Wall clock time and date at job start Tue Mar 31 2020 06:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47226 * 239.99628 * 3 2 1 5 5 H 1.48503 * 109.47295 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47161 * 119.99711 * 3 2 1 7 7 C 1.37874 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00338 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00005 * 0.02562 * 7 2 1 10 10 N 1.46505 * 109.47150 * 179.97438 * 9 7 2 11 11 N 1.40065 * 125.87330 * 270.31295 * 10 9 7 12 12 C 1.30249 * 109.69128 * 180.16223 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.57642 * 12 11 10 14 14 C 1.36308 * 125.86988 * 90.00495 * 10 9 7 15 15 N 1.33199 * 134.61952 * 359.97438 * 14 10 9 16 16 C 1.31512 * 120.68272 * 180.02562 * 15 14 10 17 17 N 1.32124 * 122.64693 * 359.97438 * 16 15 14 18 18 C 1.32858 * 121.19386 * 0.02562 * 17 16 15 19 19 N 1.38108 * 120.81367 * 179.97438 * 18 17 16 20 20 C 1.46494 * 120.00075 * 0.02562 * 19 18 17 21 21 C 1.52999 * 109.47484 * 179.97438 * 20 19 18 22 22 C 1.50695 * 109.47459 * 180.02562 * 21 20 19 23 23 C 1.38251 * 119.97254 * 269.73230 * 22 21 20 24 24 C 1.38198 * 120.02233 * 179.72812 * 23 22 21 25 25 C 1.38459 * 119.97711 * 0.55893 * 24 23 22 26 26 F 1.35096 * 120.03154 * 179.68595 * 25 24 23 27 27 C 1.38462 * 119.94624 * 359.71136 * 25 24 23 28 28 C 1.38198 * 119.97572 * 359.97438 * 27 25 24 29 29 H 0.96999 * 120.00033 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46776 * 60.00100 * 9 7 2 31 31 H 1.08998 * 109.47449 * 300.00035 * 9 7 2 32 32 H 1.08002 * 125.76682 * 179.84835 * 12 11 10 33 33 H 1.08001 * 118.67412 * 179.97438 * 16 15 14 34 34 H 0.96999 * 119.99740 * 180.02562 * 19 18 17 35 35 H 1.08997 * 109.47529 * 300.00389 * 20 19 18 36 36 H 1.09003 * 109.46889 * 59.99897 * 20 19 18 37 37 H 1.08997 * 109.47189 * 300.00762 * 21 20 19 38 38 H 1.08999 * 109.46538 * 60.00232 * 21 20 19 39 39 H 1.07996 * 119.99014 * 359.97295 * 23 22 21 40 40 H 1.08005 * 120.01374 * 180.25042 * 24 23 22 41 41 H 1.08003 * 120.01583 * 179.97438 * 27 25 24 42 42 H 1.07998 * 119.99319 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 7 2.7411 -4.2325 -1.1344 12 6 3.5499 -5.1868 -0.7715 13 6 3.5863 -5.2299 0.6391 14 6 2.7220 -4.2198 1.1051 15 7 2.5792 -4.0524 2.4188 16 6 3.2323 -4.8157 3.2675 17 7 4.0523 -5.7756 2.8777 18 6 4.2614 -6.0207 1.5888 19 7 5.1206 -7.0257 1.1901 20 6 5.8142 -7.8372 2.1933 21 6 6.6972 -8.8710 1.4914 22 6 7.4102 -9.7062 2.5234 23 6 8.6502 -9.3142 2.9925 24 6 9.3025 -10.0764 3.9431 25 6 8.7189 -11.2391 4.4170 26 9 9.3585 -11.9884 5.3415 27 6 7.4795 -11.6336 3.9422 28 6 6.8262 -10.8664 2.9965 29 1 -0.4850 0.8400 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5568 0.8902 32 1 4.1029 -5.8330 -1.4371 33 1 3.0926 -4.6514 4.3258 34 1 5.2649 -7.1942 0.2458 35 1 6.4340 -7.1929 2.8167 36 1 5.0810 -8.3494 2.8164 37 1 6.0772 -9.5153 0.8682 38 1 7.4304 -8.3591 0.8681 39 1 9.1075 -8.4099 2.6191 40 1 10.2694 -9.7678 4.3125 41 1 7.0235 -12.5406 4.3108 42 1 5.8593 -11.1737 2.6263 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065520043.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:12 Heat of formation + Delta-G solvation = 70.506614 kcal Electronic energy + Delta-G solvation = -27084.767878 eV Core-core repulsion = 22979.745376 eV Total energy + Delta-G solvation = -4105.022502 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.135 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.87162 -42.78605 -40.23501 -39.77653 -37.66278 -35.75681 -34.56837 -33.29329 -32.73400 -32.03387 -31.02253 -29.25485 -28.51368 -25.62468 -25.15166 -24.53918 -23.96846 -23.32041 -22.05853 -21.50176 -19.32810 -18.80289 -18.65328 -18.57759 -17.66351 -17.39920 -16.81287 -16.67116 -16.57468 -16.41501 -16.06524 -15.68366 -15.31340 -15.07261 -14.96043 -14.75431 -14.72316 -14.40216 -14.19592 -13.88158 -13.66663 -13.61709 -13.04448 -12.85882 -12.74448 -12.53973 -12.50018 -12.34322 -12.27503 -12.11197 -11.85774 -11.67177 -11.48123 -10.75136 -10.57573 -10.04977 -10.01365 -9.74237 -9.49986 -8.95623 -8.34571 -6.51656 -0.01071 0.16515 0.33148 0.55745 1.33519 1.37983 1.40981 1.49601 1.66849 2.06013 2.32330 2.65600 2.95028 3.03820 3.30755 3.35282 3.42019 3.69085 3.75259 3.81317 3.96615 4.04922 4.14054 4.16879 4.21103 4.40223 4.47421 4.52513 4.71337 4.84203 4.88616 4.96572 5.02858 5.09662 5.15570 5.22704 5.25804 5.33062 5.48384 5.58435 5.62614 5.77692 5.79157 5.97751 5.99489 6.15933 6.53924 6.62520 6.83776 7.17721 7.48437 8.72747 Molecular weight = 341.13amu Principal moments of inertia in cm(-1) A = 0.025377 B = 0.001816 C = 0.001790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.113493 B =15414.195127 C =15638.148957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.975 3.025 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.552 4.552 8 H 0.046 0.954 9 C 0.285 3.715 10 N -0.367 5.367 11 N -0.292 5.292 12 C 0.102 3.898 13 C -0.345 4.345 14 C 0.334 3.666 15 N -0.607 5.607 16 C 0.375 3.625 17 N -0.616 5.616 18 C 0.517 3.483 19 N -0.681 5.681 20 C 0.137 3.863 21 C -0.083 4.083 22 C -0.090 4.090 23 C -0.087 4.087 24 C -0.160 4.160 25 C 0.069 3.931 26 F -0.154 7.154 27 C -0.160 4.160 28 C -0.086 4.086 29 H 0.274 0.726 30 H 0.031 0.969 31 H 0.032 0.968 32 H 0.243 0.757 33 H 0.228 0.772 34 H 0.425 0.575 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.151 0.849 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.281 -24.558 4.855 30.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.798 3.202 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.590 4.590 8 H 0.064 0.936 9 C 0.166 3.834 10 N -0.153 5.153 11 N -0.107 5.107 12 C -0.093 4.093 13 C -0.363 4.363 14 C 0.087 3.913 15 N -0.334 5.334 16 C 0.083 3.917 17 N -0.347 5.347 18 C 0.262 3.738 19 N -0.314 5.314 20 C 0.014 3.986 21 C -0.120 4.120 22 C -0.091 4.091 23 C -0.105 4.105 24 C -0.179 4.179 25 C 0.050 3.950 26 F -0.133 7.133 27 C -0.178 4.178 28 C -0.104 4.104 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.050 0.950 32 H 0.259 0.741 33 H 0.244 0.756 34 H 0.265 0.735 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.169 0.831 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 17.376 -23.600 4.857 29.707 hybrid contribution 0.506 0.404 -0.053 0.649 sum 17.882 -23.196 4.804 29.680 Atomic orbital electron populations 1.70007 1.07380 1.28938 1.49417 1.25807 0.95926 1.02884 0.93601 0.85359 0.78326 0.77515 0.78975 1.19306 1.19405 1.19649 1.21359 0.92874 0.91179 1.53601 0.93579 1.19105 0.85984 0.80964 0.97391 1.49084 1.37132 1.28644 1.00479 1.76891 1.14182 1.10514 1.09091 1.24317 0.96484 0.95883 0.92585 1.19753 1.12617 1.07690 0.96223 1.19388 0.92040 0.91064 0.88774 1.67525 1.32133 1.33357 1.00392 1.25134 0.83652 0.82850 1.00089 1.68103 1.26576 1.25342 1.14717 1.18003 0.84015 0.84343 0.87412 1.44373 1.44055 1.32266 1.10688 1.21379 0.94869 0.91997 0.90397 1.20740 0.98868 0.96276 0.96113 1.19869 0.94970 0.95790 0.98502 1.21224 0.94433 0.99616 0.95222 1.21367 1.02243 0.94522 0.99769 1.18091 0.93281 0.92258 0.91393 1.91467 1.81771 1.75872 1.64206 1.21373 0.94108 1.02554 0.99803 1.21225 1.00314 0.93642 0.95211 0.91716 0.95118 0.95046 0.74110 0.75611 0.73516 0.91900 0.91677 0.88156 0.88326 0.83135 0.83839 0.83748 0.82976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.69 13.29 21.45 0.28 -54.40 16 2 C 0.02 1.07 5.46 84.65 0.46 1.53 16 3 Si 0.98 44.97 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.55 -32.89 9.39 25.60 0.24 -32.65 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 9 C 0.28 16.20 6.19 85.63 0.53 16.73 16 10 N -0.37 -18.24 3.63 -348.92 -1.27 -19.51 16 11 N -0.29 -12.44 12.45 -56.46 -0.70 -13.14 16 12 C 0.10 3.13 11.87 85.65 1.02 4.15 16 13 C -0.34 -11.71 6.14 -21.29 -0.13 -11.84 16 14 C 0.33 14.95 8.04 134.15 1.08 16.03 16 15 N -0.61 -26.07 10.47 -198.10 -2.07 -28.14 16 16 C 0.38 12.20 12.24 180.87 2.21 14.42 16 17 N -0.62 -17.92 9.69 -197.01 -1.91 -19.83 16 18 C 0.52 13.94 7.55 133.64 1.01 14.94 16 19 N -0.68 -10.58 5.68 -344.01 -1.95 -12.53 16 20 C 0.14 1.64 5.71 86.38 0.49 2.13 16 21 C -0.08 -0.47 5.46 29.85 0.16 -0.31 16 22 C -0.09 -0.80 5.13 -19.86 -0.10 -0.90 16 23 C -0.09 -0.84 9.70 22.26 0.22 -0.62 16 24 C -0.16 -1.96 10.03 22.31 0.22 -1.73 16 25 C 0.07 1.02 7.30 22.38 0.16 1.19 16 26 F -0.15 -2.76 17.27 44.97 0.78 -1.98 16 27 C -0.16 -1.91 10.03 22.31 0.22 -1.68 16 28 C -0.09 -0.80 9.70 22.26 0.22 -0.58 16 29 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.03 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.03 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.24 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.23 5.39 8.06 -2.91 -0.02 5.37 16 34 H 0.43 3.98 8.34 -92.71 -0.77 3.21 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.10 0.30 8.08 -2.39 -0.02 0.28 16 38 H 0.10 0.33 8.08 -2.39 -0.02 0.31 16 39 H 0.15 0.89 8.06 -2.91 -0.02 0.86 16 40 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 41 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.15 0.80 8.06 -2.91 -0.02 0.77 16 Total: -1.00 -79.11 374.82 3.50 -75.61 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.30 Total: 6.15 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 8.02 Total: 20.79 kcal Atomic # 7 Polarization: -139.94 SS G_CDS: -7.62 Total: -147.56 kcal Atomic # 9 Polarization: -2.76 SS G_CDS: 0.78 Total: -1.98 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -79.11 3.50 -75.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065520043.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.119 kcal (2) G-P(sol) polarization free energy of solvation -79.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds