Wall clock time and date at job start Tue Mar 31 2020 06:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 114.00387 * 2 1 4 4 C 1.52995 * 109.47617 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46824 * 64.99777 * 4 3 2 6 6 C 1.46499 * 119.99936 * 85.00335 * 5 4 3 7 7 C 1.50704 * 109.46882 * 84.99554 * 6 5 4 8 8 H 1.07992 * 120.00253 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99387 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00317 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99593 * 180.02562 * 9 7 6 12 12 H 1.48495 * 109.47347 * 59.99966 * 11 9 7 13 13 H 1.48498 * 109.47065 * 180.02562 * 11 9 7 14 14 H 1.48507 * 109.47381 * 299.99760 * 11 9 7 15 15 S 1.65597 * 120.00079 * 264.72374 * 5 4 3 16 16 O 1.42095 * 106.40469 * 203.54076 * 15 5 4 17 17 O 1.42098 * 106.40441 * 336.46418 * 15 5 4 18 18 C 1.76207 * 107.21624 * 90.00391 * 15 5 4 19 19 C 1.38404 * 119.82443 * 269.72477 * 18 15 5 20 20 C 1.37881 * 120.17275 * 179.76613 * 19 18 15 21 21 C 1.39852 * 119.82310 * 0.52784 * 20 19 18 22 22 C 1.47167 * 120.17052 * 179.70048 * 21 20 19 23 23 C 1.50699 * 120.00085 * 0.02621 * 22 21 20 24 24 O 1.21254 * 119.99766 * 180.02562 * 22 21 20 25 25 C 1.39854 * 119.65812 * 359.72935 * 21 20 19 26 26 C 1.37884 * 119.82431 * 359.97438 * 25 21 20 27 27 H 1.09002 * 109.46604 * 300.00035 * 1 2 3 28 28 H 1.08996 * 109.46789 * 59.99787 * 1 2 3 29 29 H 1.08989 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46916 * 59.99866 * 3 2 1 31 31 H 1.08999 * 109.46972 * 300.00402 * 3 2 1 32 32 H 1.08999 * 109.46886 * 305.00420 * 4 3 2 33 33 H 1.08999 * 109.47559 * 184.99651 * 4 3 2 34 34 H 1.08991 * 109.47463 * 204.99792 * 6 5 4 35 35 H 1.09000 * 109.46878 * 325.00020 * 6 5 4 36 36 H 0.97005 * 120.00079 * 179.97438 * 10 9 7 37 37 H 1.08010 * 119.91046 * 0.02562 * 19 18 15 38 38 H 1.08003 * 120.09256 * 180.23177 * 20 19 18 39 39 H 1.08994 * 109.47074 * 0.02562 * 23 22 21 40 40 H 1.08999 * 109.46730 * 119.99878 * 23 22 21 41 41 H 1.08998 * 109.46797 * 239.99497 * 23 22 21 42 42 H 1.07997 * 120.08936 * 179.97438 * 25 21 20 43 43 H 1.07997 * 119.91728 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1808 1.3890 -2.4462 7 6 5.5682 1.9769 -2.4180 8 1 6.2308 1.7579 -1.5939 9 6 5.9913 2.7945 -3.4445 10 7 5.1844 3.0607 -4.4484 11 14 7.7111 3.5227 -3.4101 12 1 8.7125 2.4265 -3.3885 13 1 7.9186 4.3596 -4.6191 14 1 7.8693 4.3616 -2.1949 15 16 4.2479 -1.0678 -1.3173 16 8 5.1480 -1.2821 -2.3957 17 8 4.5181 -1.4825 0.0147 18 6 2.7286 -1.8322 -1.7780 19 6 1.8350 -2.2322 -0.7997 20 6 0.6419 -2.8267 -1.1522 21 6 0.3407 -3.0350 -2.5020 22 6 -0.9276 -3.6748 -2.8866 23 6 -1.9060 -4.1068 -1.8249 24 8 -1.1853 -3.8544 -4.0577 25 6 1.2513 -2.6328 -3.4843 26 6 2.4375 -2.0342 -3.1159 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6887 1.8464 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.8515 0.5682 0.8409 33 1 3.9786 2.1765 0.0889 34 1 4.0654 0.7728 -3.3378 35 1 3.4456 2.1934 -2.4627 36 1 5.4820 3.6362 -5.1704 37 1 2.0710 -2.0745 0.2424 38 1 -0.0562 -3.1349 -0.3879 39 1 -1.5047 -3.8647 -0.8409 40 1 -2.8523 -3.5855 -1.9692 41 1 -2.0689 -5.1821 -1.8969 42 1 1.0260 -2.7907 -4.5286 43 1 3.1416 -1.7226 -3.8732 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000065624597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:42 Heat of formation + Delta-G solvation = -115.920341 kcal Electronic energy + Delta-G solvation = -29027.577146 eV Core-core repulsion = 24972.956224 eV Total energy + Delta-G solvation = -4054.620922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12363 -38.36771 -37.86103 -36.59989 -35.54893 -35.16345 -32.59299 -32.34060 -31.11610 -29.63066 -29.49846 -26.81168 -26.00636 -24.26069 -23.17240 -22.55226 -21.65616 -20.09625 -18.71689 -17.73699 -17.00601 -16.56641 -16.53245 -16.07492 -15.93329 -15.68279 -15.30169 -15.18124 -14.85718 -14.76599 -14.47794 -14.11735 -13.59555 -13.48283 -13.15302 -12.85039 -12.70040 -12.56451 -12.42488 -12.32024 -12.02213 -11.84790 -11.61620 -11.44744 -11.42910 -11.16577 -11.04241 -10.99494 -10.66406 -10.61402 -10.44924 -10.03442 -9.95182 -9.81062 -9.62697 -9.26767 -8.89936 -8.46775 -8.12561 -6.08990 -4.13514 0.25423 1.06494 1.37406 2.11130 3.32411 3.36674 3.40648 3.46611 3.71006 3.79272 3.96850 4.38922 4.45834 4.53869 4.70130 4.83833 4.98065 5.08077 5.20651 5.21314 5.25283 5.30606 5.37805 5.41460 5.46936 5.49795 5.52939 5.62422 5.62692 5.65614 5.81593 5.99208 6.07553 6.22893 6.24775 6.27674 6.44819 6.81796 7.14441 7.20808 7.24605 7.34772 7.54457 7.88020 8.15900 8.88774 9.52071 10.99395 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.015465 B = 0.003879 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.125330 B = 7216.507055 C = 7682.437369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.389 6.389 3 C 0.035 3.965 4 C 0.124 3.876 5 N -0.976 5.976 6 C 0.256 3.744 7 C -0.531 4.531 8 H 0.061 0.939 9 C 0.064 3.936 10 N -0.895 5.895 11 Si 0.896 3.104 12 H -0.274 1.274 13 H -0.287 1.287 14 H -0.276 1.276 15 S 2.687 3.313 16 O -0.944 6.944 17 O -0.973 6.973 18 C -0.636 4.636 19 C 0.010 3.990 20 C -0.116 4.116 21 C -0.129 4.129 22 C 0.393 3.607 23 C -0.202 4.202 24 O -0.455 6.455 25 C -0.093 4.093 26 C -0.028 4.028 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.039 0.961 35 H 0.036 0.964 36 H 0.264 0.736 37 H 0.148 0.852 38 H 0.136 0.864 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.240 -8.792 9.741 19.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.308 6.308 3 C -0.043 4.043 4 C -0.002 4.002 5 N -0.815 5.815 6 C 0.135 3.865 7 C -0.570 4.570 8 H 0.080 0.920 9 C -0.139 4.139 10 N -0.534 5.534 11 Si 0.724 3.276 12 H -0.199 1.199 13 H -0.212 1.212 14 H -0.202 1.202 15 S 2.775 3.225 16 O -0.934 6.934 17 O -0.963 6.963 18 C -0.720 4.720 19 C -0.009 4.009 20 C -0.134 4.134 21 C -0.130 4.130 22 C 0.271 3.729 23 C -0.259 4.259 24 O -0.331 6.331 25 C -0.112 4.112 26 C -0.047 4.047 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.057 0.943 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.166 0.834 38 H 0.153 0.847 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.154 0.846 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -13.521 -9.369 9.091 18.794 hybrid contribution -0.156 0.845 -0.299 0.910 sum -13.677 -8.524 8.791 18.358 Atomic orbital electron populations 1.22726 0.81878 1.02360 0.99859 1.87928 1.19345 1.28211 1.95366 1.23247 0.95569 0.84743 1.00731 1.21308 0.90732 1.01545 0.86637 1.57364 1.82150 1.23517 1.18442 1.19097 0.97092 0.90316 0.80013 1.21446 0.99123 1.29268 1.07211 0.92032 1.24918 0.97655 0.96227 0.95058 1.69907 1.36070 1.37299 1.10107 0.86582 0.84571 0.79105 0.77361 1.19912 1.21215 1.20171 1.02178 0.73852 0.72991 0.73443 1.93609 1.59485 1.84735 1.55572 1.93490 1.83771 1.81922 1.37154 1.31637 1.24948 1.14524 1.00918 1.20828 0.91120 0.89492 0.99436 1.21494 0.97588 0.99648 0.94718 1.20707 0.96352 1.01253 0.94731 1.22618 0.86006 0.74454 0.89837 1.22251 1.00043 1.04034 0.99582 1.90545 1.76083 1.44911 1.21529 1.21437 0.93111 0.96869 0.99735 1.21019 0.96044 0.92886 0.94709 0.94262 0.94226 0.90023 0.92617 0.92289 0.89292 0.87751 0.94318 0.94625 0.92596 0.83396 0.84678 0.89604 0.88692 0.88682 0.84566 0.83677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.29 101.05 1.04 1.31 16 2 O -0.39 -4.96 5.95 -35.23 -0.21 -5.17 16 3 C 0.04 0.46 6.28 37.16 0.23 0.69 16 4 C 0.12 1.97 6.07 -4.04 -0.02 1.95 16 5 N -0.98 -19.20 2.71 -115.66 -0.31 -19.52 16 6 C 0.26 6.10 5.10 -5.19 -0.03 6.07 16 7 C -0.53 -14.28 9.38 -34.44 -0.32 -14.60 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 10 N -0.90 -25.41 13.29 55.43 0.74 -24.67 16 11 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 S 2.69 52.88 5.52 -107.50 -0.59 52.28 16 16 O -0.94 -22.09 16.23 -57.17 -0.93 -23.02 16 17 O -0.97 -19.48 15.81 -57.17 -0.90 -20.38 16 18 C -0.64 -10.38 5.46 -39.46 -0.22 -10.59 16 19 C 0.01 0.14 5.97 -39.65 -0.24 -0.10 16 20 C -0.12 -1.25 7.45 -39.11 -0.29 -1.54 16 21 C -0.13 -1.58 5.87 -105.06 -0.62 -2.20 16 22 C 0.39 4.34 7.23 -30.69 -0.22 4.12 16 23 C -0.20 -1.32 10.19 36.01 0.37 -0.95 16 24 O -0.46 -6.57 17.09 5.58 0.10 -6.47 16 25 C -0.09 -1.32 9.60 -39.11 -0.38 -1.69 16 26 C -0.03 -0.44 9.50 -39.65 -0.38 -0.82 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.65 5.77 -51.93 -0.30 0.35 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 32 H 0.09 1.34 6.91 -51.93 -0.36 0.98 16 33 H 0.10 1.62 8.11 -51.93 -0.42 1.20 16 34 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 35 H 0.04 0.85 8.05 -51.93 -0.42 0.43 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.15 1.90 6.73 -52.48 -0.35 1.55 16 38 H 0.14 0.93 5.69 -52.48 -0.30 0.63 16 39 H 0.09 0.39 5.60 -51.93 -0.29 0.10 16 40 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.14 1.84 7.65 -52.49 -0.40 1.44 16 43 H 0.15 2.38 7.60 -52.49 -0.40 1.99 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -33.81 365.94 -8.50 -42.32 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.71 Total: -0.46 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: -1.17 Total: -16.68 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: 0.42 Total: -44.19 kcal Atomic # 8 Polarization: -53.10 SS G_CDS: -1.95 Total: -55.04 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 52.88 SS G_CDS: -0.59 Total: 52.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.81 -8.50 -42.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065624597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.602 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds