Wall clock time and date at job start Tue Mar 31 2020 04:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.46914 * 2 1 4 4 C 1.38120 * 120.03993 * 266.94102 * 3 2 1 5 5 C 1.38266 * 120.07259 * 180.27951 * 4 3 2 6 6 C 1.38313 * 120.13919 * 359.75054 * 5 4 3 7 7 C 1.38082 * 120.07020 * 359.97438 * 6 5 4 8 8 C 1.38855 * 120.03247 * 86.69715 * 3 2 1 9 9 N 1.40063 * 120.07075 * 359.97438 * 8 3 2 10 10 C 1.36983 * 124.83621 * 83.53309 * 9 8 3 11 11 C 1.50702 * 125.35699 * 0.02562 * 10 9 8 12 12 C 1.34480 * 109.28190 * 180.02562 * 10 9 8 13 13 C 1.46732 * 106.50968 * 359.97438 * 12 10 9 14 14 C 1.46320 * 127.05509 * 180.02562 * 13 12 10 15 15 N 1.31024 * 119.99960 * 179.97438 * 14 13 12 16 16 N 1.40096 * 120.00292 * 179.97438 * 15 14 13 17 17 C 1.34772 * 120.00291 * 179.97438 * 16 15 14 18 18 O 1.22068 * 119.99920 * 0.02562 * 17 16 15 19 19 C 1.40091 * 119.99950 * 180.02562 * 17 16 15 20 20 H 1.07995 * 119.99995 * 359.97438 * 19 17 16 21 21 C 1.40122 * 119.99754 * 180.02562 * 19 17 16 22 22 N 1.30655 * 119.99850 * 359.97438 * 21 19 17 23 23 Si 1.86802 * 119.99831 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47235 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46649 * 119.99917 * 23 21 19 26 26 H 1.48491 * 109.46933 * 239.99615 * 23 21 19 27 27 C 1.34828 * 124.83940 * 263.23089 * 9 8 3 28 28 C 1.50704 * 125.99943 * 359.97438 * 27 9 8 29 29 H 1.09005 * 109.47319 * 304.07971 * 1 2 3 30 30 H 1.09008 * 109.47167 * 64.07515 * 1 2 3 31 31 H 1.08998 * 109.47247 * 184.07390 * 1 2 3 32 32 H 1.09000 * 109.46905 * 240.00264 * 2 1 3 33 33 H 1.08996 * 109.46909 * 119.99933 * 2 1 3 34 34 H 1.08001 * 119.96295 * 0.02562 * 4 3 2 35 35 H 1.07999 * 119.93076 * 179.77037 * 5 4 3 36 36 H 1.08003 * 119.96554 * 179.97438 * 6 5 4 37 37 H 1.08001 * 120.03447 * 180.02562 * 7 6 5 38 38 H 1.09006 * 109.46795 * 94.86767 * 11 10 9 39 39 H 1.08999 * 109.46873 * 214.86528 * 11 10 9 40 40 H 1.08997 * 109.47416 * 334.86880 * 11 10 9 41 41 H 1.08000 * 126.74736 * 179.97438 * 12 10 9 42 42 H 1.08004 * 120.00234 * 359.96772 * 14 13 12 43 43 H 0.97005 * 119.99442 * 359.97438 * 16 15 14 44 44 H 0.97003 * 119.99577 * 180.02562 * 22 21 19 45 45 H 1.09006 * 109.46757 * 95.84158 * 28 27 9 46 46 H 1.09002 * 109.47321 * 215.84063 * 28 27 9 47 47 H 1.08997 * 109.47167 * 335.84801 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3229 2.0515 -1.1940 5 6 2.7893 3.3531 -1.1945 6 6 2.9614 4.0296 -0.0004 7 6 2.6673 3.4067 1.1963 8 6 2.1986 2.0992 1.2001 9 7 1.8995 1.4644 2.4123 10 6 2.7506 0.6330 3.0911 11 6 4.1439 0.2635 2.6515 12 6 2.1471 0.1984 4.2116 13 6 0.8133 0.8097 4.2308 14 6 -0.2199 0.6397 5.2528 15 7 -1.3697 1.2559 5.1308 16 7 -2.3592 1.0927 6.1091 17 6 -3.5418 1.7270 5.9839 18 8 -3.7509 2.4433 5.0178 19 6 -4.5310 1.5641 6.9624 20 1 -4.3461 0.9301 7.8168 21 6 -5.7607 2.2232 6.8319 22 7 -5.9844 2.9899 5.7979 23 14 -7.0800 2.0055 8.1363 24 1 -6.5820 1.0929 9.1966 25 1 -7.4088 3.3252 8.7326 26 1 -8.2981 1.4252 7.5162 27 6 0.7350 1.5893 3.0803 28 6 -0.4456 2.4235 2.6542 29 1 -0.3634 0.5759 0.8512 30 1 -0.3634 0.4493 -0.9243 31 1 -0.3633 -1.0250 0.0730 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.1896 1.5259 -2.1280 35 1 3.0193 3.8428 -2.1292 36 1 3.3263 5.0461 -0.0040 37 1 2.8016 3.9356 2.1284 38 1 4.8639 0.9275 3.1299 39 1 4.3539 -0.7670 2.9379 40 1 4.2216 0.3628 1.5688 41 1 2.5625 -0.4694 4.9518 42 1 -0.0348 0.0061 6.1077 43 1 -2.1932 0.5232 6.8766 44 1 -6.8355 3.4464 5.7077 45 1 -1.1620 1.7954 2.1245 46 1 -0.9221 2.8553 3.5344 47 1 -0.1067 3.2230 1.9954 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059140818.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:54:05 Heat of formation + Delta-G solvation = 67.779912 kcal Electronic energy + Delta-G solvation = -28828.616711 eV Core-core repulsion = 24977.788097 eV Total energy + Delta-G solvation = -3850.828614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.57826 -39.06948 -37.40574 -35.09991 -34.35939 -32.99346 -32.65956 -32.27487 -30.40646 -29.85371 -28.87459 -28.34300 -26.55841 -24.22226 -24.13942 -23.26716 -21.82061 -21.15123 -19.86033 -19.81400 -18.50484 -17.12789 -16.82431 -16.34107 -16.07867 -15.52536 -15.42587 -14.69407 -14.19638 -14.18056 -14.02838 -13.82545 -13.72469 -13.26213 -13.13134 -13.09964 -12.85878 -12.79185 -12.57741 -12.43348 -12.08328 -12.02350 -11.92398 -11.82590 -11.43052 -11.36678 -11.30014 -11.12300 -11.05342 -10.93022 -10.72077 -10.56031 -10.27611 -9.20834 -9.14505 -9.01068 -8.96087 -8.52388 -7.85064 -7.63062 -6.78301 -6.31586 -4.86268 0.88666 1.04960 2.09774 2.53481 2.96207 3.07372 3.15225 3.20227 3.36634 3.83211 3.91269 4.24278 4.47029 4.53503 4.54281 4.72829 4.79026 4.94183 5.10496 5.15142 5.24785 5.26349 5.29311 5.37462 5.43152 5.50494 5.54964 5.72307 5.74321 5.79349 5.82349 5.87182 5.89657 5.93412 6.08145 6.12694 6.13324 6.16837 6.23088 6.29253 6.32791 6.56470 6.61775 6.79878 6.95631 7.24621 7.28217 7.45415 7.70216 7.99064 8.11396 8.84385 8.94656 9.47340 10.47218 10.79293 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.002534 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.965370 B =11047.577227 C =11724.621398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.087 4.087 3 C -0.064 4.064 4 C -0.114 4.114 5 C -0.108 4.108 6 C -0.118 4.118 7 C -0.102 4.102 8 C 0.118 3.882 9 N -0.399 5.399 10 C 0.005 3.995 11 C -0.080 4.080 12 C -0.165 4.165 13 C -0.124 4.124 14 C 0.068 3.932 15 N -0.210 5.210 16 N -0.597 5.597 17 C 0.562 3.438 18 O -0.558 6.558 19 C -0.538 4.538 20 H 0.069 0.931 21 C 0.089 3.911 22 N -0.745 5.745 23 Si 0.914 3.086 24 H -0.262 1.262 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.078 3.922 28 C -0.082 4.082 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.059 0.941 41 H 0.141 0.859 42 H 0.101 0.899 43 H 0.365 0.635 44 H 0.272 0.728 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.258 -3.816 -11.688 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.124 4.124 3 C -0.065 4.065 4 C -0.132 4.132 5 C -0.126 4.126 6 C -0.136 4.136 7 C -0.121 4.121 8 C 0.029 3.971 9 N -0.075 5.075 10 C -0.101 4.101 11 C -0.137 4.137 12 C -0.191 4.191 13 C -0.133 4.133 14 C -0.141 4.141 15 N -0.019 5.019 16 N -0.342 5.342 17 C 0.370 3.630 18 O -0.439 6.439 19 C -0.575 4.575 20 H 0.087 0.913 21 C -0.134 4.134 22 N -0.373 5.373 23 Si 0.738 3.262 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.037 4.037 28 C -0.140 4.140 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.159 0.841 42 H 0.118 0.882 43 H 0.200 0.800 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.124 0.876 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 19.317 -2.422 -13.191 23.517 hybrid contribution -0.158 -0.944 1.749 1.993 sum 19.160 -3.366 -11.443 22.569 Atomic orbital electron populations 1.21815 0.93869 1.02489 1.02685 1.20564 0.97019 0.91784 1.03040 1.20121 0.97563 0.96992 0.91845 1.20973 0.99969 0.95162 0.97119 1.21252 0.98471 0.94585 0.98279 1.21050 1.00626 1.00174 0.91794 1.21338 0.97903 0.93613 0.99232 1.17489 1.02646 0.92487 0.84469 1.40758 1.12722 1.37647 1.16323 1.20102 0.94083 1.00390 0.95496 1.20264 0.90651 1.01840 1.00993 1.21591 0.93901 1.05228 0.98385 1.18928 0.94077 1.04702 0.95556 1.23176 0.91827 1.01232 0.97883 1.74996 0.97885 1.15326 1.13717 1.47921 1.13980 1.51055 1.21274 1.16535 0.78440 0.80144 0.87845 1.90726 1.78458 1.40845 1.33824 1.19655 0.98848 1.30608 1.08360 0.91276 1.25744 0.98848 0.93188 0.95666 1.70063 1.22526 1.19504 1.25168 0.86209 0.80213 0.78876 0.80884 1.18567 1.19913 1.19921 1.21138 0.87591 1.01740 0.93213 1.20477 0.92896 0.97205 1.03384 0.91465 0.92711 0.92121 0.91026 0.90413 0.85392 0.85546 0.85324 0.85333 0.91497 0.90517 0.92242 0.84092 0.88167 0.80005 0.91729 0.90787 0.87635 0.93175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.89 37.16 0.37 -1.43 16 2 C -0.09 -0.92 5.78 -27.88 -0.16 -1.08 16 3 C -0.06 -0.70 5.13 -104.44 -0.54 -1.24 16 4 C -0.11 -1.02 9.68 -39.61 -0.38 -1.40 16 5 C -0.11 -0.88 10.04 -39.54 -0.40 -1.28 16 6 C -0.12 -1.05 10.04 -39.61 -0.40 -1.45 16 7 C -0.10 -1.13 9.94 -39.39 -0.39 -1.53 16 8 C 0.12 1.45 4.03 -83.62 -0.34 1.12 16 9 N -0.40 -5.55 1.99 -51.88 -0.10 -5.65 16 10 C 0.01 0.07 5.87 -81.62 -0.48 -0.41 16 11 C -0.08 -0.75 10.09 36.01 0.36 -0.39 16 12 C -0.16 -2.30 10.99 -37.48 -0.41 -2.72 16 13 C -0.12 -2.13 6.34 -102.86 -0.65 -2.79 16 14 C 0.07 1.29 11.05 -14.65 -0.16 1.13 16 15 N -0.21 -4.88 8.79 32.08 0.28 -4.60 16 16 N -0.60 -14.81 6.26 28.81 0.18 -14.63 16 17 C 0.56 16.67 7.63 -15.57 -0.12 16.55 16 18 O -0.56 -18.76 15.18 4.86 0.07 -18.69 16 19 C -0.54 -15.22 9.23 -38.18 -0.35 -15.57 16 20 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 21 C 0.09 2.45 5.50 -17.35 -0.10 2.35 16 22 N -0.75 -22.11 11.69 55.55 0.65 -21.46 16 23 Si 0.91 19.75 29.56 -169.99 -5.02 14.73 16 24 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 27 C 0.08 1.31 6.28 -80.92 -0.51 0.80 16 28 C -0.08 -1.49 8.88 36.01 0.32 -1.17 16 29 H 0.07 0.97 5.34 -51.93 -0.28 0.69 16 30 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 33 H 0.08 0.91 6.77 -51.93 -0.35 0.56 16 34 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 37 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.55 7.60 -51.93 -0.39 0.15 16 41 H 0.14 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.10 1.64 8.04 -52.48 -0.42 1.22 16 43 H 0.36 7.76 8.62 -182.60 -1.57 6.19 16 44 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 45 H 0.07 1.39 6.74 -51.93 -0.35 1.04 16 46 H 0.11 2.28 6.70 -51.93 -0.35 1.93 16 47 H 0.05 0.81 7.59 -51.93 -0.39 0.41 16 LS Contribution 395.63 15.07 5.96 5.96 Total: -1.00 -35.69 395.63 -10.19 -45.88 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -7.88 Total: 8.96 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -4.33 Total: -10.50 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 1.01 Total: -46.34 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.07 Total: -18.69 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.73 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.69 -10.19 -45.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059140818.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.659 kcal (2) G-P(sol) polarization free energy of solvation -35.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds