Wall clock time and date at job start Tue Mar 31 2020 05:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.53001 * 109.47132 * 113.16029 * 3 2 1 5 5 N 1.46490 * 109.47305 * 179.97438 * 4 3 2 6 6 C 1.46497 * 120.00322 * 270.00146 * 5 4 3 7 7 C 1.50707 * 109.47162 * 269.99844 * 6 5 4 8 8 H 1.07998 * 119.99576 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99930 * 359.97438 * 9 7 6 11 11 Si 1.86796 * 119.99982 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47235 * 59.99855 * 11 9 7 13 13 H 1.48500 * 109.47168 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47142 * 299.99797 * 11 9 7 15 15 C 1.34780 * 120.00111 * 89.99580 * 5 4 3 16 16 O 1.21280 * 120.00423 * 179.97438 * 15 5 4 17 17 C 1.50701 * 119.99795 * 0.02562 * 15 5 4 18 18 C 1.50703 * 109.47064 * 179.97438 * 17 15 5 19 19 C 1.38221 * 119.99573 * 264.72607 * 18 17 15 20 20 C 1.38337 * 119.99485 * 179.72556 * 19 18 17 21 21 Cl 1.73600 * 120.00021 * 180.29706 * 20 19 18 22 22 C 1.38378 * 120.00067 * 0.56664 * 20 19 18 23 23 C 1.38176 * 119.99891 * 359.70865 * 22 20 19 24 24 C 1.38329 * 120.00284 * 84.99764 * 18 17 15 25 25 Cl 1.73601 * 119.99884 * 0.02562 * 24 18 17 26 26 H 1.09001 * 109.46962 * 353.15948 * 3 2 1 27 27 H 1.08996 * 109.46635 * 233.15718 * 3 2 1 28 28 H 1.09006 * 109.47320 * 59.99615 * 4 3 2 29 29 H 1.09002 * 109.47139 * 299.99841 * 4 3 2 30 30 H 1.09000 * 109.47018 * 29.99405 * 6 5 4 31 31 H 1.09000 * 109.47828 * 149.99700 * 6 5 4 32 32 H 0.97001 * 119.99961 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.47060 * 299.99722 * 17 15 5 34 34 H 1.09001 * 109.47380 * 59.99809 * 17 15 5 35 35 H 1.07997 * 120.00398 * 359.97438 * 19 18 17 36 36 H 1.08004 * 120.00266 * 179.68161 * 22 20 19 37 37 H 1.08003 * 119.99801 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1178 0.5682 -1.3263 5 7 4.5827 0.5695 -1.3261 6 6 5.3142 1.7366 -0.8271 7 6 5.5648 2.6954 -1.9625 8 1 5.2145 2.4588 -2.9563 9 6 6.2411 3.8746 -1.7324 10 7 6.6671 4.1629 -0.5220 11 14 6.5511 5.0635 -3.1395 12 1 5.2530 5.5005 -3.7134 13 1 7.2916 6.2470 -2.6335 14 1 7.3545 4.3883 -4.1901 15 6 5.2576 -0.5032 -1.7848 16 8 6.4704 -0.5021 -1.7851 17 6 4.5051 -1.7036 -2.2985 18 6 5.4854 -2.7559 -2.7491 19 6 5.8510 -2.8351 -4.0797 20 6 6.7552 -3.7973 -4.4924 21 17 7.2204 -3.8920 -6.1622 22 6 7.2846 -4.6880 -3.5751 23 6 6.9146 -4.6124 -2.2459 24 6 6.0149 -3.6460 -1.8321 25 17 5.5497 -3.5513 -0.1623 26 1 2.9718 -1.0195 0.1224 27 1 2.9710 0.6170 0.8224 28 1 2.7539 1.5885 -1.4487 29 1 2.7547 -0.0481 -2.1487 30 1 4.7246 2.2326 -0.0561 31 1 6.2668 1.4156 -0.4057 32 1 7.1426 4.9927 -0.3600 33 1 3.8784 -2.1072 -1.5032 34 1 3.8786 -1.4072 -3.1397 35 1 5.4340 -2.1432 -4.7965 36 1 7.9865 -5.4425 -3.8982 37 1 7.3275 -5.3078 -1.5301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065591062.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:03 Heat of formation + Delta-G solvation = -19.294467 kcal Electronic energy + Delta-G solvation = -24109.259294 eV Core-core repulsion = 20323.546316 eV Total energy + Delta-G solvation = -3785.712978 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 340.049 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.17983 -39.99290 -37.97092 -37.73933 -37.16873 -36.63249 -34.90376 -33.88280 -32.13050 -31.56295 -29.89384 -28.13307 -25.29457 -24.76224 -23.83869 -22.73355 -19.97656 -18.80936 -18.34694 -18.16498 -17.87022 -17.18037 -17.08503 -16.67707 -16.14629 -15.75133 -15.63487 -15.06117 -14.99353 -14.60159 -14.35516 -14.30795 -14.07155 -13.60345 -13.52340 -13.42296 -13.29592 -13.17321 -12.94620 -12.89821 -12.70120 -12.55083 -12.48075 -12.14230 -11.99648 -11.90365 -11.82209 -11.70569 -11.65638 -10.64408 -10.55656 -9.96417 -9.52947 -9.43518 -8.15239 -6.27013 -0.06351 0.14694 0.99376 1.21321 1.41467 1.44121 1.50545 1.70264 1.85256 1.94277 2.24139 2.43295 2.56726 3.14916 3.18882 3.48693 3.69633 3.87697 4.04081 4.09890 4.14462 4.17494 4.31515 4.40190 4.60236 4.61715 4.80344 4.85851 4.96777 5.07755 5.11725 5.16610 5.19797 5.38419 5.57167 5.64306 5.91094 6.16219 6.61580 6.77177 6.85079 7.37551 7.55668 8.91209 Molecular weight = 340.05amu Principal moments of inertia in cm(-1) A = 0.008043 B = 0.004185 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.381039 B = 6688.832784 C = 8724.350234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C 0.246 3.754 3 C -0.040 4.040 4 C 0.111 3.889 5 N -0.597 5.597 6 C 0.262 3.738 7 C -0.537 4.537 8 H 0.055 0.945 9 C 0.012 3.988 10 N -0.926 5.926 11 Si 0.954 3.046 12 H -0.263 1.263 13 H -0.284 1.284 14 H -0.280 1.280 15 C 0.511 3.489 16 O -0.576 6.576 17 C -0.105 4.105 18 C -0.053 4.053 19 C -0.098 4.098 20 C -0.040 4.040 21 Cl -0.063 7.063 22 C -0.099 4.099 23 C -0.099 4.099 24 C -0.031 4.031 25 Cl -0.060 7.060 26 H 0.131 0.869 27 H 0.120 0.880 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.033 0.967 31 H 0.003 0.997 32 H 0.264 0.736 33 H 0.130 0.870 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.165 0.835 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.891 -19.492 -4.528 20.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.165 5.165 2 C -0.071 4.071 3 C -0.081 4.081 4 C -0.013 4.013 5 N -0.328 5.328 6 C 0.141 3.859 7 C -0.576 4.576 8 H 0.073 0.927 9 C -0.187 4.187 10 N -0.566 5.566 11 Si 0.780 3.220 12 H -0.187 1.187 13 H -0.209 1.209 14 H -0.206 1.206 15 C 0.299 3.701 16 O -0.455 6.455 17 C -0.144 4.144 18 C -0.054 4.054 19 C -0.117 4.117 20 C -0.067 4.067 21 Cl -0.034 7.034 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.057 4.057 25 Cl -0.031 7.031 26 H 0.149 0.851 27 H 0.138 0.862 28 H 0.104 0.896 29 H 0.128 0.872 30 H 0.051 0.949 31 H 0.021 0.979 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.164 0.836 36 H 0.183 0.817 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -4.869 -19.330 -4.412 20.416 hybrid contribution 0.939 1.182 -0.417 1.566 sum -3.930 -18.147 -4.829 19.186 Atomic orbital electron populations 1.81251 1.14325 1.10853 1.10100 1.29099 0.94874 0.91393 0.91754 1.19843 0.80235 1.06491 1.01552 1.21560 0.79130 1.03952 0.96699 1.48044 1.06673 1.16075 1.62018 1.18773 0.91435 0.81932 0.93774 1.21726 1.36260 1.03678 0.95937 0.92687 1.25690 0.95329 0.99807 0.97874 1.70018 1.39247 1.25470 1.21888 0.85669 0.78678 0.78207 0.79471 1.18750 1.20936 1.20561 1.20800 0.87679 0.84098 0.77505 1.90699 1.16182 1.82305 1.56326 1.20919 0.97379 0.91088 1.05002 1.19243 0.98471 0.95369 0.92343 1.21031 0.97365 0.97869 0.95449 1.21061 0.99887 0.99208 0.86497 1.98376 1.91289 1.97827 1.15956 1.21268 1.00045 0.99042 0.91427 1.21252 0.96080 0.97996 0.96444 1.21044 1.00187 0.98801 0.85717 1.98367 1.91050 1.97878 1.15792 0.85075 0.86222 0.89576 0.87216 0.94910 0.97870 0.92678 0.85227 0.84843 0.83571 0.81699 0.81784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.24 18.54 20.01 0.37 -12.86 16 2 C 0.25 5.23 15.43 89.44 1.38 6.61 16 3 C -0.04 -0.72 6.03 28.79 0.17 -0.54 16 4 C 0.11 2.58 5.17 86.38 0.45 3.03 16 5 N -0.60 -20.59 2.46 -826.16 -2.03 -22.62 16 6 C 0.26 12.39 5.16 85.64 0.44 12.83 16 7 C -0.54 -28.45 9.39 25.60 0.24 -28.21 16 8 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 9 C 0.01 0.66 5.46 84.65 0.46 1.12 16 10 N -0.93 -53.44 13.29 21.45 0.28 -53.16 16 11 Si 0.95 43.27 29.54 68.60 2.03 45.30 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 14 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 15 C 0.51 17.54 7.67 87.66 0.67 18.22 16 16 O -0.58 -26.20 15.61 -3.03 -0.05 -26.25 16 17 C -0.10 -2.35 3.90 29.10 0.11 -2.24 16 18 C -0.05 -1.28 4.38 -19.85 -0.09 -1.37 16 19 C -0.10 -2.30 9.46 22.29 0.21 -2.09 16 20 C -0.04 -0.86 6.32 22.33 0.14 -0.71 16 21 Cl -0.06 -1.28 28.96 -2.72 -0.08 -1.35 16 22 C -0.10 -1.82 9.83 22.29 0.22 -1.60 16 23 C -0.10 -1.89 9.83 22.29 0.22 -1.67 16 24 C -0.03 -0.71 6.31 22.32 0.14 -0.57 16 25 Cl -0.06 -1.34 27.40 -2.72 -0.07 -1.41 16 26 H 0.13 1.76 7.22 -2.39 -0.02 1.74 16 27 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.09 2.21 8.07 -2.38 -0.02 2.19 16 29 H 0.11 1.83 6.44 -2.39 -0.02 1.81 16 30 H 0.03 1.55 8.07 -2.39 -0.02 1.53 16 31 H 0.00 0.18 7.42 -2.39 -0.02 0.16 16 32 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.13 2.20 6.17 -2.39 -0.01 2.19 16 34 H 0.13 2.23 7.31 -2.39 -0.02 2.21 16 35 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 37 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -72.38 360.57 6.34 -66.04 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.12 Total: 3.50 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: 4.77 Total: 2.81 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -1.37 Total: -88.64 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.05 Total: -26.25 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 17 Polarization: -2.61 SS G_CDS: -0.15 Total: -2.77 kcal Total: -72.38 6.34 -66.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065591062.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.743 kcal (2) G-P(sol) polarization free energy of solvation -72.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds