Wall clock time and date at job start Tue Mar 31 2020 06:14:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47226 * 239.99628 * 3 2 1 5 5 H 1.48503 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47161 * 119.99711 * 3 2 1 7 7 C 1.37874 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00338 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00005 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47150 * 179.97438 * 9 7 2 11 11 N 1.40065 * 125.87330 * 270.31295 * 10 9 7 12 12 C 1.30249 * 109.69128 * 180.16223 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.57642 * 12 11 10 14 14 C 1.36308 * 125.86988 * 90.00495 * 10 9 7 15 15 N 1.33199 * 134.61952 * 359.97438 * 14 10 9 16 16 C 1.31512 * 120.68272 * 180.02562 * 15 14 10 17 17 N 1.32124 * 122.64693 * 359.97438 * 16 15 14 18 18 C 1.32858 * 121.19386 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81367 * 179.97438 * 18 17 16 20 20 C 1.46494 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.52999 * 109.47484 * 179.97438 * 20 19 18 22 22 C 1.50695 * 109.47459 * 180.02562 * 21 20 19 23 23 C 1.38251 * 119.97254 * 269.73230 * 22 21 20 24 24 C 1.38198 * 120.02233 * 179.72812 * 23 22 21 25 25 C 1.38459 * 119.97711 * 0.55893 * 24 23 22 26 26 F 1.35096 * 120.03154 * 179.68595 * 25 24 23 27 27 C 1.38462 * 119.94624 * 359.71136 * 25 24 23 28 28 C 1.38198 * 119.97572 * 359.97438 * 27 25 24 29 29 H 0.96999 * 120.00033 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46776 * 60.00100 * 9 7 2 31 31 H 1.08998 * 109.47449 * 300.00035 * 9 7 2 32 32 H 1.08002 * 125.76682 * 179.84835 * 12 11 10 33 33 H 1.08001 * 118.67412 * 179.97438 * 16 15 14 34 34 H 0.96999 * 119.99740 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47529 * 300.00389 * 20 19 18 36 36 H 1.09003 * 109.46889 * 59.99897 * 20 19 18 37 37 H 1.08997 * 109.47189 * 300.00762 * 21 20 19 38 38 H 1.08999 * 109.46538 * 60.00232 * 21 20 19 39 39 H 1.07996 * 119.99014 * 359.97295 * 23 22 21 40 40 H 1.08005 * 120.01374 * 180.25042 * 24 23 22 41 41 H 1.08003 * 120.01583 * 179.97438 * 27 25 24 42 42 H 1.07998 * 119.99319 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 7 2.7411 -4.2325 -1.1344 12 6 3.5499 -5.1868 -0.7715 13 6 3.5863 -5.2299 0.6391 14 6 2.7220 -4.2198 1.1051 15 7 2.5792 -4.0524 2.4188 16 6 3.2323 -4.8157 3.2675 17 7 4.0523 -5.7756 2.8777 18 6 4.2614 -6.0207 1.5888 19 7 5.1206 -7.0257 1.1901 20 6 5.8142 -7.8372 2.1933 21 6 6.6972 -8.8710 1.4914 22 6 7.4102 -9.7062 2.5234 23 6 8.6502 -9.3142 2.9925 24 6 9.3025 -10.0764 3.9431 25 6 8.7189 -11.2391 4.4170 26 9 9.3585 -11.9884 5.3415 27 6 7.4795 -11.6336 3.9422 28 6 6.8262 -10.8664 2.9965 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8902 32 1 4.1029 -5.8330 -1.4371 33 1 3.0926 -4.6514 4.3258 34 1 5.2649 -7.1942 0.2458 35 1 6.4340 -7.1929 2.8167 36 1 5.0810 -8.3494 2.8164 37 1 6.0772 -9.5153 0.8682 38 1 7.4304 -8.3591 0.8681 39 1 9.1075 -8.4099 2.6191 40 1 10.2694 -9.7678 4.3125 41 1 7.0235 -12.5406 4.3108 42 1 5.8593 -11.1737 2.6263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065520043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:13 Heat of formation + Delta-G solvation = 89.627331 kcal Electronic energy + Delta-G solvation = -27083.938742 eV Core-core repulsion = 22979.745376 eV Total energy + Delta-G solvation = -4104.193366 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.135 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.26763 -41.38457 -39.71980 -38.48068 -36.67424 -34.01048 -33.39805 -31.87978 -31.58196 -31.28035 -29.87741 -27.93770 -27.13615 -24.20048 -23.92486 -23.51009 -23.13131 -22.12658 -21.49427 -20.09512 -18.11257 -17.86904 -17.42435 -16.87332 -16.67130 -16.40754 -15.99005 -15.82877 -15.40825 -15.28887 -14.74169 -14.61338 -14.45386 -14.01016 -13.98317 -13.70663 -13.66738 -13.33283 -13.07261 -13.06030 -12.20195 -12.03143 -12.01325 -11.98505 -11.64554 -11.43504 -11.13840 -10.97630 -10.90739 -10.74648 -10.28557 -10.09252 -9.85040 -9.55624 -9.26595 -8.99428 -8.68044 -8.59076 -8.22805 -7.64765 -6.21601 -4.28182 0.66987 0.78729 1.30171 1.93833 2.89551 3.00741 3.08146 3.19245 3.26450 3.29509 3.34431 3.85024 4.23714 4.31215 4.31760 4.39853 4.45767 4.56001 4.64699 4.73217 4.75018 4.81869 4.99088 5.02302 5.13327 5.14676 5.20398 5.43364 5.49677 5.59504 5.59659 5.69036 5.70349 5.75516 5.80375 6.08192 6.31165 6.44301 6.67001 6.90053 7.03029 7.10361 7.22629 7.49431 7.71982 7.90358 7.92249 8.22515 8.71680 8.82556 9.36724 10.86564 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.001816 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.113493 B =15414.195127 C =15638.148957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.068 3.932 13 C -0.338 4.338 14 C 0.363 3.637 15 N -0.554 5.554 16 C 0.367 3.633 17 N -0.618 5.618 18 C 0.509 3.491 19 N -0.709 5.709 20 C 0.137 3.863 21 C -0.094 4.094 22 C -0.088 4.088 23 C -0.083 4.083 24 C -0.152 4.152 25 C 0.094 3.906 26 F -0.142 7.142 27 C -0.152 4.152 28 C -0.083 4.083 29 H 0.268 0.732 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.182 0.818 33 H 0.195 0.805 34 H 0.409 0.591 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.997 -23.231 5.289 28.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.059 5.059 12 C -0.127 4.127 13 C -0.356 4.356 14 C 0.115 3.885 15 N -0.279 5.279 16 C 0.073 3.927 17 N -0.348 5.348 18 C 0.256 3.744 19 N -0.343 5.343 20 C 0.013 3.987 21 C -0.132 4.132 22 C -0.089 4.089 23 C -0.101 4.101 24 C -0.170 4.170 25 C 0.075 3.925 26 F -0.120 7.120 27 C -0.171 4.171 28 C -0.102 4.102 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.199 0.801 33 H 0.211 0.789 34 H 0.245 0.755 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.152 0.848 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.040 -22.192 5.312 27.330 hybrid contribution 1.089 0.236 -0.291 1.151 sum 16.129 -21.957 5.021 27.703 Atomic orbital electron populations 1.69907 1.05994 1.27739 1.49250 1.24896 0.94990 0.99350 0.94446 0.86401 0.79441 0.81875 0.78859 1.20038 1.20888 1.19960 1.21205 0.93497 0.89691 1.52857 0.92119 1.19796 0.85683 0.79850 0.99995 1.49463 1.35700 1.27873 0.98790 1.76940 1.11458 1.08090 1.09400 1.23363 0.99215 0.97846 0.92302 1.19618 1.12646 1.07955 0.95335 1.18945 0.91084 0.89965 0.88530 1.67521 1.29539 1.30796 1.00008 1.24415 0.85150 0.83981 0.99187 1.67948 1.26690 1.25655 1.14549 1.17879 0.84193 0.84105 0.88213 1.44269 1.46463 1.34452 1.09101 1.21255 0.94894 0.91867 0.90657 1.20811 0.98929 0.96993 0.96472 1.19720 0.94977 0.95725 0.98454 1.20974 0.94271 0.99247 0.95651 1.21168 1.01677 0.94691 0.99507 1.17768 0.92452 0.91544 0.90783 1.91504 1.81439 1.75465 1.63606 1.21164 0.94369 1.01942 0.99588 1.20963 0.99700 0.93782 0.95712 0.92208 0.92810 0.92232 0.80082 0.78872 0.75461 0.91203 0.91217 0.89955 0.89940 0.84784 0.84677 0.84684 0.84799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.53 -15.23 9.39 -34.44 -0.32 -15.55 16 8 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 9 C 0.26 7.02 6.19 -5.19 -0.03 6.99 16 10 N -0.33 -7.90 3.63 -61.64 -0.22 -8.12 16 11 N -0.24 -5.13 12.45 30.80 0.38 -4.75 16 12 C 0.07 1.11 11.87 -17.11 -0.20 0.91 16 13 C -0.34 -5.99 6.14 -106.82 -0.66 -6.64 16 14 C 0.36 7.94 8.04 -156.24 -1.26 6.68 16 15 N -0.55 -11.63 10.47 -13.97 -0.15 -11.77 16 16 C 0.37 6.11 12.24 -92.11 -1.13 4.98 16 17 N -0.62 -9.64 9.69 -13.62 -0.13 -9.78 16 18 C 0.51 7.56 7.55 -154.85 -1.17 6.39 16 19 N -0.71 -7.04 5.68 -60.09 -0.34 -7.39 16 20 C 0.14 1.10 5.71 -4.04 -0.02 1.08 16 21 C -0.09 -0.49 5.46 -27.89 -0.15 -0.64 16 22 C -0.09 -0.54 5.13 -104.62 -0.54 -1.07 16 23 C -0.08 -0.51 9.70 -39.59 -0.38 -0.90 16 24 C -0.15 -1.03 10.03 -39.51 -0.40 -1.43 16 25 C 0.09 0.74 7.30 -39.42 -0.29 0.45 16 26 F -0.14 -1.27 17.27 2.25 0.04 -1.23 16 27 C -0.15 -1.02 10.03 -39.51 -0.40 -1.42 16 28 C -0.08 -0.50 9.70 -39.59 -0.38 -0.89 16 29 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.05 1.48 8.14 -51.93 -0.42 1.05 16 31 H 0.06 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.18 1.96 8.06 -52.49 -0.42 1.53 16 33 H 0.19 2.44 8.06 -52.49 -0.42 2.02 16 34 H 0.41 3.04 8.34 -40.82 -0.34 2.70 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 38 H 0.08 0.36 8.08 -51.93 -0.42 -0.06 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.19 16 40 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.14 0.70 8.06 -52.48 -0.42 0.28 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 LS Contribution 374.82 15.07 5.65 5.65 Total: -1.00 -33.88 374.82 -11.44 -45.32 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.95 Total: -0.30 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -7.43 Total: 0.72 kcal Atomic # 7 Polarization: -67.09 SS G_CDS: 0.28 Total: -66.81 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.88 -11.44 -45.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.948 kcal (2) G-P(sol) polarization free energy of solvation -33.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.321 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds