV Core-core repulsion = 26011.520786 eV Total energy + Delta-G solvation = -3848.773567 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.55060 -39.26124 -38.82411 -36.38566 -34.23855 -33.09881 -32.64756 -31.46646 -31.11587 -30.58674 -29.06614 -27.17474 -26.25721 -24.34357 -22.87112 -22.41146 -21.91413 -21.37705 -19.82113 -19.57110 -18.74338 -17.51496 -16.98308 -16.40877 -16.18600 -15.54171 -15.38446 -14.73859 -14.57212 -14.21389 -14.08094 -13.79035 -13.72424 -13.49793 -13.27482 -13.10345 -12.91101 -12.88755 -12.63712 -12.45713 -12.20709 -12.14233 -11.92438 -11.62877 -11.57400 -11.39886 -11.21215 -11.10600 -10.68612 -10.30486 -10.29841 -9.99123 -9.93531 -9.72695 -9.57859 -9.20713 -8.62830 -8.45062 -8.41776 -7.82587 -7.43975 -6.14141 -3.90111 0.84733 1.13114 2.17843 2.52829 2.93634 3.33317 3.49972 3.55258 3.74142 3.86573 4.44283 4.51756 4.55438 4.67505 4.70163 4.74240 4.85877 4.89705 5.10515 5.15284 5.20586 5.31305 5.39013 5.41888 5.49139 5.49918 5.57117 5.58789 5.67152 5.70855 5.75310 5.80761 5.82456 5.96131 5.99739 6.07304 6.11058 6.14678 6.17064 6.26400 6.31969 6.39259 6.43181 6.59758 6.68241 6.85885 6.91304 7.36744 7.88309 7.90209 8.01099 8.82474 8.97435 9.47998 9.87782 10.89720 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.003553 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.309045 B = 7879.614095 C = 8212.540466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.102 3.898 3 N -0.297 5.297 4 N -0.332 5.332 5 C 0.170 3.830 6 C -0.115 4.115 7 C -0.100 4.100 8 C -0.131 4.131 9 C -0.099 4.099 10 C -0.137 4.137 11 C 0.098 3.902 12 C -0.095 4.095 13 C -0.190 4.190 14 C -0.058 4.058 15 C 0.449 3.551 16 O -0.530 6.530 17 N -0.439 5.439 18 C -0.349 4.349 19 H 0.095 0.905 20 C 0.090 3.910 21 N -0.869 5.869 22 Si 0.914 3.086 23 H -0.250 1.250 24 H -0.316 1.316 25 H -0.280 1.280 26 C 0.065 3.935 27 C -0.174 4.174 28 C -0.200 4.200 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.078 0.922 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.271 0.729 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.928 7.841 15.601 19.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.065 4.065 3 N -0.117 5.117 4 N -0.108 5.108 5 C 0.078 3.922 6 C -0.135 4.135 7 C -0.119 4.119 8 C -0.150 4.150 9 C -0.118 4.118 10 C -0.158 4.158 11 C -0.025 4.025 12 C -0.153 4.153 13 C -0.200 4.200 14 C -0.100 4.100 15 C 0.240 3.760 16 O -0.412 6.412 17 N -0.160 5.160 18 C -0.474 4.474 19 H 0.113 0.887 20 C -0.118 4.118 21 N -0.504 5.504 22 Si 0.746 3.254 23 H -0.176 1.176 24 H -0.247 1.247 25 H -0.206 1.206 26 C -0.041 4.041 27 C -0.211 4.211 28 C -0.239 4.239 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.091 0.909 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.150 0.850 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.080 0.920 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.144 9.553 14.925 19.502 hybrid contribution -0.676 -0.276 0.013 0.730 sum 7.469 9.277 14.938 19.104 Atomic orbital electron populations 1.20245 0.86789 1.03002 1.03419 1.22221 0.96779 0.90295 0.97247 1.77347 0.85191 1.22179 1.26977 1.45451 1.04027 1.03409 1.57947 1.17472 0.84834 0.91757 0.98124 1.21062 0.99709 0.93794 0.98975 1.21057 0.92511 0.99443 0.98881 1.21198 0.98395 0.97002 0.98377 1.20974 0.97611 0.94112 0.99108 1.21112 0.92822 1.01579 1.00266 1.20771 0.97068 0.83453 1.01197 1.20599 0.93074 0.98983 1.02613 1.19216 0.90945 0.95406 1.14446 1.19959 1.02071 0.91171 0.96757 1.20221 0.81957 0.83629 0.90236 1.90539 1.51645 1.53706 1.45287 1.43177 1.58283 1.09609 1.04948 1.18750 1.44744 1.02407 0.81511 0.88725 1.25293 0.94348 0.97828 0.94346 1.69743 1.41293 1.38836 1.00518 0.86343 0.76918 0.85170 0.76935 1.17573 1.24689 1.20604 1.21804 0.96384 0.93439 0.92479 1.23128 1.03116 0.91695 1.03180 1.23284 0.94003 1.05334 1.01249 0.90324 0.90271 0.90856 0.84989 0.85271 0.85597 0.85169 0.85008 0.90350 0.89021 0.90837 0.89532 0.89426 0.91953 0.87180 0.87180 0.89510 0.89548 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 10.26 36.01 0.37 -0.85 16 2 C 0.10 1.92 7.22 -82.37 -0.59 1.32 16 3 N -0.30 -5.69 12.34 33.69 0.42 -5.28 16 4 N -0.33 -5.86 3.74 -6.98 -0.03 -5.88 16 5 C 0.17 2.53 6.27 -83.60 -0.52 2.01 16 6 C -0.12 -1.59 9.76 -39.41 -0.38 -1.97 16 7 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 8 C -0.13 -1.19 10.04 -39.55 -0.40 -1.59 16 9 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 10 C -0.14 -1.61 8.28 -39.40 -0.33 -1.94 16 11 C 0.10 1.70 6.76 -82.14 -0.56 1.14 16 12 C -0.09 -1.28 8.21 36.00 0.30 -0.99 16 13 C -0.19 -3.54 4.59 -105.03 -0.48 -4.02 16 14 C -0.06 -1.03 4.23 -29.03 -0.12 -1.15 16 15 C 0.45 10.47 5.89 -10.99 -0.06 10.41 16 16 O -0.53 -14.72 10.98 5.55 0.06 -14.66 16 17 N -0.44 -10.28 2.55 -107.73 -0.27 -10.56 16 18 C -0.35 -9.68 8.76 -14.93 -0.13 -9.81 16 19 H 0.10 2.74 6.95 -52.49 -0.36 2.37 16 20 C 0.09 2.68 4.86 -17.47 -0.08 2.60 16 21 N -0.87 -26.90 13.96 55.50 0.77 -26.12 16 22 Si 0.91 24.84 24.64 -169.99 -4.19 20.65 16 23 H -0.25 -7.24 6.11 56.52 0.35 -6.89 16 24 H -0.32 -8.57 7.11 56.52 0.40 -8.17 16 25 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.06 1.17 5.85 -67.93 -0.40 0.77 16 27 C -0.17 -2.89 9.80 -26.69 -0.26 -3.15 16 28 C -0.20 -3.29 10.37 -26.69 -0.28 -3.57 16 29 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 30 H 0.08 1.13 7.25 -51.93 -0.38 0.75 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 33 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.13 1.37 6.12 -52.49 -0.32 1.04 16 37 H 0.08 0.80 7.74 -51.93 -0.40 0.39 16 38 H 0.09 1.35 7.79 -51.92 -0.40 0.94 16 39 H 0.07 0.94 6.90 -51.93 -0.36 0.58 16 40 H 0.09 1.27 7.22 -51.93 -0.37 0.89 16 41 H 0.09 1.39 7.22 -51.93 -0.37 1.02 16 42 H 0.27 7.98 8.31 -40.82 -0.34 7.64 16 43 H 0.11 1.60 6.99 -51.93 -0.36 1.24 16 44 H 0.11 2.13 6.48 -51.93 -0.34 1.79 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 381.69 15.07 5.75 5.75 Total: -1.00 -36.60 381.69 -8.89 -45.49 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -6.67 Total: 4.17 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -4.73 Total: -13.57 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.89 Total: -47.84 kcal Atomic # 8 Polarization: -14.72 SS G_CDS: 0.06 Total: -14.66 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -4.19 Total: 20.65 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.60 -8.89 -45.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058378456.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.665 kcal (2) G-P(sol) polarization free energy of solvation -36.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds