Wall clock time and date at job start Tue Mar 31 2020 05:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47132 * 113.16029 * 3 2 1 5 5 N 1.46490 * 109.47305 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00322 * 270.00146 * 5 4 3 7 7 C 1.50707 * 109.47162 * 269.99844 * 6 5 4 8 8 H 1.07998 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99982 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47235 * 59.99855 * 11 9 7 13 13 H 1.48500 * 109.47168 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47142 * 299.99797 * 11 9 7 15 15 C 1.34780 * 120.00111 * 89.99580 * 5 4 3 16 16 O 1.21280 * 120.00423 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99795 * 0.02562 * 15 5 4 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 5 19 19 C 1.38221 * 119.99573 * 264.72607 * 18 17 15 20 20 C 1.38337 * 119.99485 * 179.72556 * 19 18 17 21 21 Cl 1.73600 * 120.00021 * 180.29706 * 20 19 18 22 22 C 1.38378 * 120.00067 * 0.56664 * 20 19 18 23 23 C 1.38176 * 119.99891 * 359.70865 * 22 20 19 24 24 C 1.38329 * 120.00284 * 84.99764 * 18 17 15 25 25 Cl 1.73601 * 119.99884 * 0.02562 * 24 18 17 26 26 H 1.09001 * 109.46962 * 353.15948 * 3 2 1 27 27 H 1.08996 * 109.46635 * 233.15718 * 3 2 1 28 28 H 1.09006 * 109.47320 * 59.99615 * 4 3 2 29 29 H 1.09002 * 109.47139 * 299.99841 * 4 3 2 30 30 H 1.09000 * 109.47018 * 29.99405 * 6 5 4 31 31 H 1.09000 * 109.47828 * 149.99700 * 6 5 4 32 32 H 0.97001 * 119.99961 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.47060 * 299.99722 * 17 15 5 34 34 H 1.09001 * 109.47380 * 59.99809 * 17 15 5 35 35 H 1.07997 * 120.00398 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.00266 * 179.68161 * 22 20 19 37 37 H 1.08003 * 119.99801 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5682 -1.3263 5 7 4.5827 0.5695 -1.3261 6 6 5.3142 1.7366 -0.8271 7 6 5.5648 2.6954 -1.9625 8 1 5.2145 2.4588 -2.9563 9 6 6.2411 3.8746 -1.7324 10 7 6.6671 4.1629 -0.5220 11 14 6.5511 5.0635 -3.1395 12 1 5.2530 5.5005 -3.7134 13 1 7.2916 6.2470 -2.6335 14 1 7.3545 4.3883 -4.1901 15 6 5.2576 -0.5032 -1.7848 16 8 6.4704 -0.5021 -1.7851 17 6 4.5051 -1.7036 -2.2985 18 6 5.4854 -2.7559 -2.7491 19 6 5.8510 -2.8351 -4.0797 20 6 6.7552 -3.7973 -4.4924 21 17 7.2204 -3.8920 -6.1622 22 6 7.2846 -4.6880 -3.5751 23 6 6.9146 -4.6124 -2.2459 24 6 6.0149 -3.6460 -1.8321 25 17 5.5497 -3.5513 -0.1623 26 1 2.9718 -1.0195 0.1224 27 1 2.9710 0.6170 0.8224 28 1 2.7539 1.5885 -1.4487 29 1 2.7547 -0.0481 -2.1487 30 1 4.7246 2.2326 -0.0561 31 1 6.2668 1.4156 -0.4057 32 1 7.1426 4.9927 -0.3600 33 1 3.8784 -2.1072 -1.5032 34 1 3.8786 -1.4072 -3.1397 35 1 5.4340 -2.1432 -4.7965 36 1 7.9865 -5.4425 -3.8982 37 1 7.3275 -5.3078 -1.5301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065591062.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:03 Heat of formation + Delta-G solvation = -2.132163 kcal Electronic energy + Delta-G solvation = -24108.515081 eV Core-core repulsion = 20323.546316 eV Total energy + Delta-G solvation = -3784.968765 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.049 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.08121 -38.85407 -36.92507 -36.82051 -36.28716 -35.26119 -33.24020 -32.64204 -30.86382 -30.69981 -28.54377 -26.66043 -24.04784 -23.23120 -22.93472 -21.65535 -18.65845 -17.67466 -17.27833 -16.63419 -16.48493 -16.24639 -15.95974 -15.41748 -14.74480 -14.48731 -14.33845 -14.11734 -13.95786 -13.57424 -13.32740 -13.00138 -12.64537 -12.47644 -12.44550 -12.30369 -12.13834 -12.08699 -11.78455 -11.53976 -11.28674 -11.13462 -11.05389 -11.00526 -10.86308 -10.83170 -10.60747 -10.20755 -9.74556 -9.34125 -8.94771 -8.63598 -8.47936 -7.87628 -6.09861 -4.14604 0.81707 1.00724 1.86181 2.09403 2.71395 2.79996 3.22630 3.27262 3.29432 3.34384 3.37800 3.66461 4.19304 4.38923 4.42482 4.52250 4.87319 4.92378 4.99468 5.09602 5.11823 5.17887 5.25360 5.28404 5.47109 5.49831 5.64322 5.80722 5.81316 5.94791 6.05292 6.08917 6.39844 6.90805 7.34261 7.40312 7.56074 7.85735 8.15599 8.21742 8.80690 8.95089 9.50950 10.98223 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.008043 B = 0.004185 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.381039 B = 6688.832784 C = 8724.350234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.217 3.783 3 C -0.052 4.052 4 C 0.116 3.884 5 N -0.596 5.596 6 C 0.246 3.754 7 C -0.529 4.529 8 H 0.057 0.943 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.513 3.487 16 O -0.520 6.520 17 C -0.116 4.116 18 C -0.034 4.034 19 C -0.086 4.086 20 C -0.029 4.029 21 Cl -0.067 7.067 22 C -0.104 4.104 23 C -0.098 4.098 24 C -0.016 4.016 25 Cl -0.058 7.058 26 H 0.105 0.895 27 H 0.118 0.882 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.091 -18.173 -3.550 18.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.122 5.122 2 C -0.101 4.101 3 C -0.093 4.093 4 C -0.010 4.010 5 N -0.328 5.328 6 C 0.128 3.872 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.532 5.532 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.202 1.202 15 C 0.299 3.701 16 O -0.396 6.396 17 C -0.156 4.156 18 C -0.035 4.035 19 C -0.105 4.105 20 C -0.056 4.056 21 Cl -0.038 7.038 22 C -0.123 4.123 23 C -0.117 4.117 24 C -0.043 4.043 25 Cl -0.029 7.029 26 H 0.124 0.876 27 H 0.136 0.864 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.012 -17.994 -3.425 18.751 hybrid contribution 0.642 0.829 -0.715 1.269 sum -3.370 -17.165 -4.140 17.975 Atomic orbital electron populations 1.81207 1.13027 1.09229 1.08752 1.29091 0.95079 0.92843 0.93082 1.19915 0.81382 1.05087 1.02947 1.21326 0.82266 1.03323 0.94098 1.48180 1.04779 1.17489 1.62328 1.19347 0.92625 0.80573 0.94694 1.21364 1.36912 1.03191 0.95325 0.92448 1.24901 0.95282 0.97955 0.95738 1.69907 1.38229 1.24944 1.20112 0.86598 0.78401 0.80258 0.82413 1.20245 1.21194 1.20181 1.19952 0.88063 0.83234 0.78832 1.90727 1.13488 1.81138 1.54224 1.20936 0.97586 0.93661 1.03400 1.19138 0.97590 0.94846 0.91941 1.20875 0.96897 0.97382 0.95329 1.20891 0.99760 0.98938 0.86001 1.98377 1.91358 1.97841 1.16229 1.20939 1.00374 0.99140 0.91805 1.20931 0.96809 0.98162 0.95792 1.20809 0.99562 0.98180 0.85777 1.98374 1.91001 1.97836 1.15718 0.87647 0.86420 0.88615 0.90624 0.94716 0.93526 0.92612 0.87765 0.87662 0.84039 0.84208 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.40 18.54 42.15 0.78 -5.61 16 2 C 0.22 2.55 15.43 -20.76 -0.32 2.23 16 3 C -0.05 -0.53 6.03 -29.51 -0.18 -0.70 16 4 C 0.12 1.47 5.17 -4.05 -0.02 1.45 16 5 N -0.60 -10.47 2.46 -175.06 -0.43 -10.90 16 6 C 0.25 5.70 5.16 -5.19 -0.03 5.67 16 7 C -0.53 -13.86 9.39 -34.44 -0.32 -14.19 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 11 Si 0.90 21.05 29.54 -169.99 -5.02 16.03 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.51 9.01 7.67 -10.98 -0.08 8.93 16 16 O -0.52 -11.65 15.61 5.56 0.09 -11.56 16 17 C -0.12 -1.43 3.90 -29.03 -0.11 -1.55 16 18 C -0.03 -0.43 4.38 -104.59 -0.46 -0.89 16 19 C -0.09 -1.06 9.46 -39.55 -0.37 -1.44 16 20 C -0.03 -0.34 6.32 -39.49 -0.25 -0.59 16 21 Cl -0.07 -0.72 28.96 -51.86 -1.50 -2.22 16 22 C -0.10 -1.06 9.83 -39.55 -0.39 -1.45 16 23 C -0.10 -1.03 9.83 -39.55 -0.39 -1.42 16 24 C -0.02 -0.20 6.31 -39.50 -0.25 -0.45 16 25 Cl -0.06 -0.70 27.40 -51.86 -1.42 -2.12 16 26 H 0.11 0.89 7.22 -51.93 -0.38 0.51 16 27 H 0.12 1.20 8.14 -51.93 -0.42 0.77 16 28 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 29 H 0.08 0.76 6.44 -51.93 -0.33 0.43 16 30 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.05 1.25 7.42 -51.93 -0.39 0.86 16 32 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.10 1.06 6.17 -51.93 -0.32 0.74 16 34 H 0.11 1.06 7.31 -51.93 -0.38 0.68 16 35 H 0.14 1.60 8.06 -52.49 -0.42 1.17 16 36 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 37 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 LS Contribution 360.57 15.07 5.43 5.43 Total: -1.00 -32.43 360.57 -8.48 -40.91 By element: Atomic # 1 Polarization: 1.21 SS G_CDS: -3.87 Total: -2.66 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -3.27 Total: -2.76 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 1.09 Total: -41.06 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.09 Total: -11.56 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -2.92 Total: -4.34 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.43 -8.48 -40.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065591062.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.777 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds