Wall clock time and date at job start Tue Mar 31 2020 05:20:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47303 * 2 1 4 4 C 1.50692 * 109.47868 * 120.00587 * 2 1 3 5 5 H 1.08003 * 120.00395 * 114.45303 * 4 2 1 6 6 C 1.37878 * 119.99788 * 294.45946 * 4 2 1 7 7 N 1.31516 * 120.00216 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00153 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.47164 * 89.99875 * 8 6 4 10 10 H 1.48501 * 109.47562 * 210.00369 * 8 6 4 11 11 H 1.48503 * 109.47120 * 330.00357 * 8 6 4 12 12 N 1.46906 * 109.46638 * 240.00632 * 2 1 3 13 13 C 1.46899 * 111.00008 * 300.13018 * 12 2 1 14 14 C 1.53243 * 109.33864 * 187.25820 * 13 12 2 15 15 N 1.47079 * 108.51858 * 306.16625 * 14 13 12 16 16 C 1.34769 * 120.88152 * 231.18554 * 15 14 13 17 17 O 1.21583 * 120.00096 * 5.80312 * 16 15 14 18 18 C 1.47627 * 120.00263 * 185.79769 * 16 15 14 19 19 C 1.39701 * 120.14990 * 53.59785 * 18 16 15 20 20 C 1.37797 * 119.89230 * 180.02562 * 19 18 16 21 21 C 1.38611 * 120.20532 * 359.97438 * 20 19 18 22 22 Cl 1.73601 * 119.84706 * 179.97438 * 21 20 19 23 23 C 1.38364 * 120.31244 * 359.97438 * 21 20 19 24 24 C 1.38258 * 120.10062 * 0.02596 * 23 21 20 25 25 F 1.35097 * 120.10036 * 179.97438 * 24 23 21 26 26 C 1.47076 * 118.23566 * 51.46262 * 15 14 13 27 27 C 1.46897 * 111.00231 * 64.43622 * 12 2 1 28 28 H 1.08997 * 109.47657 * 59.99508 * 1 2 3 29 29 H 1.09006 * 109.47197 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47138 * 299.99391 * 1 2 3 31 31 H 0.96995 * 120.00111 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.49309 * 67.29332 * 13 12 2 33 33 H 1.09001 * 109.51036 * 307.22601 * 13 12 2 34 34 H 1.09002 * 109.62396 * 186.45734 * 14 13 12 35 35 H 1.08996 * 109.79074 * 65.97678 * 14 13 12 36 36 H 1.07999 * 120.05207 * 0.04659 * 19 18 16 37 37 H 1.08000 * 119.89824 * 180.25199 * 20 19 18 38 38 H 1.07999 * 119.94481 * 179.97438 * 23 21 20 39 39 H 1.09001 * 109.63172 * 68.25278 * 26 15 14 40 40 H 1.09003 * 109.62824 * 188.82665 * 26 15 14 41 41 H 1.09005 * 109.48954 * 292.70483 * 27 12 2 42 42 H 1.08994 * 109.49410 * 52.75805 * 27 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.5775 -1.6378 1.1336 6 6 1.7962 -0.1767 2.4794 7 7 2.2343 -0.7969 3.5532 8 14 0.8539 1.4275 2.6466 9 1 -0.5976 1.1386 2.7688 10 1 1.3183 2.1506 3.8577 11 1 1.0918 2.2688 1.4462 12 7 2.0195 -0.6924 -1.1996 13 6 1.5459 -2.0825 -1.2352 14 6 2.2208 -2.8189 -2.3973 15 7 1.9926 -2.0524 -3.6316 16 6 1.5007 -2.6489 -4.7354 17 8 1.1405 -3.8093 -4.6900 18 6 1.3991 -1.8935 -5.9997 19 6 2.5206 -1.2439 -6.5210 20 6 2.4196 -0.5399 -7.7013 21 6 1.2089 -0.4747 -8.3730 22 17 1.0920 0.4154 -9.8588 23 6 0.0930 -1.1158 -7.8649 24 6 0.1799 -1.8258 -6.6817 25 9 -0.9098 -2.4514 -6.1854 26 6 2.3212 -0.6188 -3.6312 27 6 1.6370 0.0323 -2.4188 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 2.0684 -0.4212 4.4319 32 1 0.4650 -2.0950 -1.3753 33 1 1.7968 -2.5767 -0.2967 34 1 1.7893 -3.8147 -2.4996 35 1 3.2914 -2.9013 -2.2100 36 1 3.4653 -1.2937 -6.0000 37 1 3.2876 -0.0410 -8.1065 38 1 -0.8475 -1.0608 -8.3930 39 1 3.4013 -0.4907 -3.5585 40 1 1.9563 -0.1592 -4.5498 41 1 0.5548 -0.0096 -2.5424 42 1 1.9539 1.0721 -2.3383 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065611961.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:01 Heat of formation + Delta-G solvation = -34.715211 kcal Electronic energy + Delta-G solvation = -27567.415798 eV Core-core repulsion = 23488.530845 eV Total energy + Delta-G solvation = -4078.884953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.29101 -40.59544 -39.08476 -37.93653 -36.93004 -35.17320 -32.58663 -31.96910 -31.16951 -30.63882 -29.92405 -26.44782 -25.29745 -24.34297 -23.66204 -23.01802 -21.68974 -20.26119 -19.02371 -18.06246 -17.48865 -17.10988 -16.75753 -16.33825 -15.87566 -15.73431 -15.21825 -15.00516 -14.72859 -14.55801 -14.21004 -13.95665 -13.79374 -13.71521 -13.62112 -13.07723 -12.80474 -12.75095 -12.41152 -12.13859 -12.07773 -11.83894 -11.61483 -11.54833 -11.39648 -11.19475 -10.95984 -10.69707 -10.42120 -10.10931 -9.94430 -9.68501 -9.52054 -9.20049 -9.10445 -8.65989 -8.63216 -7.49262 -6.12926 -4.12156 0.19680 0.55310 1.45662 2.38766 2.76774 3.04926 3.21499 3.30706 3.32963 3.69632 4.10221 4.14654 4.33914 4.39271 4.54749 4.58865 4.89553 5.04401 5.15902 5.18681 5.26580 5.36481 5.38972 5.49102 5.53224 5.55533 5.68345 5.81607 5.88340 6.00266 6.08693 6.16165 6.23349 6.26694 6.42259 6.51904 6.59594 6.80912 7.10155 7.31310 7.51418 7.80966 7.93213 8.00260 8.55731 8.92213 9.48389 10.99741 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.019514 B = 0.002725 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.553059 B =10272.800713 C =10793.013563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.181 3.819 3 H 0.043 0.957 4 C -0.506 4.506 5 H 0.083 0.917 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.880 3.120 9 H -0.279 1.279 10 H -0.293 1.293 11 H -0.266 1.266 12 N -0.518 5.518 13 C 0.046 3.954 14 C 0.115 3.885 15 N -0.597 5.597 16 C 0.558 3.442 17 O -0.528 6.528 18 C -0.152 4.152 19 C -0.046 4.046 20 C -0.124 4.124 21 C 0.007 3.993 22 Cl -0.052 7.052 23 C -0.152 4.152 24 C 0.159 3.841 25 F -0.116 7.116 26 C 0.109 3.891 27 C 0.035 3.965 28 H 0.026 0.974 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.264 0.736 32 H 0.031 0.969 33 H 0.106 0.894 34 H 0.091 0.909 35 H 0.078 0.922 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.153 0.847 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 2.848 -25.042 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.074 3.926 3 H 0.061 0.939 4 C -0.544 4.544 5 H 0.101 0.899 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.710 3.290 9 H -0.206 1.206 10 H -0.221 1.221 11 H -0.191 1.191 12 N -0.242 5.242 13 C -0.082 4.082 14 C -0.007 4.007 15 N -0.330 5.330 16 C 0.344 3.656 17 O -0.405 6.405 18 C -0.156 4.156 19 C -0.065 4.065 20 C -0.143 4.143 21 C -0.020 4.020 22 Cl -0.023 7.023 23 C -0.172 4.172 24 C 0.139 3.861 25 F -0.094 7.094 26 C -0.014 4.014 27 C -0.094 4.094 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.049 0.951 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.170 0.830 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.077 2.272 -24.873 24.976 hybrid contribution -1.766 1.015 0.186 2.046 sum -1.843 3.287 -24.686 24.973 Atomic orbital electron populations 1.22792 1.01625 1.00985 0.98980 1.19800 0.88826 0.95388 0.88595 0.93894 1.20918 1.35654 1.09809 0.87976 0.89902 1.24895 0.95406 0.96878 0.95814 1.69872 1.46267 1.39362 0.98064 0.86938 0.80023 0.84587 0.77452 1.20625 1.22059 1.19135 1.62154 1.59247 1.01423 1.01391 1.22433 0.96574 0.90520 0.98703 1.21960 1.01434 0.95498 0.81795 1.48166 1.62614 1.10519 1.11708 1.17954 0.78107 0.86504 0.83006 1.90824 1.48319 1.16797 1.84601 1.20181 0.94071 1.03179 0.98150 1.21191 0.97850 0.92826 0.94599 1.21069 0.96936 1.00972 0.95289 1.20791 0.94653 0.96737 0.89831 1.98407 1.98397 1.73451 1.32014 1.20934 1.00116 1.00111 0.95998 1.17374 0.82810 0.93649 0.92307 1.91604 1.51561 1.79491 1.86782 1.22138 1.01030 0.79459 0.98799 1.22526 0.97545 0.98442 0.90920 0.95460 0.92756 0.93496 0.92554 0.95102 0.87568 0.89109 0.90366 0.83133 0.83392 0.82974 0.90078 0.90163 0.94902 0.89983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.87 8.09 37.15 0.30 -3.57 16 2 C 0.18 4.01 1.93 -68.87 -0.13 3.87 16 3 H 0.04 0.99 6.74 -51.93 -0.35 0.64 16 4 C -0.51 -13.34 8.48 -34.44 -0.29 -13.63 16 5 H 0.08 2.37 6.75 -52.48 -0.35 2.01 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -26.53 13.96 55.43 0.77 -25.76 16 8 Si 0.88 21.03 24.67 -169.99 -4.19 16.83 16 9 H -0.28 -6.60 6.88 56.52 0.39 -6.21 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 11 H -0.27 -6.04 6.39 56.52 0.36 -5.68 16 12 N -0.52 -9.73 4.61 -227.44 -1.05 -10.77 16 13 C 0.05 0.84 4.79 -3.70 -0.02 0.82 16 14 C 0.11 1.77 6.61 -3.60 -0.02 1.74 16 15 N -0.60 -8.39 3.00 -173.38 -0.52 -8.91 16 16 C 0.56 8.20 6.90 -12.43 -0.09 8.12 16 17 O -0.53 -9.67 16.29 5.29 0.09 -9.58 16 18 C -0.15 -1.74 4.62 -104.91 -0.48 -2.22 16 19 C -0.05 -0.37 7.81 -39.20 -0.31 -0.68 16 20 C -0.12 -0.83 9.81 -39.61 -0.39 -1.22 16 21 C 0.01 0.05 6.32 -39.40 -0.25 -0.20 16 22 Cl -0.05 -0.36 28.95 -51.86 -1.50 -1.86 16 23 C -0.15 -1.32 9.79 -39.53 -0.39 -1.71 16 24 C 0.16 1.82 7.27 -38.97 -0.28 1.54 16 25 F -0.12 -1.60 16.64 2.25 0.04 -1.56 16 26 C 0.11 1.30 5.70 -3.37 -0.02 1.28 16 27 C 0.04 0.53 5.14 -3.46 -0.02 0.51 16 28 H 0.03 0.50 6.67 -51.93 -0.35 0.15 16 29 H 0.05 1.14 6.57 -51.93 -0.34 0.80 16 30 H 0.05 1.03 4.02 -51.93 -0.21 0.82 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.03 0.58 6.72 -51.93 -0.35 0.23 16 33 H 0.11 2.14 6.17 -51.93 -0.32 1.82 16 34 H 0.09 1.43 7.04 -51.93 -0.37 1.07 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.15 0.96 7.73 -52.49 -0.41 0.55 16 37 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 0.78 5.53 -51.93 -0.29 0.49 16 41 H 0.03 0.52 6.80 -51.93 -0.35 0.17 16 42 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -31.23 346.73 -8.61 -39.83 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.98 Total: 0.00 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -2.48 Total: -3.46 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: -0.80 Total: -45.44 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.09 Total: -9.58 kcal Atomic # 9 Polarization: -1.60 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.19 Total: 16.83 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.23 -8.61 -39.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065611961.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.118 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds