Wall clock time and date at job start Tue Mar 31 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 120.00069 * 2 1 4 4 H 1.48496 * 109.46615 * 269.99380 * 3 2 1 5 5 H 1.48493 * 109.46928 * 29.99332 * 3 2 1 6 6 H 1.48494 * 109.47070 * 149.99733 * 3 2 1 7 7 C 1.37879 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99775 * 0.02562 * 7 2 1 9 9 C 1.50692 * 120.00145 * 180.02562 * 7 2 1 10 10 N 1.46503 * 109.47334 * 180.02562 * 9 7 2 11 11 N 1.40060 * 125.87484 * 270.00573 * 10 9 7 12 12 C 1.30255 * 109.69653 * 179.97438 * 11 10 9 13 13 C 1.41159 * 108.46933 * 359.97438 * 12 11 10 14 14 C 1.36316 * 125.87241 * 89.99758 * 10 9 7 15 15 N 1.33198 * 134.61590 * 0.02562 * 14 10 9 16 16 C 1.31499 * 120.68372 * 179.97438 * 15 14 10 17 17 N 1.32129 * 122.64755 * 359.66844 * 16 15 14 18 18 C 1.32856 * 121.18931 * 0.63685 * 17 16 15 19 19 N 1.38106 * 120.81135 * 179.69719 * 18 17 16 20 20 C 1.46500 * 120.00013 * 359.71884 * 19 18 17 21 21 C 1.53006 * 109.46998 * 180.02562 * 20 19 18 22 22 N 1.46500 * 109.46998 * 180.02562 * 21 20 19 23 23 C 1.38991 * 120.00440 * 179.97438 * 22 21 20 24 24 C 1.39348 * 120.09201 * 0.02562 * 23 22 21 25 25 N 1.31918 * 119.88972 * 179.97438 * 24 23 22 26 26 C 1.32277 * 120.08820 * 0.02562 * 25 24 23 27 27 C 1.38158 * 120.19329 * 359.96989 * 26 25 24 28 28 N 1.32254 * 120.10641 * 359.79508 * 27 26 25 29 29 H 0.97003 * 119.99786 * 0.02562 * 1 2 3 30 30 H 1.09000 * 109.47064 * 60.00443 * 9 7 2 31 31 H 1.09002 * 109.47693 * 300.00144 * 9 7 2 32 32 H 1.08003 * 125.76189 * 179.97438 * 12 11 10 33 33 H 1.08005 * 118.67588 * 180.02562 * 16 15 14 34 34 H 0.97010 * 120.00079 * 179.72355 * 19 18 17 35 35 H 1.08993 * 109.47452 * 60.00251 * 20 19 18 36 36 H 1.09000 * 109.47175 * 300.00041 * 20 19 18 37 37 H 1.09000 * 109.47050 * 299.99945 * 21 20 19 38 38 H 1.09001 * 109.46801 * 60.00058 * 21 20 19 39 39 H 0.97010 * 119.99910 * 359.97438 * 22 21 20 40 40 H 1.08003 * 120.05322 * 359.95643 * 24 23 22 41 41 H 1.07997 * 119.90296 * 179.97438 * 26 25 24 42 42 H 1.07994 * 119.94566 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 3.9999 -2.5753 0.0010 11 7 4.2730 -3.3494 1.1358 12 6 4.6897 -4.5289 0.7728 13 6 4.7082 -4.5821 -0.6377 14 6 4.2666 -3.3281 -1.1037 15 7 4.1940 -3.1202 -2.4173 16 6 4.5295 -4.0669 -3.2661 17 7 4.9563 -5.2551 -2.8764 18 6 5.0575 -5.5612 -1.5876 19 7 5.4986 -6.8077 -1.1890 20 6 5.8559 -7.8136 -2.1924 21 6 6.3086 -9.0956 -1.4906 22 7 6.6665 -10.1013 -2.4940 23 6 7.1106 -11.3558 -2.0930 24 6 7.2157 -11.6593 -0.7370 25 7 7.6371 -12.8514 -0.3609 26 6 7.9601 -13.7575 -1.2689 27 6 7.8572 -13.4605 -2.6142 28 7 7.4312 -12.2693 -2.9998 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8912 31 1 3.8753 -0.6804 -0.8888 32 1 4.9731 -5.3307 1.4386 33 1 4.4587 -3.8631 -4.3244 34 1 5.5718 -7.0173 -0.2447 35 1 6.6663 -7.4342 -2.8148 36 1 4.9885 -8.0284 -2.8165 37 1 7.1760 -8.8812 -0.8662 38 1 5.4979 -9.4749 -0.8685 39 1 6.5936 -9.8917 -3.4383 40 1 6.9528 -10.9196 0.0047 41 1 8.3052 -14.7324 -0.9576 42 1 8.1216 -14.2034 -3.3521 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065519825.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:53 Heat of formation + Delta-G solvation = 182.554559 kcal Electronic energy + Delta-G solvation = -26978.466773 eV Core-core repulsion = 22995.941658 eV Total energy + Delta-G solvation = -3982.525115 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.53884 -41.36161 -38.73732 -37.65495 -36.02657 -34.42389 -33.78953 -32.56223 -31.57918 -31.16820 -29.84594 -28.13662 -27.62232 -25.30437 -24.11230 -24.07530 -23.12165 -22.70229 -22.11697 -20.20336 -18.54212 -18.10320 -17.77551 -17.35148 -17.14640 -16.92905 -16.48692 -16.25088 -15.43784 -15.36021 -15.18520 -14.95529 -14.75627 -14.34517 -14.13080 -13.83862 -13.71162 -13.34909 -13.14655 -12.71181 -12.48821 -12.30290 -12.07585 -11.89812 -11.83258 -11.37735 -11.12233 -11.06790 -10.74543 -10.64564 -10.31200 -10.22112 -9.73085 -9.49143 -9.42059 -8.83387 -8.76179 -8.40235 -8.36136 -7.78737 -6.24908 -4.27839 0.55442 0.88871 1.16320 1.79547 2.17828 2.78947 2.91876 3.11316 3.19093 3.24566 3.26754 3.41351 3.95795 3.99576 4.10056 4.16549 4.23637 4.24858 4.47392 4.50750 4.59971 4.77095 4.79501 4.82822 4.84138 5.00054 5.06182 5.06467 5.31112 5.37394 5.46334 5.58704 5.81570 6.13212 6.19581 6.42862 6.47106 6.72429 6.80563 6.85358 7.04176 7.08871 7.26826 7.32472 7.53001 7.70366 8.04453 8.27594 8.66105 8.76787 9.29683 10.87737 Molecular weight = 340.15amu Principal moments of inertia in cm(-1) A = 0.031731 B = 0.001752 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.199494 B =15976.953401 C =16410.568218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.875 3.125 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.331 5.331 11 N -0.239 5.239 12 C 0.072 3.928 13 C -0.334 4.334 14 C 0.367 3.633 15 N -0.554 5.554 16 C 0.370 3.630 17 N -0.616 5.616 18 C 0.511 3.489 19 N -0.706 5.706 20 C 0.124 3.876 21 C 0.111 3.889 22 N -0.710 5.710 23 C 0.359 3.641 24 C -0.009 4.009 25 N -0.403 5.403 26 C -0.025 4.025 27 C 0.106 3.894 28 N -0.505 5.505 29 H 0.269 0.731 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.185 0.815 33 H 0.197 0.803 34 H 0.412 0.588 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.411 0.589 40 H 0.164 0.836 41 H 0.166 0.834 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.024 -23.756 -4.572 29.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.701 3.299 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.578 4.578 8 H 0.096 0.904 9 C 0.118 3.882 10 N -0.117 5.117 11 N -0.054 5.054 12 C -0.123 4.123 13 C -0.352 4.352 14 C 0.119 3.881 15 N -0.278 5.278 16 C 0.076 3.924 17 N -0.347 5.347 18 C 0.259 3.741 19 N -0.340 5.340 20 C -0.001 4.001 21 C -0.014 4.014 22 N -0.343 5.343 23 C 0.120 3.880 24 C -0.178 4.178 25 N -0.116 5.116 26 C -0.186 4.186 27 C -0.055 4.055 28 N -0.228 5.228 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.202 0.798 33 H 0.214 0.786 34 H 0.248 0.752 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.248 0.752 40 H 0.181 0.819 41 H 0.183 0.817 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 16.398 -22.332 -4.398 28.053 hybrid contribution 0.374 0.207 0.091 0.437 sum 16.772 -22.126 -4.307 28.096 Atomic orbital electron populations 1.69870 1.06166 1.27405 1.48938 1.24771 0.94839 0.98833 0.93952 0.86873 0.80337 0.83613 0.79120 1.19489 1.20496 1.18873 1.21095 0.87849 0.95487 1.53325 0.90397 1.20102 0.96709 0.72405 0.98963 1.48978 1.50383 1.13247 0.99090 1.76959 1.15973 1.03595 1.08883 1.23409 1.00347 0.96250 0.92288 1.19570 1.22054 0.98217 0.95360 1.18905 0.92396 0.88356 0.88460 1.67509 1.24642 1.35713 0.99947 1.24439 0.86663 0.82057 0.99240 1.67942 1.28546 1.23712 1.14451 1.17786 0.84361 0.83683 0.88262 1.43927 1.71022 1.10176 1.08909 1.21260 1.01623 0.86052 0.91193 1.21588 1.00831 0.87674 0.91352 1.44161 1.70871 1.09454 1.09846 1.19327 0.90959 0.86945 0.90786 1.23125 1.04997 0.96194 0.93497 1.68226 1.04917 1.00658 1.37834 1.23362 1.04203 1.00430 0.90564 1.23478 0.92877 0.92759 0.96349 1.67949 1.15684 1.02372 1.36789 0.92113 0.92997 0.93054 0.79766 0.78650 0.75156 0.90464 0.90431 0.90690 0.90633 0.75227 0.81894 0.81725 0.81402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.96 55.43 0.77 -25.98 16 2 C 0.08 2.28 5.47 -17.82 -0.10 2.19 16 3 Si 0.87 20.62 27.47 -169.99 -4.67 15.95 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.54 -15.46 9.94 -34.44 -0.34 -15.81 16 8 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 9 C 0.24 5.83 5.26 -5.20 -0.03 5.80 16 10 N -0.33 -7.53 3.63 -61.64 -0.22 -7.76 16 11 N -0.24 -4.83 12.45 30.80 0.38 -4.44 16 12 C 0.07 1.12 11.87 -17.11 -0.20 0.92 16 13 C -0.33 -5.59 6.14 -106.82 -0.66 -6.25 16 14 C 0.37 7.66 8.04 -156.23 -1.26 6.40 16 15 N -0.55 -11.03 10.47 -13.96 -0.15 -11.18 16 16 C 0.37 5.77 12.24 -92.12 -1.13 4.64 16 17 N -0.62 -8.87 9.69 -13.62 -0.13 -9.00 16 18 C 0.51 7.01 7.55 -154.85 -1.17 5.84 16 19 N -0.71 -6.07 5.68 -60.08 -0.34 -6.41 16 20 C 0.12 0.80 5.85 -4.04 -0.02 0.78 16 21 C 0.11 0.49 5.02 -4.04 -0.02 0.47 16 22 N -0.71 -4.21 5.73 -60.30 -0.35 -4.55 16 23 C 0.36 2.83 7.67 -154.74 -1.19 1.64 16 24 C -0.01 -0.07 10.49 -17.10 -0.18 -0.25 16 25 N -0.40 -3.53 10.49 -12.88 -0.14 -3.67 16 26 C -0.03 -0.17 11.21 -17.39 -0.19 -0.36 16 27 C 0.11 0.68 11.21 -17.40 -0.20 0.48 16 28 N -0.50 -4.32 10.53 -12.24 -0.13 -4.45 16 29 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.05 1.25 7.20 -51.93 -0.37 0.87 16 31 H 0.05 1.24 7.57 -51.93 -0.39 0.85 16 32 H 0.19 1.81 8.06 -52.48 -0.42 1.38 16 33 H 0.20 2.26 8.06 -52.48 -0.42 1.84 16 34 H 0.41 2.50 8.34 -40.82 -0.34 2.16 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.27 7.94 -51.93 -0.41 -0.14 16 38 H 0.08 0.29 7.94 -51.93 -0.41 -0.12 16 39 H 0.41 2.29 8.60 -40.82 -0.35 1.94 16 40 H 0.16 0.89 6.73 -52.48 -0.35 0.54 16 41 H 0.17 0.61 8.06 -52.49 -0.42 0.19 16 42 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -36.92 368.02 -10.86 -47.78 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -4.76 Total: 1.66 kcal Atomic # 6 Polarization: 13.18 SS G_CDS: -6.68 Total: 6.50 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -0.30 Total: -77.43 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.92 -10.86 -47.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065519825.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 230.333 kcal (2) G-P(sol) polarization free energy of solvation -36.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds