Wall clock time and date at job start Tue Mar 31 2020 05:33:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38259 * 120.00068 * 2 1 4 4 C 1.38215 * 120.00219 * 180.02562 * 3 2 1 5 5 C 1.38257 * 119.99751 * 359.97438 * 4 3 2 6 6 C 1.50699 * 119.99933 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47287 * 264.24907 * 6 5 4 8 8 H 1.09004 * 109.47309 * 303.34765 * 7 6 5 9 9 C 1.53001 * 109.47554 * 183.34367 * 7 6 5 10 10 N 1.46502 * 109.47028 * 63.34448 * 7 6 5 11 11 S 1.65606 * 119.99901 * 216.97172 * 10 7 6 12 12 O 1.42104 * 106.40265 * 179.91600 * 11 10 7 13 13 O 1.42106 * 106.39818 * 47.00009 * 11 10 7 14 14 N 1.65594 * 107.21981 * 293.46184 * 11 10 7 15 15 C 1.46498 * 120.00231 * 85.25215 * 14 11 10 16 16 C 1.46504 * 119.99743 * 265.25060 * 14 11 10 17 17 C 1.50695 * 109.47110 * 95.46107 * 16 14 11 18 18 H 1.07994 * 120.00088 * 355.07549 * 17 16 14 19 19 C 1.37881 * 119.99946 * 175.06733 * 17 16 14 20 20 N 1.31515 * 119.99908 * 185.17417 * 19 17 16 21 21 Si 1.86800 * 119.99744 * 5.17755 * 19 17 16 22 22 H 1.48500 * 109.46953 * 90.00020 * 21 19 17 23 23 H 1.48502 * 109.46796 * 209.99841 * 21 19 17 24 24 H 1.48495 * 109.47097 * 329.99647 * 21 19 17 25 25 C 1.38210 * 120.00001 * 0.25693 * 5 4 3 26 26 C 1.50709 * 119.99908 * 179.72090 * 25 5 4 27 27 C 1.38213 * 120.00101 * 179.97438 * 2 1 3 28 28 H 1.08997 * 109.47349 * 89.99979 * 1 2 3 29 29 H 1.09003 * 109.47039 * 210.00380 * 1 2 3 30 30 H 1.08996 * 109.47028 * 329.99583 * 1 2 3 31 31 H 1.07995 * 119.99972 * 359.97438 * 3 2 1 32 32 H 1.07996 * 119.99926 * 179.97438 * 4 3 2 33 33 H 1.08995 * 109.47377 * 144.24732 * 6 5 4 34 34 H 1.09005 * 109.47247 * 24.24831 * 6 5 4 35 35 H 1.08998 * 109.46972 * 300.00128 * 9 7 6 36 36 H 1.09000 * 109.46854 * 59.99837 * 9 7 6 37 37 H 1.08997 * 109.47392 * 179.97438 * 9 7 6 38 38 H 0.96994 * 120.00538 * 36.97945 * 10 7 6 39 39 H 1.09002 * 109.46836 * 89.99963 * 15 14 11 40 40 H 1.08998 * 109.47197 * 210.00003 * 15 14 11 41 41 H 1.09003 * 109.47190 * 329.99885 * 15 14 11 42 42 H 1.09000 * 109.46877 * 215.46771 * 16 14 11 43 43 H 1.09005 * 109.47202 * 335.45756 * 16 14 11 44 44 H 0.97001 * 119.99545 * 180.02562 * 20 19 17 45 45 H 1.08999 * 109.47083 * 93.79051 * 26 25 5 46 46 H 1.09003 * 109.47175 * 213.78804 * 26 25 5 47 47 H 1.08996 * 109.47109 * 333.79248 * 26 25 5 48 48 H 1.07996 * 120.00124 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0000 -0.0005 6 6 5.7787 0.0000 -0.0017 7 6 6.2876 -0.1452 -1.4372 8 1 5.8758 -1.0527 -1.8787 9 6 7.8153 -0.2290 -1.4308 10 7 5.8656 1.0159 -2.2247 11 16 5.4210 0.8249 -3.8085 12 8 5.0692 2.1165 -4.2852 13 8 4.5346 -0.2852 -3.8453 14 7 6.7751 0.3699 -4.6463 15 6 7.1596 -1.0424 -4.7057 16 6 7.5884 1.3799 -5.3280 17 6 8.7299 1.7922 -4.4348 18 1 8.7942 1.4068 -3.4280 19 6 9.6924 2.6615 -4.9030 20 7 10.7418 2.9419 -4.1616 21 14 9.5057 3.4407 -6.5904 22 1 8.7646 4.7215 -6.4649 23 1 10.8493 3.7007 -7.1669 24 1 8.7549 2.5195 -7.4807 25 6 3.5806 -1.1969 -0.0054 26 6 4.3342 -2.5020 -0.0117 27 6 2.1981 -1.1969 0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8899 0.5139 31 1 1.6583 2.1326 -0.0004 32 1 4.1204 2.1327 -0.0010 33 1 6.1425 -0.8336 0.5988 34 1 6.1424 0.9373 0.4197 35 1 8.2271 0.6786 -0.9894 36 1 8.1293 -1.0928 -0.8449 37 1 8.1778 -0.3328 -2.4535 38 1 5.8466 1.8965 -1.8186 39 1 6.6894 -1.5109 -5.5704 40 1 8.2432 -1.1205 -4.7946 41 1 6.8324 -1.5467 -3.7965 42 1 7.9839 0.9632 -6.2543 43 1 6.9721 2.2499 -5.5552 44 1 11.4187 3.5537 -4.4908 45 1 4.4578 -2.8552 1.0120 46 1 3.7758 -3.2412 -0.5861 47 1 5.3140 -2.3537 -0.4656 48 1 1.6581 -2.1322 0.0014 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066581600.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:26 Heat of formation + Delta-G solvation = -69.236075 kcal Electronic energy + Delta-G solvation = -29251.872518 eV Core-core repulsion = 25432.827734 eV Total energy + Delta-G solvation = -3819.044784 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.81899 -36.98936 -36.45394 -35.60413 -35.23571 -33.63578 -32.43418 -32.06603 -30.15148 -28.46373 -28.19759 -27.15404 -25.19858 -24.74367 -22.10632 -21.87180 -21.35673 -20.00200 -18.94030 -17.45935 -16.89135 -16.65449 -16.23321 -15.83705 -15.48216 -14.96627 -14.77196 -14.33184 -14.12151 -13.74652 -13.51731 -13.40403 -13.22257 -13.12421 -13.08170 -12.69170 -12.55269 -12.49611 -12.40206 -12.06661 -11.85096 -11.77693 -11.75013 -11.58807 -11.49845 -11.37066 -11.21374 -11.16317 -10.85112 -10.82601 -10.70072 -10.62424 -10.41434 -10.19258 -9.56727 -9.15930 -8.67248 -8.63266 -8.30731 -8.07746 -6.15609 -4.14970 1.27490 1.39897 1.47234 3.27087 3.33277 3.37375 3.48617 3.75209 4.15417 4.36148 4.73076 4.75939 4.87556 4.94378 4.98498 5.06031 5.14634 5.18999 5.28785 5.35412 5.42777 5.46239 5.50391 5.57376 5.60269 5.62537 5.74259 5.79861 5.82540 5.85186 5.93114 5.99047 6.10879 6.18531 6.21965 6.25830 6.41599 6.46006 6.53345 6.62935 6.71915 6.76959 6.84368 7.10490 7.12197 7.27139 7.50761 7.58160 8.41739 8.89469 9.46010 10.96453 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017919 B = 0.003623 C = 0.003477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.253167 B = 7725.600821 C = 8051.065180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.092 4.092 3 C -0.127 4.127 4 C -0.107 4.107 5 C -0.079 4.079 6 C -0.086 4.086 7 C 0.157 3.843 8 H 0.086 0.914 9 C -0.176 4.176 10 N -1.114 6.114 11 S 2.789 3.211 12 O -0.984 6.984 13 O -0.994 6.994 14 N -0.992 5.992 15 C 0.103 3.897 16 C 0.214 3.786 17 C -0.542 4.542 18 H 0.087 0.913 19 C 0.076 3.924 20 N -0.894 5.894 21 Si 0.868 3.132 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.264 1.264 25 C -0.076 4.076 26 C -0.119 4.119 27 C -0.119 4.119 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.080 0.920 38 H 0.413 0.587 39 H 0.045 0.955 40 H 0.077 0.923 41 H 0.053 0.947 42 H 0.036 0.964 43 H 0.042 0.958 44 H 0.264 0.736 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.892 -9.375 10.105 18.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.145 4.145 4 C -0.125 4.125 5 C -0.079 4.079 6 C -0.124 4.124 7 C 0.050 3.950 8 H 0.103 0.897 9 C -0.235 4.235 10 N -0.873 5.873 11 S 2.796 3.204 12 O -0.968 6.968 13 O -0.977 6.977 14 N -0.833 5.833 15 C -0.044 4.044 16 C 0.090 3.910 17 C -0.581 4.581 18 H 0.105 0.895 19 C -0.127 4.127 20 N -0.532 5.532 21 Si 0.695 3.305 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.188 1.188 25 C -0.076 4.076 26 C -0.176 4.176 27 C -0.137 4.137 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.246 0.754 39 H 0.064 0.936 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -13.589 -9.347 9.637 19.102 hybrid contribution 0.550 0.981 -0.563 1.258 sum -13.039 -8.366 9.074 17.954 Atomic orbital electron populations 1.20765 0.91525 1.02353 1.02259 1.19845 0.95838 0.93272 1.00235 1.20983 0.94271 0.97400 1.01827 1.21036 0.94092 0.97605 0.99808 1.19655 0.95388 0.92635 1.00213 1.20941 0.91143 1.03714 0.96651 1.20724 0.94806 0.88195 0.91303 0.89656 1.22455 0.94353 1.02320 1.04391 1.55928 1.85000 1.15780 1.30604 1.01627 0.73300 0.72864 0.72630 1.93569 1.82937 1.40908 1.79372 1.93559 1.62500 1.54907 1.86780 1.57413 1.45736 1.13553 1.66638 1.21308 1.02195 0.80634 1.00238 1.19610 0.91256 0.86543 0.93560 1.21537 1.06966 1.27970 1.01592 0.89489 1.24849 0.94701 0.96041 0.97154 1.69897 1.10032 1.35516 1.37732 0.86988 0.77654 0.80808 0.85051 1.19814 1.21140 1.18837 1.19714 0.93606 0.94888 0.99385 1.20880 1.00525 0.94186 1.01981 1.20824 0.93502 0.97351 1.02024 0.91259 0.91818 0.91768 0.86349 0.86086 0.89710 0.90204 0.91431 0.92342 0.90114 0.75378 0.93635 0.90410 0.92784 0.94605 0.94046 0.92577 0.91334 0.91491 0.91005 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.03 10.01 36.00 0.36 -0.67 16 2 C -0.09 -1.11 5.88 -104.62 -0.62 -1.72 16 3 C -0.13 -1.59 9.70 -39.58 -0.38 -1.97 16 4 C -0.11 -1.39 9.53 -39.58 -0.38 -1.77 16 5 C -0.08 -1.01 4.85 -104.63 -0.51 -1.52 16 6 C -0.09 -0.98 4.27 -27.89 -0.12 -1.10 16 7 C 0.16 2.15 2.41 -67.93 -0.16 1.99 16 8 H 0.09 1.18 5.61 -51.93 -0.29 0.89 16 9 C -0.18 -2.47 9.21 37.16 0.34 -2.13 16 10 N -1.11 -18.02 5.06 -4.89 -0.02 -18.05 16 11 S 2.79 54.92 6.08 -107.50 -0.65 54.27 16 12 O -0.98 -22.61 16.61 -57.17 -0.95 -23.56 16 13 O -0.99 -20.33 16.66 -57.17 -0.95 -21.29 16 14 N -0.99 -19.81 3.10 -123.05 -0.38 -20.19 16 15 C 0.10 1.69 9.02 59.85 0.54 2.23 16 16 C 0.21 4.98 4.46 -5.19 -0.02 4.96 16 17 C -0.54 -14.11 9.93 -34.44 -0.34 -14.45 16 18 H 0.09 2.33 6.69 -52.49 -0.35 1.98 16 19 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.89 -25.80 13.96 55.43 0.77 -25.03 16 21 Si 0.87 20.79 27.53 -169.99 -4.68 16.11 16 22 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.26 -6.04 6.47 56.52 0.37 -5.67 16 25 C -0.08 -0.95 5.88 -104.62 -0.62 -1.56 16 26 C -0.12 -1.19 9.32 36.01 0.34 -0.86 16 27 C -0.12 -1.45 9.37 -39.58 -0.37 -1.82 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 31 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 32 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.08 0.81 6.98 -51.93 -0.36 0.45 16 34 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.08 1.32 5.32 -51.93 -0.28 1.04 16 38 H 0.41 6.22 8.86 -34.47 -0.31 5.91 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.27 8.07 -51.93 -0.42 0.85 16 41 H 0.05 0.77 6.64 -51.93 -0.34 0.43 16 42 H 0.04 0.82 7.05 -51.93 -0.37 0.45 16 43 H 0.04 1.02 6.41 -51.93 -0.33 0.69 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 47 H 0.07 0.70 5.26 -51.93 -0.27 0.43 16 48 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -33.06 391.41 -10.56 -43.62 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -7.55 Total: 6.65 kcal Atomic # 6 Polarization: -16.39 SS G_CDS: -2.04 Total: -18.43 kcal Atomic # 7 Polarization: -63.63 SS G_CDS: 0.37 Total: -63.26 kcal Atomic # 8 Polarization: -42.94 SS G_CDS: -1.90 Total: -44.84 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.68 Total: 16.11 kcal Atomic # 16 Polarization: 54.92 SS G_CDS: -0.65 Total: 54.27 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.06 -10.56 -43.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066581600.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.616 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds