Wall clock time and date at job start Tue Mar 31 2020 06:03:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36936 * 120.00078 * 2 1 4 4 H 1.07994 * 120.00010 * 196.64637 * 3 2 1 5 5 C 1.38818 * 120.00264 * 16.64094 * 3 2 1 6 6 N 1.31619 * 119.99401 * 11.40427 * 5 3 2 7 7 Si 1.86789 * 120.00260 * 191.40521 * 5 3 2 8 8 H 1.48501 * 109.47262 * 90.00012 * 7 5 3 9 9 H 1.48497 * 109.47406 * 210.00060 * 7 5 3 10 10 H 1.48503 * 109.47401 * 330.00045 * 7 5 3 11 11 C 1.46494 * 119.99840 * 179.97438 * 2 1 3 12 12 N 1.46503 * 109.46919 * 270.00173 * 11 2 1 13 13 N 1.39516 * 119.07098 * 75.00069 * 12 11 2 14 14 C 1.31086 * 122.47928 * 179.72419 * 13 12 11 15 15 C 1.47516 * 120.09533 * 179.97438 * 14 13 12 16 16 C 1.34970 * 125.28355 * 34.30254 * 15 14 13 17 17 C 1.37852 * 114.68912 * 179.79673 * 16 15 14 18 18 C 1.33687 * 115.08279 * 0.49437 * 17 16 15 19 19 S 1.75859 * 109.77206 * 359.73214 * 18 17 16 20 20 C 1.47130 * 119.80545 * 359.97438 * 14 13 12 21 21 C 1.39355 * 121.78558 * 180.02562 * 20 14 13 22 22 C 1.37769 * 119.58955 * 179.97438 * 21 20 14 23 23 C 1.38866 * 120.72455 * 0.02562 * 22 21 20 24 24 C 1.37757 * 120.65893 * 359.97438 * 23 22 21 25 25 C 1.39426 * 119.53105 * 0.02562 * 24 23 22 26 26 C 1.34861 * 119.06373 * 254.72671 * 12 11 2 27 27 O 1.21819 * 120.50252 * 0.26210 * 26 12 11 28 28 H 1.08997 * 109.47134 * 275.22007 * 1 2 3 29 29 H 1.09004 * 109.46784 * 35.21543 * 1 2 3 30 30 H 1.08998 * 109.47490 * 155.21608 * 1 2 3 31 31 H 0.97002 * 119.99871 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.47592 * 150.00378 * 11 2 1 33 33 H 1.08999 * 109.47131 * 29.99499 * 11 2 1 34 34 H 1.08003 * 122.64775 * 359.97438 * 16 15 14 35 35 H 1.08004 * 122.46031 * 180.23147 * 17 16 15 36 36 H 1.07997 * 125.11526 * 179.75924 * 18 17 16 37 37 H 1.07994 * 120.20570 * 0.02562 * 21 20 14 38 38 H 1.07998 * 119.63950 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.67420 * 180.02562 * 23 22 21 40 40 H 1.07994 * 120.23099 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1957 1.2055 -0.2679 5 6 1.4993 2.3630 0.3443 6 7 0.2994 2.3182 0.8834 7 14 2.3269 4.0101 0.0424 8 1 1.9711 4.5018 -1.3129 9 1 1.8676 4.9888 1.0604 10 1 3.7999 3.8492 0.1396 11 6 2.1975 -1.2687 0.0006 12 7 2.4416 -1.6910 1.3820 13 7 1.3857 -2.2176 2.1265 14 6 1.5302 -2.6208 3.3654 15 6 0.3771 -3.1689 4.1043 16 6 -0.6193 -3.9008 3.5627 17 6 -1.5873 -4.3063 4.4566 18 6 -1.3977 -3.9053 5.7177 19 16 0.0834 -2.9636 5.8263 20 6 2.8460 -2.5251 4.0169 21 6 3.0463 -2.9419 5.3315 22 6 4.2978 -2.8321 5.8967 23 6 5.3608 -2.3105 5.1711 24 6 5.1853 -1.8924 3.8703 25 6 3.9267 -1.9948 3.2794 26 6 3.6819 -1.5649 1.8962 27 8 4.5860 -1.1019 1.2235 28 1 -0.3633 0.0935 1.0234 29 1 -0.3633 0.8396 -0.5926 30 1 -0.3634 -0.9330 -0.4308 31 1 -0.1550 3.1407 1.1243 32 1 3.1499 -1.1387 -0.5132 33 1 1.6083 -2.0286 -0.5128 34 1 -0.6538 -4.1515 2.5128 35 1 -2.4386 -4.9006 4.1590 36 1 -2.0551 -4.1268 6.5455 37 1 2.2257 -3.3492 5.9033 38 1 4.4539 -3.1545 6.9156 39 1 6.3349 -2.2325 5.6309 40 1 6.0169 -1.4882 3.3123 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060296161.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:53 Heat of formation + Delta-G solvation = 108.635170 kcal Electronic energy + Delta-G solvation = -26977.289180 eV Core-core repulsion = 23272.007387 eV Total energy + Delta-G solvation = -3705.281793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 341.094 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.47717 -38.16890 -37.83764 -36.40247 -35.45404 -32.91064 -31.50873 -30.72456 -30.38264 -28.74692 -26.26837 -25.86772 -24.74404 -23.50314 -23.27683 -21.54497 -21.19060 -19.48186 -18.52841 -17.88114 -17.30190 -16.77592 -16.11049 -15.56565 -15.42456 -15.25623 -14.60764 -14.41362 -14.39054 -14.03272 -13.56703 -13.39205 -13.20487 -13.11803 -12.64187 -12.53663 -12.28216 -12.08209 -11.93717 -11.75970 -11.43721 -11.36788 -11.00612 -10.84222 -10.78563 -10.53848 -10.34408 -10.11167 -10.04172 -9.35255 -9.29582 -9.01579 -8.82856 -8.69054 -8.44002 -7.68110 -7.17278 -5.89471 -3.32539 0.58191 0.82481 1.08866 1.42227 1.93203 2.37980 2.82050 2.95159 3.14132 3.35037 3.38934 3.42832 4.10350 4.18072 4.39463 4.45792 4.72919 4.85753 5.00607 5.12561 5.28650 5.30873 5.36898 5.42089 5.48574 5.59330 5.65519 5.85936 5.90735 6.03385 6.11080 6.22089 6.28236 6.35157 6.40965 6.43373 6.59750 6.68185 6.76740 6.89999 7.36646 7.66988 7.75780 8.17641 8.28457 8.59113 9.04760 9.62592 10.06931 11.12633 Molecular weight = 341.09amu Principal moments of inertia in cm(-1) A = 0.010282 B = 0.004577 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.593260 B = 6115.520970 C = 7524.310402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.560 5.560 3 C -0.264 4.264 4 H 0.082 0.918 5 C 0.008 3.992 6 N -0.898 5.898 7 Si 0.913 3.087 8 H -0.283 1.283 9 H -0.289 1.289 10 H -0.276 1.276 11 C 0.343 3.657 12 N -0.412 5.412 13 N -0.186 5.186 14 C 0.149 3.851 15 C -0.118 4.118 16 C -0.102 4.102 17 C -0.131 4.131 18 C -0.223 4.223 19 S 0.134 5.866 20 C -0.041 4.041 21 C -0.117 4.117 22 C -0.092 4.092 23 C -0.125 4.125 24 C -0.054 4.054 25 C -0.123 4.123 26 C 0.519 3.481 27 O -0.527 6.527 28 H 0.033 0.967 29 H 0.059 0.941 30 H 0.003 0.997 31 H 0.256 0.744 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.147 0.853 35 H 0.142 0.858 36 H 0.165 0.835 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 -15.162 11.714 19.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.278 5.278 3 C -0.394 4.394 4 H 0.099 0.901 5 C -0.192 4.192 6 N -0.541 5.541 7 Si 0.742 3.258 8 H -0.210 1.210 9 H -0.215 1.215 10 H -0.201 1.201 11 C 0.136 3.864 12 N -0.238 5.238 13 N 0.001 4.999 14 C -0.034 4.034 15 C -0.237 4.237 16 C -0.135 4.135 17 C -0.162 4.162 18 C -0.359 4.359 19 S 0.398 5.602 20 C -0.045 4.045 21 C -0.138 4.138 22 C -0.111 4.111 23 C -0.144 4.144 24 C -0.073 4.073 25 C -0.130 4.130 26 C 0.309 3.691 27 O -0.403 6.403 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.022 0.978 31 H 0.067 0.933 32 H 0.117 0.883 33 H 0.091 0.909 34 H 0.165 0.835 35 H 0.160 0.840 36 H 0.182 0.818 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.149 0.851 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.742 -13.771 11.579 18.008 hybrid contribution 0.116 0.361 -0.358 0.521 sum 0.858 -13.411 11.222 17.507 Atomic orbital electron populations 1.21020 0.81163 0.96163 1.00178 1.44998 1.03290 1.01260 1.78272 1.19508 0.95728 0.83869 1.40301 0.90059 1.25102 0.96987 0.98897 0.98232 1.70144 1.13916 1.26862 1.43190 0.86111 0.79150 0.82899 0.77636 1.20986 1.21521 1.20097 1.22063 0.97838 0.87246 0.79270 1.53105 1.03691 1.52282 1.14745 1.74736 1.15939 1.03466 1.05770 1.20300 0.90077 1.01803 0.91239 1.22070 0.98888 1.06397 0.96339 1.20409 0.92977 0.98578 1.01489 1.20056 1.00803 1.03024 0.92274 1.25906 1.02199 1.06318 1.01482 1.84191 1.18494 1.52828 1.04719 1.19496 0.92246 0.98027 0.94780 1.21377 0.98045 1.00577 0.93753 1.21241 0.92363 0.97595 0.99892 1.21227 0.99399 0.99590 0.94231 1.21128 0.95888 0.95649 0.94660 1.20299 0.94684 1.02851 0.95139 1.18929 0.84075 0.79258 0.86811 1.90816 1.42911 1.44978 1.61604 0.94822 0.92274 0.97796 0.93336 0.88255 0.90933 0.83548 0.84047 0.81775 0.84570 0.85195 0.85139 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 9.01 59.85 0.54 4.50 16 2 N -0.56 -14.43 3.17 -184.86 -0.59 -15.02 16 3 C -0.26 -7.46 9.74 -15.06 -0.15 -7.61 16 4 H 0.08 2.33 7.83 -52.49 -0.41 1.92 16 5 C 0.01 0.22 5.16 -17.43 -0.09 0.13 16 6 N -0.90 -26.21 10.26 55.49 0.57 -25.64 16 7 Si 0.91 22.38 29.57 -169.99 -5.03 17.36 16 8 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 C 0.34 7.62 6.42 -63.75 -0.41 7.22 16 12 N -0.41 -9.09 3.74 -64.70 -0.24 -9.34 16 13 N -0.19 -3.82 11.24 34.47 0.39 -3.43 16 14 C 0.15 2.67 6.94 -80.80 -0.56 2.11 16 15 C -0.12 -1.76 5.95 -36.96 -0.22 -1.98 16 16 C -0.10 -1.34 9.99 -40.88 -0.41 -1.75 16 17 C -0.13 -1.39 10.16 -41.32 -0.42 -1.81 16 18 C -0.22 -2.22 11.23 29.14 0.33 -1.89 16 19 S 0.13 1.59 19.90 -107.50 -2.14 -0.55 16 20 C -0.04 -0.71 5.90 -104.76 -0.62 -1.32 16 21 C -0.12 -1.56 9.10 -39.34 -0.36 -1.91 16 22 C -0.09 -1.04 10.01 -39.52 -0.40 -1.43 16 23 C -0.13 -1.49 10.01 -39.53 -0.40 -1.89 16 24 C -0.05 -0.84 9.66 -39.32 -0.38 -1.22 16 25 C -0.12 -2.31 5.89 -104.84 -0.62 -2.93 16 26 C 0.52 11.52 7.70 -12.72 -0.10 11.42 16 27 O -0.53 -12.71 15.90 5.08 0.08 -12.63 16 28 H 0.03 0.92 7.53 -51.93 -0.39 0.53 16 29 H 0.06 1.57 6.84 -51.93 -0.36 1.21 16 30 H 0.00 0.08 7.83 -51.93 -0.41 -0.33 16 31 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.10 2.23 6.86 -51.93 -0.36 1.87 16 33 H 0.07 1.41 7.86 -51.93 -0.41 1.00 16 34 H 0.15 1.87 8.06 -52.48 -0.42 1.45 16 35 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.14 1.57 4.66 -35.29 -0.16 1.40 16 38 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 40 H 0.14 2.09 7.79 -52.49 -0.41 1.69 16 LS Contribution 353.79 15.07 5.33 5.33 Total: -1.00 -33.34 353.79 -10.03 -43.37 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.15 Total: 0.91 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -4.25 Total: -0.36 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: 0.13 Total: -53.43 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.63 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.36 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.14 Total: -0.55 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.34 -10.03 -43.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060296161.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.006 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds