Wall clock time and date at job start Tue Mar 31 2020 04:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34484 * 125.36062 * 2 1 4 4 C 1.46724 * 106.50738 * 179.89759 * 3 2 1 5 5 C 1.46330 * 127.05177 * 180.14144 * 4 3 2 6 6 N 1.31023 * 119.99786 * 180.26400 * 5 4 3 7 7 N 1.40095 * 119.99783 * 179.97438 * 6 5 4 8 8 C 1.34783 * 119.99693 * 180.02562 * 7 6 5 9 9 O 1.22060 * 120.00280 * 0.02562 * 8 7 6 10 10 C 1.40092 * 119.99616 * 180.02562 * 8 7 6 11 11 H 1.07996 * 120.00392 * 0.02562 * 10 8 7 12 12 C 1.40114 * 119.99368 * 180.02562 * 10 8 7 13 13 N 1.30648 * 120.00573 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 119.99641 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47045 * 60.00254 * 14 12 10 16 16 H 1.48498 * 109.47171 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47322 * 299.99950 * 14 12 10 18 18 C 1.39191 * 105.89079 * 0.36588 * 4 3 2 19 19 C 1.50696 * 126.00476 * 179.78322 * 18 4 3 20 20 N 1.34837 * 107.99136 * 359.77631 * 18 4 3 21 21 C 1.40061 * 124.83132 * 179.97438 * 20 18 4 22 22 C 1.38897 * 120.07113 * 269.70083 * 21 20 18 23 23 C 1.38085 * 119.93000 * 179.75249 * 22 21 20 24 24 C 1.38318 * 120.07111 * 0.52638 * 23 22 21 25 25 C 1.50694 * 119.93417 * 179.76576 * 24 23 22 26 26 C 1.38275 * 120.13680 * 359.74961 * 24 23 22 27 27 C 1.38131 * 120.06828 * 359.97438 * 26 24 23 28 28 C 1.50707 * 120.03280 * 180.02562 * 27 26 24 29 29 H 1.09002 * 109.47152 * 269.69040 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69140 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69121 * 1 2 3 32 32 H 1.07998 * 126.74430 * 0.02588 * 3 2 1 33 33 H 1.07996 * 120.00313 * 0.27010 * 5 4 3 34 34 H 0.97002 * 120.00359 * 0.02562 * 7 6 5 35 35 H 0.97000 * 120.00640 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.47076 * 269.99315 * 19 18 4 37 37 H 1.09000 * 109.47171 * 29.99686 * 19 18 4 38 38 H 1.09003 * 109.47464 * 149.99501 * 19 18 4 39 39 H 1.08000 * 120.03722 * 0.02562 * 22 21 20 40 40 H 1.07997 * 119.96830 * 180.27918 * 23 22 21 41 41 H 1.08995 * 109.47402 * 269.98155 * 25 24 23 42 42 H 1.09000 * 109.46931 * 29.98078 * 25 24 23 43 43 H 1.09001 * 109.47293 * 149.98306 * 25 24 23 44 44 H 1.07995 * 119.96326 * 179.97438 * 26 24 23 45 45 H 1.09000 * 109.46765 * 269.97741 * 28 27 26 46 46 H 1.09002 * 109.46718 * 29.97634 * 28 27 26 47 47 H 1.09001 * 109.46819 * 149.97708 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0967 0.0000 4 6 3.6738 0.6226 0.0025 5 6 4.8856 1.4429 0.0063 6 7 6.0642 0.8705 0.0030 7 7 7.2243 1.6558 0.0061 8 6 8.4367 1.0669 0.0022 9 8 8.5238 -0.1506 -0.0046 10 6 9.5968 1.8522 0.0058 11 1 9.5197 2.9294 0.0122 12 6 10.8571 1.2400 0.0012 13 7 10.9504 -0.0631 -0.0060 14 14 12.4041 2.2871 0.0053 15 1 12.4228 3.1376 1.2224 16 1 13.5988 1.4052 -0.0001 17 1 12.4204 3.1509 -1.2025 18 6 3.6019 -0.7674 -0.0047 19 6 4.7736 -1.7151 -0.0099 20 7 2.2997 -1.1171 -0.0060 21 6 1.8252 -2.4348 -0.0132 22 6 1.5829 -3.0808 -1.2188 23 6 1.1200 -4.3817 -1.2225 24 6 0.8872 -5.0380 -0.0274 25 6 0.3771 -6.4559 -0.0351 26 6 1.1220 -4.3957 1.1744 27 6 1.5905 -3.0963 1.1848 28 6 1.8466 -2.3973 2.4952 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9535 2.1245 0.0004 33 1 4.8085 2.5201 0.0120 34 1 7.1551 2.6233 0.0111 35 1 11.8229 -0.4870 -0.0096 36 1 5.0557 -1.9383 -1.0388 37 1 5.6159 -1.2542 0.5060 38 1 4.4966 -2.6382 0.4992 39 1 1.7606 -2.5676 -2.1523 40 1 0.9358 -4.8860 -2.1596 41 1 -0.7129 -6.4499 -0.0339 42 1 0.7366 -6.9665 -0.9284 43 1 0.7384 -6.9769 0.8515 44 1 0.9389 -4.9106 2.1059 45 1 0.9417 -1.8800 2.8139 46 1 2.1302 -3.1316 3.2493 47 1 2.6532 -1.6750 2.3700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058927072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:31 Heat of formation + Delta-G solvation = 66.045037 kcal Electronic energy + Delta-G solvation = -28362.946071 eV Core-core repulsion = 24512.042227 eV Total energy + Delta-G solvation = -3850.903844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51755 -39.23736 -37.40753 -35.15559 -34.10265 -32.74430 -32.60504 -32.28765 -31.10539 -29.55251 -28.85040 -27.50890 -26.81735 -25.98823 -24.17903 -22.77473 -22.05705 -21.04902 -19.84428 -19.73473 -18.51990 -17.10369 -16.76022 -16.40458 -15.56872 -15.41567 -15.30324 -14.59393 -14.41013 -14.25664 -14.01296 -13.65741 -13.48942 -13.38689 -13.12639 -13.07502 -12.92014 -12.78033 -12.69234 -12.55565 -12.33920 -12.04126 -11.86606 -11.83445 -11.73425 -11.57851 -11.37232 -11.33827 -11.14167 -11.09975 -10.72148 -10.54272 -10.33963 -9.14037 -9.08909 -8.97480 -8.81463 -8.53151 -7.84546 -7.63134 -6.78017 -6.30744 -4.85973 0.86616 1.06107 2.09694 2.54509 2.98037 3.10817 3.15183 3.17435 3.31735 3.83686 3.91544 4.24588 4.46045 4.52526 4.54150 4.59262 4.80482 4.97696 4.99739 5.13085 5.24042 5.24968 5.33256 5.40243 5.42753 5.45479 5.47750 5.52521 5.61419 5.67488 5.76066 5.82669 5.90030 5.93101 5.96270 6.05120 6.13581 6.19936 6.24465 6.26222 6.28712 6.58656 6.61301 6.81382 6.98050 7.25465 7.28405 7.46794 7.71780 7.98981 8.11537 8.84526 8.94861 9.47697 10.47973 10.79639 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.002386 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.657345 B =11731.346855 C =12815.598164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.006 3.994 3 C -0.166 4.166 4 C -0.125 4.125 5 C 0.069 3.931 6 N -0.211 5.211 7 N -0.597 5.597 8 C 0.562 3.438 9 O -0.558 6.558 10 C -0.538 4.538 11 H 0.068 0.932 12 C 0.089 3.911 13 N -0.746 5.746 14 Si 0.915 3.085 15 H -0.266 1.266 16 H -0.278 1.278 17 H -0.266 1.266 18 C 0.076 3.924 19 C -0.085 4.085 20 N -0.399 5.399 21 C 0.109 3.891 22 C -0.096 4.096 23 C -0.120 4.120 24 C -0.074 4.074 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.063 4.063 28 C -0.119 4.119 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.101 0.899 34 H 0.365 0.635 35 H 0.273 0.727 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.050 0.950 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.128 0.872 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.810 -6.415 0.921 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.133 4.133 5 C -0.140 4.140 6 N -0.020 5.020 7 N -0.342 5.342 8 C 0.370 3.630 9 O -0.439 6.439 10 C -0.575 4.575 11 H 0.087 0.913 12 C -0.134 4.134 13 N -0.373 5.373 14 Si 0.739 3.261 15 H -0.191 1.191 16 H -0.203 1.203 17 H -0.190 1.190 18 C -0.039 4.039 19 C -0.143 4.143 20 N -0.075 5.075 21 C 0.020 3.980 22 C -0.115 4.115 23 C -0.138 4.138 24 C -0.074 4.074 25 C -0.172 4.172 26 C -0.135 4.135 27 C -0.064 4.064 28 C -0.175 4.175 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.119 0.881 34 H 0.200 0.800 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.147 0.853 40 H 0.146 0.854 41 H 0.090 0.910 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.146 0.854 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -23.032 -8.546 0.913 24.583 hybrid contribution 0.429 2.042 -0.104 2.089 sum -22.603 -6.504 0.809 23.534 Atomic orbital electron populations 1.20238 0.88644 1.02640 1.02073 1.20120 0.92949 0.84939 1.11951 1.21596 0.90864 0.96952 1.09776 1.18942 0.90908 0.89972 1.13479 1.23178 0.89700 0.95947 1.05206 1.74969 0.93763 1.25667 1.07603 1.47923 1.02909 1.06345 1.77067 1.16523 0.79585 0.88638 0.78204 1.90724 1.84858 1.14098 1.54180 1.19587 0.90101 0.94303 1.53533 0.91350 1.25736 1.00328 0.94893 0.92476 1.70035 1.25438 1.09739 1.32081 0.86314 0.80008 0.80138 0.79661 1.19051 1.20330 1.19047 1.21189 0.83371 0.94400 1.04941 1.20492 0.94721 0.95966 1.03107 1.40763 1.05278 1.02816 1.58664 1.17466 1.02739 0.84525 0.93230 1.21291 0.97975 0.94964 0.97224 1.20912 1.00834 0.94128 0.97960 1.20025 0.97866 0.96520 0.92974 1.20817 1.01188 0.92081 1.03131 1.20841 1.00907 0.93798 0.97943 1.20090 0.97209 0.94300 0.94763 1.20818 1.02791 1.00724 0.93214 0.91651 0.92286 0.90467 0.84077 0.88122 0.79996 0.91604 0.91182 0.87065 0.93121 0.85332 0.85363 0.90959 0.91269 0.91299 0.85367 0.90871 0.91116 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.03 36.01 0.36 -0.39 16 2 C 0.01 0.08 6.82 -81.62 -0.56 -0.47 16 3 C -0.17 -2.35 10.99 -37.48 -0.41 -2.77 16 4 C -0.12 -2.17 6.34 -102.86 -0.65 -2.83 16 5 C 0.07 1.32 11.05 -14.65 -0.16 1.16 16 6 N -0.21 -4.94 8.64 32.09 0.28 -4.67 16 7 N -0.60 -14.89 6.26 28.81 0.18 -14.71 16 8 C 0.56 16.75 7.63 -15.56 -0.12 16.63 16 9 O -0.56 -18.84 15.18 4.86 0.07 -18.77 16 10 C -0.54 -15.28 9.23 -38.18 -0.35 -15.63 16 11 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 12 C 0.09 2.46 5.50 -17.35 -0.10 2.37 16 13 N -0.75 -22.19 11.69 55.55 0.65 -21.54 16 14 Si 0.91 19.80 29.56 -169.99 -5.02 14.77 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 16 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 17 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 18 C 0.08 1.30 6.38 -80.92 -0.52 0.78 16 19 C -0.09 -1.58 9.49 36.00 0.34 -1.24 16 20 N -0.40 -5.72 1.83 -51.89 -0.10 -5.81 16 21 C 0.11 1.38 4.19 -83.62 -0.35 1.03 16 22 C -0.10 -1.08 9.97 -39.39 -0.39 -1.48 16 23 C -0.12 -1.12 9.69 -39.61 -0.38 -1.50 16 24 C -0.07 -0.65 5.88 -104.58 -0.62 -1.26 16 25 C -0.12 -0.69 10.01 36.00 0.36 -0.33 16 26 C -0.12 -1.10 9.35 -39.61 -0.37 -1.47 16 27 C -0.06 -0.71 5.90 -104.43 -0.62 -1.33 16 28 C -0.12 -1.28 9.77 36.01 0.35 -0.93 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.56 7.75 -51.93 -0.40 0.15 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.10 1.66 8.04 -52.49 -0.42 1.24 16 34 H 0.36 7.79 8.62 -182.60 -1.57 6.22 16 35 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.11 2.46 6.34 -51.93 -0.33 2.13 16 38 H 0.05 0.84 7.76 -51.93 -0.40 0.44 16 39 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 43 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 44 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.65 8.09 -51.93 -0.42 0.23 16 47 H 0.07 1.01 6.98 -51.93 -0.36 0.65 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -36.02 401.51 -10.17 -46.19 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -8.10 Total: 8.14 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -4.18 Total: -9.65 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: 1.01 Total: -46.74 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.07 Total: -18.77 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -36.02 -10.17 -46.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058927072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.240 kcal (2) G-P(sol) polarization free energy of solvation -36.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds