Wall clock time and date at job start Tue Mar 31 2020 05:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86803 * 120.00431 * 2 1 4 4 H 1.48501 * 109.47235 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46717 * 300.00566 * 3 2 1 6 6 H 1.48493 * 109.46984 * 60.00096 * 3 2 1 7 7 C 1.38649 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00177 * 179.97438 * 7 2 1 9 9 O 1.34805 * 119.99524 * 0.27302 * 7 2 1 10 10 C 1.35610 * 116.99637 * 174.64983 * 9 7 2 11 11 C 1.38721 * 120.16113 * 5.57344 * 10 9 7 12 12 C 1.38116 * 120.08572 * 179.70244 * 11 10 9 13 13 C 1.38533 * 120.40163 * 0.59533 * 12 11 10 14 14 C 1.37881 * 120.31705 * 359.68355 * 13 12 11 15 15 C 1.39681 * 119.90840 * 0.02562 * 14 13 12 16 16 C 1.47305 * 120.19603 * 180.02562 * 15 14 13 17 17 N 1.29851 * 119.99831 * 179.97438 * 16 15 14 18 18 N 1.40097 * 120.00162 * 180.02562 * 17 16 15 19 19 C 1.34778 * 120.00341 * 179.97438 * 18 17 16 20 20 O 1.21311 * 119.99751 * 359.97438 * 19 18 17 21 21 C 1.50693 * 120.00059 * 179.97438 * 19 18 17 22 22 H 1.09000 * 109.47413 * 55.00037 * 21 19 18 23 23 O 1.42908 * 109.47115 * 174.99656 * 21 19 18 24 24 C 1.50691 * 109.47352 * 294.99689 * 21 19 18 25 25 C 1.38234 * 120.00223 * 279.72909 * 24 21 19 26 26 C 1.38233 * 120.00386 * 179.81012 * 25 24 21 27 27 C 1.38237 * 119.99982 * 0.39288 * 26 25 24 28 28 C 1.38239 * 119.99426 * 359.86114 * 27 26 25 29 29 C 1.38230 * 120.00507 * 359.95599 * 28 27 26 30 30 H 0.96999 * 119.99747 * 359.97438 * 1 2 3 31 31 H 1.07996 * 119.95506 * 0.02562 * 11 10 9 32 32 H 1.07993 * 119.80268 * 180.29837 * 12 11 10 33 33 H 1.08003 * 119.83790 * 179.69792 * 13 12 11 34 34 H 1.08005 * 120.04611 * 179.97438 * 14 13 12 35 35 H 1.07993 * 120.00400 * 359.97438 * 16 15 14 36 36 H 0.97006 * 119.99846 * 359.97438 * 18 17 16 37 37 H 0.96699 * 113.99807 * 59.99480 * 23 21 19 38 38 H 1.08007 * 120.00010 * 359.97438 * 25 24 21 39 39 H 1.08004 * 120.00490 * 180.23325 * 26 25 24 40 40 H 1.08000 * 120.00247 * 179.83574 * 27 26 25 41 41 H 1.08008 * 119.99558 * 179.97438 * 28 27 26 42 42 H 1.07996 * 120.00316 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8908 2.3964 -1.2125 6 1 1.8910 2.3963 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0887 -1.2008 -0.0010 9 8 1.3347 -2.3681 -0.0066 10 6 2.0691 -3.5025 -0.1195 11 6 3.4549 -3.4398 -0.1060 12 6 4.2013 -4.5968 -0.2149 13 6 3.5751 -5.8250 -0.3505 14 6 2.1988 -5.9060 -0.3716 15 6 1.4310 -4.7448 -0.2564 16 6 -0.0398 -4.8240 -0.2776 17 7 -0.7498 -3.7422 -0.1698 18 7 -2.1486 -3.8175 -0.1894 19 6 -2.8857 -2.6947 -0.0769 20 8 -2.3378 -1.6189 0.0418 21 6 -4.3903 -2.7758 -0.0987 22 1 -4.7280 -3.4692 0.6715 23 8 -4.9407 -1.4809 0.1518 24 6 -4.8477 -3.2633 -1.4492 25 6 -4.9194 -2.3841 -2.5135 26 6 -5.3352 -2.8322 -3.7533 27 6 -5.6871 -4.1577 -3.9269 28 6 -5.6204 -5.0357 -2.8613 29 6 -5.2009 -4.5885 -1.6224 30 1 -0.4850 0.8401 0.0004 31 1 3.9505 -2.4857 -0.0051 32 1 5.2798 -4.5432 -0.1991 33 1 4.1678 -6.7235 -0.4398 34 1 1.7151 -6.8658 -0.4779 35 1 -0.5276 -5.7818 -0.3829 36 1 -2.5868 -4.6778 -0.2840 37 1 -4.6815 -0.8114 -0.4959 38 1 -4.6480 -1.3477 -2.3770 39 1 -5.3877 -2.1461 -4.5859 40 1 -6.0145 -4.5072 -4.8949 41 1 -5.8957 -6.0713 -2.9968 42 1 -5.1484 -5.2745 -0.7900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059165644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:08 Heat of formation + Delta-G solvation = 4.317472 kcal Electronic energy + Delta-G solvation = -28715.623112 eV Core-core repulsion = 24628.490803 eV Total energy + Delta-G solvation = -4087.132308 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.14068 -38.97200 -38.46414 -36.52138 -36.20860 -35.28976 -32.56180 -32.12000 -31.43152 -31.01467 -29.53191 -28.55252 -26.69771 -25.24386 -23.16423 -22.76981 -21.89271 -21.47758 -20.19132 -19.88489 -17.99483 -17.83084 -17.49721 -16.64261 -16.32866 -15.90960 -15.68874 -14.86744 -14.71244 -14.40856 -14.34287 -14.06523 -13.83050 -13.64819 -13.56331 -13.42558 -13.32432 -12.86487 -12.61527 -12.38080 -12.13925 -11.78220 -11.57190 -11.55357 -11.22444 -11.10515 -10.80312 -10.77098 -10.68419 -10.63521 -10.34801 -9.49860 -9.39997 -9.08448 -9.02230 -8.88851 -8.67429 -8.64096 -7.67362 -6.92778 -6.17871 -3.81926 1.11176 1.23809 1.70780 2.47570 2.92763 3.05989 3.20793 3.21800 3.26570 3.53710 3.63676 4.06609 4.43462 4.50212 4.65509 4.73443 4.80324 4.93218 4.96649 5.15523 5.21868 5.29758 5.31965 5.38046 5.49472 5.58667 5.72261 5.74726 5.85203 5.91265 6.11326 6.25668 6.28744 6.33713 6.36306 6.53084 6.76657 6.79783 6.89613 7.16876 7.27040 7.42850 7.45448 7.46339 7.75426 7.87440 8.10094 8.32326 9.11026 9.17338 9.84741 10.87335 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009608 B = 0.003925 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.499427 B = 7132.616416 C = 9189.571350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.045 3.955 3 Si 0.928 3.072 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.408 4.408 8 H 0.089 0.911 9 O -0.115 6.115 10 C 0.165 3.835 11 C -0.237 4.237 12 C -0.061 4.061 13 C -0.230 4.230 14 C -0.043 4.043 15 C -0.147 4.147 16 C 0.096 3.904 17 N -0.181 5.181 18 N -0.589 5.589 19 C 0.479 3.521 20 O -0.424 6.424 21 C 0.140 3.860 22 H 0.127 0.873 23 O -0.530 6.530 24 C -0.113 4.113 25 C -0.101 4.101 26 C -0.114 4.114 27 C -0.119 4.119 28 C -0.119 4.119 29 C -0.111 4.111 30 H 0.267 0.733 31 H 0.127 0.873 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.365 0.635 37 H 0.385 0.615 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.507 -10.434 -4.994 14.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.166 4.166 3 Si 0.753 3.247 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.484 4.484 8 H 0.107 0.893 9 O -0.011 6.011 10 C 0.104 3.896 11 C -0.257 4.257 12 C -0.081 4.081 13 C -0.249 4.249 14 C -0.064 4.064 15 C -0.152 4.152 16 C -0.113 4.113 17 N 0.012 4.988 18 N -0.333 5.333 19 C 0.261 3.739 20 O -0.289 6.289 21 C 0.076 3.924 22 H 0.144 0.856 23 O -0.335 6.335 24 C -0.114 4.114 25 C -0.119 4.119 26 C -0.132 4.132 27 C -0.137 4.137 28 C -0.137 4.137 29 C -0.129 4.129 30 H 0.077 0.923 31 H 0.145 0.855 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.201 0.799 37 H 0.235 0.765 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -10.074 -8.573 -4.255 13.895 hybrid contribution 0.490 -0.399 -0.685 0.932 sum -9.584 -8.972 -4.940 14.027 Atomic orbital electron populations 1.70286 1.04751 1.26872 1.39769 1.25353 0.95891 0.98376 0.96981 0.85861 0.79317 0.81412 0.78080 1.19276 1.20368 1.20305 1.21395 0.91649 0.81233 1.54166 0.89347 1.84177 1.33167 1.10792 1.72969 1.19440 0.89938 0.87870 0.92338 1.21120 0.93691 0.99041 1.11799 1.20834 0.98398 0.92443 0.96408 1.20388 0.94017 0.96952 1.13557 1.20627 0.93495 0.95452 0.96847 1.17329 0.88966 0.91678 1.17196 1.24229 0.94022 0.93482 0.99559 1.75902 0.87220 1.24031 1.11616 1.47127 1.03360 1.08914 1.73944 1.21087 0.88639 0.84869 0.79352 1.91109 1.70857 1.26001 1.40886 1.20641 0.89846 0.87334 0.94619 0.85579 1.86592 1.72244 1.18377 1.56297 1.20314 1.00722 0.94789 0.95556 1.20971 0.98467 0.99883 0.92602 1.21142 0.98943 0.96071 0.97065 1.21197 0.99856 0.93702 0.98922 1.21111 0.99962 0.99705 0.92874 1.20965 0.99410 0.94649 0.97875 0.92286 0.85513 0.87635 0.87583 0.86958 0.88418 0.79883 0.76517 0.85774 0.85771 0.86000 0.85824 0.85736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -23.40 12.58 55.48 0.70 -22.70 16 2 C 0.04 1.25 5.49 -17.52 -0.10 1.16 16 3 Si 0.93 21.04 29.55 -169.99 -5.02 16.02 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.41 -11.59 9.49 30.88 0.29 -11.29 16 8 H 0.09 2.34 5.21 -52.49 -0.27 2.07 16 9 O -0.11 -3.28 7.64 0.55 0.00 -3.27 16 10 C 0.16 4.03 6.66 -38.62 -0.26 3.78 16 11 C -0.24 -5.22 9.16 -39.45 -0.36 -5.58 16 12 C -0.06 -1.13 10.03 -39.52 -0.40 -1.52 16 13 C -0.23 -3.88 10.03 -39.60 -0.40 -4.28 16 14 C -0.04 -0.75 9.79 -39.17 -0.38 -1.13 16 15 C -0.15 -3.09 5.88 -104.88 -0.62 -3.71 16 16 C 0.10 1.88 10.75 -14.70 -0.16 1.72 16 17 N -0.18 -4.14 8.90 32.13 0.29 -3.85 16 18 N -0.59 -10.89 6.22 31.22 0.19 -10.69 16 19 C 0.48 9.27 7.26 -10.99 -0.08 9.19 16 20 O -0.42 -10.63 15.57 -14.33 -0.22 -10.86 16 21 C 0.14 2.00 3.62 -29.04 -0.11 1.89 16 22 H 0.13 1.47 8.00 -51.93 -0.42 1.06 16 23 O -0.53 -8.09 12.84 -55.09 -0.71 -8.79 16 24 C -0.11 -1.42 4.92 -104.63 -0.51 -1.93 16 25 C -0.10 -1.28 9.32 -39.58 -0.37 -1.65 16 26 C -0.11 -1.26 10.05 -39.58 -0.40 -1.65 16 27 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 28 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 29 C -0.11 -1.15 9.67 -39.58 -0.38 -1.53 16 30 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.13 2.81 5.64 -52.49 -0.30 2.51 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 34 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 35 H 0.10 1.45 8.02 -52.49 -0.42 1.03 16 36 H 0.36 5.07 8.65 -182.59 -1.58 3.49 16 37 H 0.38 5.32 7.24 45.56 0.33 5.65 16 38 H 0.12 1.53 6.78 -52.48 -0.36 1.18 16 39 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 40 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 LS Contribution 371.06 15.07 5.59 5.59 Total: -1.00 -36.31 371.06 -9.30 -45.61 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.11 Total: 12.58 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -5.02 Total: -19.63 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 1.18 Total: -37.25 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.93 Total: -22.92 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -36.31 -9.30 -45.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059165644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.928 kcal (2) G-P(sol) polarization free energy of solvation -36.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds