Wall clock time and date at job start Tue Mar 31 2020 04:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34484 * 125.36062 * 2 1 4 4 C 1.46724 * 106.50738 * 179.89759 * 3 2 1 5 5 C 1.46330 * 127.05177 * 180.14144 * 4 3 2 6 6 N 1.31023 * 119.99786 * 180.26400 * 5 4 3 7 7 N 1.40095 * 119.99783 * 179.97438 * 6 5 4 8 8 C 1.34783 * 119.99693 * 180.02562 * 7 6 5 9 9 O 1.22060 * 120.00280 * 0.02562 * 8 7 6 10 10 C 1.40092 * 119.99616 * 180.02562 * 8 7 6 11 11 H 1.07996 * 120.00392 * 0.02562 * 10 8 7 12 12 C 1.40114 * 119.99368 * 180.02562 * 10 8 7 13 13 N 1.30648 * 120.00573 * 359.97438 * 12 10 8 14 14 Si 1.86807 * 119.99641 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47045 * 60.00254 * 14 12 10 16 16 H 1.48498 * 109.47171 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47322 * 299.99950 * 14 12 10 18 18 C 1.39191 * 105.89079 * 0.36588 * 4 3 2 19 19 C 1.50696 * 126.00476 * 179.78322 * 18 4 3 20 20 N 1.34837 * 107.99136 * 359.77631 * 18 4 3 21 21 C 1.40061 * 124.83132 * 179.97438 * 20 18 4 22 22 C 1.38897 * 120.07113 * 269.70083 * 21 20 18 23 23 C 1.38085 * 119.93000 * 179.75249 * 22 21 20 24 24 C 1.38318 * 120.07111 * 0.52638 * 23 22 21 25 25 C 1.50694 * 119.93417 * 179.76576 * 24 23 22 26 26 C 1.38275 * 120.13680 * 359.74961 * 24 23 22 27 27 C 1.38131 * 120.06828 * 359.97438 * 26 24 23 28 28 C 1.50707 * 120.03280 * 180.02562 * 27 26 24 29 29 H 1.09002 * 109.47152 * 269.69040 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69140 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69121 * 1 2 3 32 32 H 1.07998 * 126.74430 * 0.02588 * 3 2 1 33 33 H 1.07996 * 120.00313 * 0.27010 * 5 4 3 34 34 H 0.97002 * 120.00359 * 0.02562 * 7 6 5 35 35 H 0.97000 * 120.00640 * 179.97438 * 13 12 10 36 36 H 1.08998 * 109.47076 * 269.99315 * 19 18 4 37 37 H 1.09000 * 109.47171 * 29.99686 * 19 18 4 38 38 H 1.09003 * 109.47464 * 149.99501 * 19 18 4 39 39 H 1.08000 * 120.03722 * 0.02562 * 22 21 20 40 40 H 1.07997 * 119.96830 * 180.27918 * 23 22 21 41 41 H 1.08995 * 109.47402 * 269.98155 * 25 24 23 42 42 H 1.09000 * 109.46931 * 29.98078 * 25 24 23 43 43 H 1.09001 * 109.47293 * 149.98306 * 25 24 23 44 44 H 1.07995 * 119.96326 * 179.97438 * 26 24 23 45 45 H 1.09000 * 109.46765 * 269.97741 * 28 27 26 46 46 H 1.09002 * 109.46718 * 29.97634 * 28 27 26 47 47 H 1.09001 * 109.46819 * 149.97708 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2853 1.0967 0.0000 4 6 3.6738 0.6226 0.0025 5 6 4.8856 1.4429 0.0063 6 7 6.0642 0.8705 0.0030 7 7 7.2243 1.6558 0.0061 8 6 8.4367 1.0669 0.0022 9 8 8.5238 -0.1506 -0.0046 10 6 9.5968 1.8522 0.0058 11 1 9.5197 2.9294 0.0122 12 6 10.8571 1.2400 0.0012 13 7 10.9504 -0.0631 -0.0060 14 14 12.4041 2.2871 0.0053 15 1 12.4228 3.1376 1.2224 16 1 13.5988 1.4052 -0.0001 17 1 12.4204 3.1509 -1.2025 18 6 3.6019 -0.7674 -0.0047 19 6 4.7736 -1.7151 -0.0099 20 7 2.2997 -1.1171 -0.0060 21 6 1.8252 -2.4348 -0.0132 22 6 1.5829 -3.0808 -1.2188 23 6 1.1200 -4.3817 -1.2225 24 6 0.8872 -5.0380 -0.0274 25 6 0.3771 -6.4559 -0.0351 26 6 1.1220 -4.3957 1.1744 27 6 1.5905 -3.0963 1.1848 28 6 1.8466 -2.3973 2.4952 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9535 2.1245 0.0004 33 1 4.8085 2.5201 0.0120 34 1 7.1551 2.6233 0.0111 35 1 11.8229 -0.4870 -0.0096 36 1 5.0557 -1.9383 -1.0388 37 1 5.6159 -1.2542 0.5060 38 1 4.4966 -2.6382 0.4992 39 1 1.7606 -2.5676 -2.1523 40 1 0.9358 -4.8860 -2.1596 41 1 -0.7129 -6.4499 -0.0339 42 1 0.7366 -6.9665 -0.9284 43 1 0.7384 -6.9769 0.8515 44 1 0.9389 -4.9106 2.1059 45 1 0.9417 -1.8800 2.8139 46 1 2.1302 -3.1316 3.2493 47 1 2.6532 -1.6750 2.3700 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058927072.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:30 Heat of formation + Delta-G solvation = 45.170309 kcal Electronic energy + Delta-G solvation = -28363.851267 eV Core-core repulsion = 24512.042227 eV Total energy + Delta-G solvation = -3851.809040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.61652 -40.11147 -39.46979 -36.93320 -35.07524 -34.65573 -33.76274 -33.54538 -32.42074 -30.97925 -30.04470 -28.70753 -28.25991 -27.01920 -25.51575 -23.83017 -23.21077 -22.17498 -21.66170 -20.86420 -19.99275 -18.86378 -18.07368 -17.56759 -17.29224 -17.05780 -16.12566 -15.91271 -15.45233 -15.35768 -15.20516 -14.97719 -14.66299 -14.57833 -14.27791 -14.23129 -14.19332 -13.97862 -13.86609 -13.49222 -13.36271 -13.25571 -13.15788 -13.09458 -12.97229 -12.78216 -12.68680 -12.58331 -12.51456 -12.47579 -12.25700 -12.05589 -11.98728 -10.97233 -10.74020 -10.12388 -9.91691 -9.88188 -9.61317 -9.13727 -8.41794 -8.39406 -7.06318 0.04500 0.27017 0.61075 1.38479 1.38669 1.45210 1.55599 1.88235 2.15361 2.29601 2.46219 2.53228 2.56195 3.71106 3.71875 3.75227 3.76529 3.89597 3.94811 4.06805 4.23106 4.25067 4.33601 4.48205 4.52863 4.60040 4.60747 4.62565 4.69506 4.70863 4.75435 4.80000 4.85472 4.92794 4.98380 5.05322 5.12458 5.14184 5.18962 5.21312 5.26745 5.42025 5.42402 5.46767 5.53864 5.83454 5.86776 5.99636 6.10528 6.22952 6.59135 6.70076 7.08981 7.55899 8.45120 8.66093 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016499 B = 0.002386 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.657345 B =11731.346855 C =12815.598164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.016 3.984 3 C -0.167 4.167 4 C -0.161 4.161 5 C 0.107 3.893 6 N -0.275 5.275 7 N -0.602 5.602 8 C 0.547 3.453 9 O -0.617 6.617 10 C -0.564 4.564 11 H 0.092 0.908 12 C 0.030 3.970 13 N -0.800 5.800 14 Si 1.009 2.991 15 H -0.251 1.251 16 H -0.270 1.270 17 H -0.251 1.251 18 C 0.064 3.936 19 C -0.071 4.071 20 N -0.390 5.390 21 C 0.078 3.922 22 C -0.108 4.108 23 C -0.120 4.120 24 C -0.069 4.069 25 C -0.115 4.115 26 C -0.117 4.117 27 C -0.074 4.074 28 C -0.115 4.115 29 H 0.079 0.921 30 H 0.061 0.939 31 H 0.099 0.901 32 H 0.171 0.829 33 H 0.131 0.869 34 H 0.379 0.621 35 H 0.280 0.720 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.123 0.877 40 H 0.151 0.849 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.151 0.849 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.318 -5.918 1.088 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.091 4.091 3 C -0.192 4.192 4 C -0.170 4.170 5 C -0.101 4.101 6 N -0.082 5.082 7 N -0.347 5.347 8 C 0.356 3.644 9 O -0.503 6.503 10 C -0.600 4.600 11 H 0.110 0.890 12 C -0.189 4.189 13 N -0.428 5.428 14 Si 0.827 3.173 15 H -0.175 1.175 16 H -0.195 1.195 17 H -0.175 1.175 18 C -0.053 4.053 19 C -0.129 4.129 20 N -0.064 5.064 21 C -0.010 4.010 22 C -0.127 4.127 23 C -0.138 4.138 24 C -0.069 4.069 25 C -0.171 4.171 26 C -0.136 4.136 27 C -0.075 4.075 28 C -0.171 4.171 29 H 0.098 0.902 30 H 0.080 0.920 31 H 0.118 0.882 32 H 0.188 0.812 33 H 0.148 0.852 34 H 0.216 0.784 35 H 0.091 0.909 36 H 0.074 0.926 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.141 0.859 40 H 0.169 0.831 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.169 0.831 45 H 0.105 0.895 46 H 0.103 0.897 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -25.616 -8.013 1.079 26.862 hybrid contribution 0.840 1.763 -0.153 1.959 sum -24.777 -6.250 0.926 25.570 Atomic orbital electron populations 1.20358 0.85552 1.03888 1.03377 1.20822 0.94760 0.84144 1.09383 1.21893 0.88866 0.98729 1.09690 1.19217 0.91805 0.90302 1.15653 1.23805 0.89130 0.97795 0.99403 1.75125 0.94300 1.26132 1.12673 1.47277 1.02788 1.06873 1.77714 1.16952 0.81385 0.88212 0.77816 1.90661 1.86246 1.16320 1.57056 1.20142 0.90607 0.95494 1.53791 0.88996 1.27130 1.04564 0.96316 0.90851 1.70208 1.27022 1.12556 1.33048 0.84917 0.73983 0.77881 0.80557 1.17500 1.19458 1.17515 1.20992 0.84361 0.94275 1.05655 1.20180 0.94397 0.96590 1.01727 1.40853 1.04246 1.04198 1.57120 1.17718 1.04802 0.84119 0.94394 1.21357 0.98784 0.95975 0.96553 1.21206 0.99905 0.93292 0.99402 1.20413 0.96346 0.97766 0.92382 1.20892 1.02103 0.90064 1.04036 1.21138 1.00073 0.92988 0.99355 1.20217 0.97804 0.95180 0.94268 1.20780 1.02208 1.00472 0.93678 0.90186 0.91988 0.88243 0.81203 0.85191 0.78378 0.90944 0.92557 0.90961 0.92027 0.85919 0.83130 0.89375 0.90439 0.90412 0.83093 0.89530 0.89692 0.93829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.20 10.03 71.24 0.71 -0.49 16 2 C 0.02 0.39 6.82 40.90 0.28 0.66 16 3 C -0.17 -4.48 10.99 23.63 0.26 -4.22 16 4 C -0.16 -5.68 6.34 -18.73 -0.12 -5.80 16 5 C 0.11 4.21 11.05 86.92 0.96 5.17 16 6 N -0.27 -13.66 8.64 -52.40 -0.45 -14.11 16 7 N -0.60 -31.63 6.26 -180.83 -1.13 -32.76 16 8 C 0.55 34.50 7.63 84.69 0.65 35.15 16 9 O -0.62 -44.72 15.18 -5.51 -0.08 -44.81 16 10 C -0.56 -33.03 9.23 23.18 0.21 -32.81 16 11 H 0.09 4.73 7.85 -2.91 -0.02 4.71 16 12 C 0.03 1.69 5.50 85.32 0.47 2.16 16 13 N -0.80 -49.78 11.69 21.85 0.26 -49.52 16 14 Si 1.01 40.80 29.56 68.60 2.03 42.83 16 15 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 16 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 17 H -0.25 -9.51 7.11 99.48 0.71 -8.81 16 18 C 0.06 2.28 6.38 42.33 0.27 2.55 16 19 C -0.07 -2.87 9.49 71.23 0.68 -2.20 16 20 N -0.39 -11.16 1.83 -318.07 -0.58 -11.74 16 21 C 0.08 1.94 4.19 38.13 0.16 2.10 16 22 C -0.11 -2.38 9.97 22.39 0.22 -2.16 16 23 C -0.12 -2.01 9.69 22.25 0.22 -1.80 16 24 C -0.07 -1.03 5.88 -19.84 -0.12 -1.15 16 25 C -0.11 -0.99 10.01 71.23 0.71 -0.27 16 26 C -0.12 -1.96 9.35 22.25 0.21 -1.75 16 27 C -0.07 -1.60 5.90 -19.74 -0.12 -1.71 16 28 C -0.11 -2.40 9.77 71.24 0.70 -1.71 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.06 1.00 7.75 -2.39 -0.02 0.98 16 31 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.17 3.46 8.06 -2.91 -0.02 3.43 16 33 H 0.13 4.19 8.04 -2.91 -0.02 4.16 16 34 H 0.38 16.78 8.62 -213.32 -1.84 14.94 16 35 H 0.28 15.60 8.29 -92.71 -0.77 14.83 16 36 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.07 3.54 6.34 -2.39 -0.02 3.52 16 38 H 0.06 2.23 7.76 -2.39 -0.02 2.21 16 39 H 0.12 2.76 8.06 -2.91 -0.02 2.73 16 40 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 41 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 43 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 44 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 45 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 1.48 8.09 -2.39 -0.02 1.46 16 47 H 0.04 1.19 6.98 -2.39 -0.02 1.17 16 Total: -1.00 -85.85 401.51 5.54 -80.32 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: -0.85 Total: 38.07 kcal Atomic # 6 Polarization: -14.63 SS G_CDS: 6.35 Total: -8.27 kcal Atomic # 7 Polarization: -106.22 SS G_CDS: -1.91 Total: -108.13 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.08 Total: -44.81 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -85.85 5.54 -80.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058927072.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.488 kcal (2) G-P(sol) polarization free energy of solvation -85.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds