Wall clock time and date at job start Tue Mar 31 2020 05:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38258 * 120.00203 * 2 1 4 4 C 1.38211 * 120.00585 * 179.97438 * 3 2 1 5 5 C 1.38254 * 119.99618 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00189 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47261 * 99.27287 * 6 5 4 8 8 H 1.08994 * 109.47053 * 55.02581 * 7 6 5 9 9 C 1.52995 * 109.47298 * 175.02894 * 7 6 5 10 10 N 1.46499 * 109.47177 * 295.02754 * 7 6 5 11 11 S 1.65603 * 120.00218 * 125.63670 * 10 7 6 12 12 O 1.42098 * 106.39926 * 309.57927 * 11 10 7 13 13 O 1.42102 * 106.40168 * 176.65718 * 11 10 7 14 14 N 1.65599 * 107.21461 * 63.11873 * 11 10 7 15 15 C 1.46503 * 119.99690 * 264.37435 * 14 11 10 16 16 C 1.46500 * 120.00484 * 84.37685 * 14 11 10 17 17 C 1.50701 * 109.47404 * 94.64286 * 16 14 11 18 18 H 1.08003 * 119.99290 * 355.11831 * 17 16 14 19 19 C 1.37876 * 120.00094 * 175.11381 * 17 16 14 20 20 N 1.31510 * 120.00213 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99621 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47432 * 60.00057 * 21 19 17 23 23 H 1.48504 * 109.46883 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47487 * 299.99784 * 21 19 17 25 25 C 1.38215 * 119.99977 * 0.25855 * 5 4 3 26 26 C 1.50704 * 120.00223 * 179.72544 * 25 5 4 27 27 C 1.38213 * 120.00002 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47066 * 90.00031 * 1 2 3 29 29 H 1.08998 * 109.47675 * 210.00177 * 1 2 3 30 30 H 1.09006 * 109.47542 * 330.00662 * 1 2 3 31 31 H 1.08003 * 119.99934 * 359.97396 * 3 2 1 32 32 H 1.07998 * 120.00268 * 179.97438 * 4 3 2 33 33 H 1.09001 * 109.47336 * 339.27513 * 6 5 4 34 34 H 1.08995 * 109.47693 * 219.27424 * 6 5 4 35 35 H 1.09005 * 109.47248 * 304.79910 * 9 7 6 36 36 H 1.08997 * 109.47802 * 64.80425 * 9 7 6 37 37 H 1.09007 * 109.47179 * 184.80509 * 9 7 6 38 38 H 0.96999 * 120.00293 * 305.64136 * 10 7 6 39 39 H 1.09002 * 109.46968 * 90.00552 * 15 14 11 40 40 H 1.09003 * 109.46540 * 210.00208 * 15 14 11 41 41 H 1.08995 * 109.47075 * 329.99733 * 15 14 11 42 42 H 1.08991 * 109.47342 * 214.64883 * 16 14 11 43 43 H 1.09006 * 109.46583 * 334.64847 * 16 14 11 44 44 H 0.96993 * 120.00235 * 179.97438 * 20 19 17 45 45 H 1.08997 * 109.47284 * 92.28420 * 26 25 5 46 46 H 1.09000 * 109.47301 * 212.29084 * 26 25 5 47 47 H 1.09006 * 109.46497 * 332.28802 * 26 25 5 48 48 H 1.07998 * 120.00112 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2716 0.0001 0.0016 6 6 5.7786 0.0000 0.0016 7 6 6.2886 -0.2311 1.4255 8 1 5.8543 -1.1486 1.8224 9 6 7.8134 -0.3549 1.4072 10 7 5.9005 0.8992 2.2727 11 16 5.0592 0.6332 3.6741 12 8 3.9614 -0.2011 3.3306 13 8 4.9067 1.9010 4.2974 14 7 6.0342 -0.2627 4.6686 15 6 5.8990 -1.7210 4.7071 16 6 7.0319 0.4029 5.5099 17 6 6.4528 0.6451 6.8800 18 1 5.4184 0.4065 7.0787 19 6 7.2435 1.1710 7.8795 20 7 8.5029 1.4618 7.6373 21 14 6.5257 1.4704 9.5779 22 1 6.0395 0.1862 10.1433 23 1 7.5731 2.0374 10.4650 24 1 5.3938 2.4262 9.4756 25 6 3.5806 -1.1969 -0.0033 26 6 4.3341 -2.5020 -0.0083 27 6 2.1980 -1.1970 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8901 0.5137 31 1 1.6583 2.1327 -0.0004 32 1 4.1203 2.1327 0.0001 33 1 6.1420 0.9609 -0.3629 34 1 6.1420 -0.7960 -0.6482 35 1 8.1059 -1.1408 0.7108 36 1 8.2512 0.5920 1.0912 37 1 8.1698 -0.6041 2.4068 38 1 6.1363 1.8035 2.0130 39 1 6.5581 -2.1667 3.9621 40 1 6.1718 -2.0850 5.6977 41 1 4.8669 -1.9960 4.4905 42 1 7.9153 -0.2296 5.5954 43 1 7.3096 1.3559 5.0592 44 1 9.0591 1.8321 8.3404 45 1 4.4801 -2.8413 1.0171 46 1 3.7635 -3.2489 -0.5604 47 1 5.3037 -2.3598 -0.4856 48 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066581599.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:22 Heat of formation + Delta-G solvation = -70.268109 kcal Electronic energy + Delta-G solvation = -29203.233031 eV Core-core repulsion = 25384.143495 eV Total energy + Delta-G solvation = -3819.089536 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.76192 -36.93746 -36.34868 -35.43611 -35.04440 -33.62522 -32.41577 -32.03062 -30.24035 -28.34826 -27.75083 -27.10942 -25.02437 -24.78400 -22.26884 -22.02507 -21.48637 -19.95649 -18.99257 -17.31154 -16.61225 -16.33899 -16.20296 -15.76332 -15.39786 -14.92743 -14.73838 -14.33621 -14.20353 -13.62690 -13.59849 -13.42083 -13.26296 -13.07314 -13.05855 -12.75346 -12.54677 -12.25609 -12.14366 -12.06978 -11.91087 -11.89291 -11.58016 -11.48004 -11.31690 -11.20426 -11.13287 -11.01511 -10.85725 -10.77000 -10.70868 -10.66467 -10.46946 -9.99348 -9.75569 -9.32216 -8.58795 -8.43346 -8.23707 -8.03104 -6.05205 -4.08817 1.33479 1.47698 1.55208 3.34809 3.37967 3.43142 3.59261 3.82325 4.23212 4.46465 4.68842 4.79493 4.87549 5.00524 5.03209 5.07083 5.15919 5.25836 5.30418 5.32254 5.36713 5.50853 5.54776 5.57422 5.59419 5.65057 5.71123 5.78627 5.81466 5.82745 5.86679 5.92568 5.99742 6.21382 6.22676 6.28113 6.32147 6.41131 6.57741 6.59055 6.70302 6.79289 7.17452 7.18242 7.29748 7.47275 7.64257 7.92749 8.22685 8.93772 9.56142 11.03266 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.003607 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.073383 B = 7761.419664 C = 8439.324717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.088 4.088 3 C -0.126 4.126 4 C -0.109 4.109 5 C -0.079 4.079 6 C -0.089 4.089 7 C 0.160 3.840 8 H 0.087 0.913 9 C -0.167 4.167 10 N -1.125 6.125 11 S 2.778 3.222 12 O -0.988 6.988 13 O -0.970 6.970 14 N -0.997 5.997 15 C 0.095 3.905 16 C 0.260 3.740 17 C -0.527 4.527 18 H 0.059 0.941 19 C 0.062 3.938 20 N -0.898 5.898 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.070 4.070 26 C -0.119 4.119 27 C -0.113 4.113 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.410 0.590 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.037 0.963 43 H 0.031 0.969 44 H 0.264 0.736 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.177 -6.423 -19.501 21.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.127 4.127 5 C -0.080 4.080 6 C -0.128 4.128 7 C 0.052 3.948 8 H 0.105 0.895 9 C -0.226 4.226 10 N -0.883 5.883 11 S 2.786 3.214 12 O -0.971 6.971 13 O -0.954 6.954 14 N -0.840 5.840 15 C -0.051 4.051 16 C 0.138 3.862 17 C -0.566 4.566 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.537 5.537 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.200 1.200 25 C -0.070 4.070 26 C -0.176 4.176 27 C -0.131 4.131 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.242 0.758 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.055 0.945 43 H 0.049 0.951 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.940 -6.250 -19.154 21.309 hybrid contribution 0.226 0.593 0.959 1.150 sum -6.714 -5.657 -18.195 20.202 Atomic orbital electron populations 1.20763 0.91623 1.02755 1.01759 1.19807 0.95753 0.93289 0.99953 1.20937 0.94253 0.97345 1.01823 1.20955 0.94115 0.97369 1.00226 1.19533 0.95025 0.92718 1.00677 1.21016 0.91686 1.03193 0.96884 1.20609 0.94797 0.89062 0.90335 0.89530 1.22254 0.94958 1.02277 1.03089 1.56267 1.76740 1.14429 1.40837 1.02040 0.73514 0.73469 0.72405 1.93553 1.50074 1.69481 1.84035 1.93632 1.85413 1.42077 1.74277 1.57628 1.55363 1.15282 1.55746 1.21342 1.00674 0.80485 1.02624 1.18991 0.86404 0.91937 0.88918 1.21478 0.97439 1.42208 0.95515 0.92286 1.24924 0.94774 0.95255 0.99082 1.69904 1.06049 1.43897 1.33835 0.86587 0.78874 0.78720 0.83478 1.20159 1.21164 1.19975 1.19617 0.93606 0.94677 0.99101 1.20890 0.99884 0.94184 1.02629 1.20776 0.93495 0.97257 1.01622 0.91591 0.91683 0.91691 0.86540 0.86468 0.90603 0.89825 0.91857 0.91971 0.91312 0.75769 0.94487 0.90477 0.91597 0.94475 0.95099 0.92669 0.90754 0.91870 0.91361 0.86553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.01 36.00 0.36 -0.76 16 2 C -0.09 -1.14 5.88 -104.63 -0.62 -1.75 16 3 C -0.13 -1.66 9.70 -39.58 -0.38 -2.04 16 4 C -0.11 -1.43 9.67 -39.59 -0.38 -1.81 16 5 C -0.08 -1.01 4.86 -104.63 -0.51 -1.52 16 6 C -0.09 -0.92 4.46 -27.89 -0.12 -1.05 16 7 C 0.16 1.94 2.90 -67.93 -0.20 1.74 16 8 H 0.09 1.11 6.81 -51.93 -0.35 0.75 16 9 C -0.17 -1.76 9.52 37.16 0.35 -1.41 16 10 N -1.13 -16.77 5.15 -4.90 -0.03 -16.80 16 11 S 2.78 55.87 5.93 -107.50 -0.64 55.24 16 12 O -0.99 -20.48 16.24 -57.17 -0.93 -21.41 16 13 O -0.97 -23.92 17.32 -57.17 -0.99 -24.91 16 14 N -1.00 -20.77 3.23 -123.05 -0.40 -21.17 16 15 C 0.10 1.65 10.65 59.85 0.64 2.29 16 16 C 0.26 6.52 5.07 -5.19 -0.03 6.50 16 17 C -0.53 -15.01 9.38 -34.44 -0.32 -15.33 16 18 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 21 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 25 C -0.07 -0.89 5.88 -104.62 -0.62 -1.51 16 26 C -0.12 -1.18 8.99 36.01 0.32 -0.86 16 27 C -0.11 -1.46 9.37 -39.58 -0.37 -1.83 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 30 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 31 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.12 1.34 8.04 -52.49 -0.42 0.92 16 33 H 0.08 0.70 8.01 -51.93 -0.42 0.28 16 34 H 0.08 0.70 6.34 -51.93 -0.33 0.37 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.07 0.85 8.14 -51.92 -0.42 0.42 16 38 H 0.41 5.42 8.96 -34.47 -0.31 5.11 16 39 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 41 H 0.07 1.09 7.00 -51.93 -0.36 0.73 16 42 H 0.04 0.95 8.11 -51.93 -0.42 0.52 16 43 H 0.03 0.82 7.78 -51.93 -0.40 0.42 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.07 0.78 7.94 -51.93 -0.41 0.37 16 46 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 47 H 0.07 0.56 6.02 -51.93 -0.31 0.25 16 48 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 404.13 15.07 6.09 6.09 Total: -1.00 -35.02 404.13 -11.07 -46.09 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -7.93 Total: 3.03 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -1.97 Total: -17.69 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: 0.31 Total: -63.46 kcal Atomic # 8 Polarization: -44.41 SS G_CDS: -1.92 Total: -46.32 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 55.87 SS G_CDS: -0.64 Total: 55.24 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.02 -11.07 -46.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066581599.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.175 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds