Wall clock time and date at job start Tue Mar 31 2020 05:46:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99848 * 2 1 4 4 H 1.48498 * 109.47340 * 270.00782 * 3 2 1 5 5 H 1.48507 * 109.46961 * 30.00524 * 3 2 1 6 6 H 1.48500 * 109.47230 * 150.00279 * 3 2 1 7 7 C 1.37869 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00075 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00073 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47129 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47183 * 180.02562 * 10 9 7 12 12 N 1.46899 * 109.47044 * 179.97438 * 11 10 9 13 13 C 1.46847 * 110.99862 * 170.00059 * 12 11 10 14 14 C 1.53044 * 109.51335 * 174.15436 * 13 12 11 15 15 C 1.53119 * 109.27589 * 59.18419 * 14 13 12 16 16 C 1.50700 * 109.51956 * 182.44007 * 15 14 13 17 17 N 1.30801 * 125.39964 * 59.68906 * 16 15 14 18 18 N 1.40431 * 106.98482 * 179.89519 * 17 16 15 19 19 H 0.97003 * 126.87291 * 180.11485 * 18 17 16 20 20 C 1.35254 * 106.25463 * 0.36903 * 18 17 16 21 21 C 1.47987 * 126.10146 * 179.80178 * 20 18 17 22 22 C 1.39496 * 120.13407 * 179.69715 * 21 20 18 23 23 C 1.37980 * 119.86050 * 179.71801 * 22 21 20 24 24 C 1.38351 * 120.13254 * 0.55684 * 23 22 21 25 25 C 1.38339 * 120.27746 * 359.72248 * 24 23 22 26 26 C 1.37980 * 120.14038 * 359.97438 * 25 24 23 27 27 N 1.31752 * 107.79387 * 359.77735 * 20 18 17 28 28 C 1.53120 * 109.16202 * 302.34077 * 15 14 13 29 29 C 1.46847 * 110.99299 * 45.79217 * 12 11 10 30 30 H 0.96998 * 120.00179 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47252 * 59.99815 * 9 7 2 32 32 H 1.08997 * 109.46818 * 299.99924 * 9 7 2 33 33 H 1.08999 * 109.47300 * 59.99728 * 10 9 7 34 34 H 1.09007 * 109.47157 * 299.99681 * 10 9 7 35 35 H 1.09002 * 109.46622 * 59.99826 * 11 10 9 36 36 H 1.08997 * 109.46688 * 299.99762 * 11 10 9 37 37 H 1.09002 * 109.46448 * 54.14158 * 13 12 11 38 38 H 1.08994 * 109.45958 * 294.16523 * 13 12 11 39 39 H 1.09000 * 109.49745 * 179.12223 * 14 13 12 40 40 H 1.08996 * 109.50070 * 299.23917 * 14 13 12 41 41 H 1.08993 * 109.52284 * 62.25342 * 15 14 13 42 42 H 1.08000 * 120.07091 * 359.97438 * 22 21 20 43 43 H 1.07998 * 119.93418 * 180.29946 * 23 22 21 44 44 H 1.08007 * 119.85728 * 179.69369 * 24 23 22 45 45 H 1.08001 * 119.92817 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.07082 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.50328 * 177.59853 * 28 15 14 48 48 H 1.09004 * 109.50202 * 297.68149 * 28 15 14 49 49 H 1.09005 * 109.46836 * 65.83946 * 29 12 11 50 50 H 1.08995 * 109.45748 * 305.85482 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7002 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0023 11 6 5.5516 -2.6364 -0.0022 12 7 6.0413 -4.0214 -0.0027 13 6 7.4896 -4.0674 -0.2407 14 6 7.9870 -5.5069 -0.0902 15 6 7.2569 -6.4017 -1.0956 16 6 7.6987 -7.8307 -0.9115 17 7 7.5713 -8.5275 0.1881 18 7 8.1052 -9.8007 -0.0689 19 1 8.1559 -10.5463 0.5495 20 6 8.5397 -9.7775 -1.3496 21 6 9.1851 -10.8965 -2.0717 22 6 9.5808 -10.7372 -3.3999 23 6 10.1873 -11.7823 -4.0660 24 6 10.3928 -12.9900 -3.4229 25 6 9.9973 -13.1559 -2.1077 26 6 9.3954 -12.1164 -1.4288 27 7 8.2854 -8.5812 -1.8395 28 6 5.7479 -6.2981 -0.8575 29 6 5.3154 -4.8356 -0.9858 30 1 -0.4850 0.8400 0.0004 31 1 3.8753 -0.6803 0.8888 32 1 3.8745 -0.6799 -0.8911 33 1 3.6579 -3.1497 -0.8924 34 1 3.6586 -3.1509 0.8876 35 1 5.9148 -2.1232 0.8882 36 1 5.9149 -2.1219 -0.8918 37 1 7.9971 -3.4301 0.4835 38 1 7.7033 -3.7129 -1.2490 39 1 9.0593 -5.5433 -0.2822 40 1 7.7858 -5.8573 0.9221 41 1 7.4891 -6.0754 -2.1093 42 1 9.4166 -9.7966 -3.9044 43 1 10.4985 -11.6588 -5.0928 44 1 10.8635 -13.8067 -3.9501 45 1 10.1608 -14.1009 -1.6110 46 1 9.0875 -12.2470 -0.4019 47 1 5.2205 -6.8998 -1.5977 48 1 5.5114 -6.6616 0.1425 49 1 5.5396 -4.4775 -1.9907 50 1 4.2439 -4.7564 -0.8026 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066831217.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:06 Heat of formation + Delta-G solvation = 98.650905 kcal Electronic energy + Delta-G solvation = -27816.903384 eV Core-core repulsion = 24037.820620 eV Total energy + Delta-G solvation = -3779.082764 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 340.196 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.46113 -39.57125 -38.99657 -35.38848 -33.57642 -32.85633 -32.50718 -31.48625 -31.18157 -30.69446 -29.67323 -27.09046 -24.91716 -24.36601 -23.28888 -23.06460 -22.10066 -21.32152 -20.54941 -19.69176 -19.39237 -18.79164 -17.09757 -16.69723 -16.17524 -15.87312 -15.79366 -15.31064 -14.90987 -14.66329 -14.44972 -14.35107 -14.09525 -14.02639 -13.67225 -13.43932 -13.27945 -13.14457 -12.60102 -12.54771 -12.19226 -11.95861 -11.78153 -11.70873 -11.65199 -11.18287 -11.11335 -11.00093 -10.76713 -10.58227 -10.56583 -10.52053 -10.29874 -10.04128 -9.91437 -9.58566 -9.57156 -9.51910 -9.10187 -8.99276 -8.49220 -8.02449 -5.99735 -3.97289 0.19753 0.79361 1.57467 2.20150 2.58928 3.30411 3.33964 3.41257 3.42271 3.45512 4.12379 4.14809 4.23779 4.32525 4.45908 4.49439 4.56258 4.79295 4.82219 4.86046 4.97517 5.16449 5.21244 5.26247 5.34390 5.42502 5.44497 5.54029 5.62293 5.66746 5.69387 5.77408 5.80714 5.82391 5.89178 5.90337 5.95908 6.03638 6.09573 6.15094 6.20118 6.23350 6.29673 6.39637 6.60259 6.65195 6.66507 6.94591 7.33312 7.37211 7.41445 7.51096 7.77428 7.85144 8.59504 9.05747 9.63117 11.13848 Molecular weight = 340.20amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.001582 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.133958 B =17694.044710 C =17809.408926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.518 4.518 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.106 4.106 11 C 0.054 3.946 12 N -0.538 5.538 13 C 0.057 3.943 14 C -0.104 4.104 15 C 0.005 3.995 16 C 0.244 3.756 17 N -0.297 5.297 18 N -0.480 5.480 19 H 0.439 0.561 20 C 0.321 3.679 21 C -0.032 4.032 22 C -0.065 4.065 23 C -0.120 4.120 24 C -0.101 4.101 25 C -0.119 4.119 26 C -0.100 4.100 27 N -0.526 5.526 28 C -0.105 4.105 29 C 0.050 3.950 30 H 0.262 0.738 31 H 0.016 0.984 32 H 0.009 0.991 33 H 0.056 0.944 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.076 0.924 38 H 0.033 0.967 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.128 0.872 45 H 0.130 0.870 46 H 0.122 0.878 47 H 0.066 0.934 48 H 0.079 0.921 49 H 0.033 0.967 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.270 -27.767 -5.513 37.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.556 4.556 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.143 4.143 11 C -0.073 4.073 12 N -0.263 5.263 13 C -0.071 4.071 14 C -0.143 4.143 15 C -0.017 4.017 16 C -0.039 4.039 17 N -0.125 5.125 18 N -0.198 5.198 19 H 0.285 0.715 20 C 0.045 3.955 21 C -0.035 4.035 22 C -0.086 4.086 23 C -0.138 4.138 24 C -0.120 4.120 25 C -0.137 4.137 26 C -0.120 4.120 27 N -0.254 5.254 28 C -0.144 4.144 29 C -0.078 4.078 30 H 0.072 0.928 31 H 0.034 0.966 32 H 0.027 0.973 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.051 0.949 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.146 0.854 45 H 0.148 0.852 46 H 0.140 0.860 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.051 0.949 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.743 -27.353 -4.707 37.183 hybrid contribution 0.622 0.518 -0.424 0.914 sum 25.365 -26.834 -5.131 37.280 Atomic orbital electron populations 1.69919 1.06298 1.26793 1.51418 1.25035 0.94720 0.99153 0.94652 0.86772 0.80395 0.83656 0.78413 1.20404 1.21441 1.18996 1.21156 0.89552 0.94435 1.50471 0.91055 1.19550 0.97117 0.92316 0.96124 1.21633 0.91238 0.99817 1.01636 1.22302 0.97640 0.87166 1.00204 1.62019 1.02849 1.11874 1.49561 1.22042 0.89259 0.96089 0.99727 1.21611 0.98619 0.94282 0.99783 1.19713 0.96535 0.84091 1.01331 1.24247 0.95463 0.97793 0.86361 1.78105 1.21708 0.89831 1.22854 1.48088 1.47151 1.13041 1.11498 0.71499 1.22217 0.95900 0.93641 0.83729 1.17623 1.01538 0.90144 0.94166 1.21329 0.94889 0.99823 0.92522 1.21223 0.99091 0.92967 1.00542 1.21394 0.98230 0.97609 0.94783 1.21050 0.98916 0.98800 0.94958 1.21095 0.98975 0.92202 0.99710 1.70553 1.21221 1.01364 1.32259 1.21649 0.92661 0.96982 1.03140 1.22213 1.00291 0.91870 0.93414 0.92819 0.96585 0.97292 0.92516 0.91881 0.91055 0.95339 0.90545 0.94915 0.91695 0.90255 0.88736 0.84137 0.85009 0.85399 0.85199 0.86042 0.91508 0.90254 0.94854 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.38 13.96 55.43 0.77 -27.60 16 2 C 0.07 1.93 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.10 27.47 -169.99 -4.67 17.44 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 8 H 0.07 2.22 7.99 -52.48 -0.42 1.81 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.43 16 10 C -0.11 -2.12 4.40 -26.73 -0.12 -2.24 16 11 C 0.05 0.90 5.27 -3.82 -0.02 0.88 16 12 N -0.54 -8.00 4.81 -234.66 -1.13 -9.12 16 13 C 0.06 0.71 5.43 -3.83 -0.02 0.69 16 14 C -0.10 -1.20 5.36 -26.65 -0.14 -1.35 16 15 C 0.00 0.05 2.73 -91.65 -0.25 -0.20 16 16 C 0.24 3.10 6.64 -157.00 -1.04 2.06 16 17 N -0.30 -3.72 12.79 32.39 0.41 -3.31 16 18 N -0.48 -4.54 7.35 32.25 0.24 -4.30 16 19 H 0.44 2.54 8.12 -182.34 -1.48 1.06 16 20 C 0.32 3.26 7.82 -155.45 -1.22 2.05 16 21 C -0.03 -0.25 5.87 -104.97 -0.62 -0.86 16 22 C -0.07 -0.47 9.69 -39.21 -0.38 -0.85 16 23 C -0.12 -0.62 10.03 -39.63 -0.40 -1.02 16 24 C -0.10 -0.43 10.04 -39.50 -0.40 -0.83 16 25 C -0.12 -0.52 10.03 -39.64 -0.40 -0.91 16 26 C -0.10 -0.54 9.70 -39.21 -0.38 -0.92 16 27 N -0.53 -6.54 10.85 -8.66 -0.09 -6.63 16 28 C -0.11 -1.34 5.36 -26.65 -0.14 -1.48 16 29 C 0.05 0.71 4.85 -3.83 -0.02 0.69 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.35 16 31 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 32 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 33 H 0.06 1.13 6.21 -51.93 -0.32 0.81 16 34 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.03 0.47 8.08 -51.93 -0.42 0.05 16 37 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 38 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.14 1.05 7.85 -52.49 -0.41 0.64 16 43 H 0.13 0.42 8.06 -52.49 -0.42 -0.01 16 44 H 0.13 0.27 8.06 -52.48 -0.42 -0.16 16 45 H 0.13 0.27 8.06 -52.49 -0.42 -0.15 16 46 H 0.12 0.38 7.21 -52.49 -0.38 0.01 16 47 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 49 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 1.45 5.81 -51.93 -0.30 1.15 16 LS Contribution 400.29 15.07 6.03 6.03 Total: -1.00 -34.26 400.29 -13.68 -47.94 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -9.16 Total: -2.16 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -6.08 Total: -18.28 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.20 Total: -50.97 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.26 -13.68 -47.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066831217.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.589 kcal (2) G-P(sol) polarization free energy of solvation -34.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds