Wall clock time and date at job start Tue Mar 31 2020 05:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13603 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47057 * 157.31354 * 3 2 1 5 5 C 1.36716 * 119.99810 * 263.68853 * 4 3 2 6 6 H 1.08001 * 119.99838 * 199.91168 * 5 4 3 7 7 C 1.39126 * 120.00065 * 19.91745 * 5 4 3 8 8 N 1.31326 * 119.99821 * 15.46287 * 7 5 4 9 9 Si 1.86795 * 119.99860 * 195.46840 * 7 5 4 10 10 H 1.48502 * 109.47123 * 59.99477 * 9 7 5 11 11 H 1.48500 * 109.47299 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47131 * 299.99795 * 9 7 5 13 13 C 1.34774 * 119.99751 * 83.68464 * 4 3 2 14 14 O 1.21763 * 119.99465 * 180.02562 * 13 4 3 15 15 C 1.46230 * 120.00450 * 0.02562 * 13 4 3 16 16 C 1.34977 * 119.99928 * 179.97438 * 15 13 4 17 17 C 1.47162 * 119.99574 * 180.02562 * 16 15 13 18 18 C 1.39908 * 120.14789 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.93650 * 179.97438 * 18 17 16 20 20 C 1.38347 * 120.23041 * 359.72013 * 19 18 17 21 21 C 1.38870 * 120.29516 * 0.55729 * 20 19 18 22 22 O 1.35912 * 119.96450 * 179.72019 * 21 20 19 23 23 C 1.42904 * 116.99862 * 173.84294 * 22 21 20 24 24 C 1.54887 * 110.48405 * 88.88354 * 23 22 21 25 25 C 1.54892 * 102.74825 * 156.62525 * 24 23 22 26 26 C 1.54268 * 104.19545 * 322.05559 * 25 24 23 27 27 C 1.53880 * 106.59573 * 23.61295 * 26 25 24 28 28 C 1.38406 * 120.06202 * 359.44638 * 21 20 19 29 29 H 1.09000 * 109.47894 * 37.31177 * 3 2 1 30 30 H 1.09006 * 109.47473 * 277.30688 * 3 2 1 31 31 H 0.97001 * 119.99700 * 180.02562 * 8 7 5 32 32 H 1.07997 * 119.99959 * 359.97438 * 15 13 4 33 33 H 1.07997 * 120.00113 * 359.97438 * 16 15 13 34 34 H 1.07999 * 120.03208 * 0.02562 * 18 17 16 35 35 H 1.07994 * 119.88854 * 180.02562 * 19 18 17 36 36 H 1.08007 * 119.85104 * 180.29581 * 20 19 18 37 37 H 1.09000 * 110.53853 * 326.27341 * 23 22 21 38 38 H 1.09004 * 110.75624 * 274.93680 * 24 23 22 39 39 H 1.08996 * 110.75766 * 38.30867 * 24 23 22 40 40 H 1.08995 * 110.48578 * 203.37939 * 25 24 23 41 41 H 1.08996 * 110.49018 * 80.73487 * 25 24 23 42 42 H 1.08997 * 110.03429 * 264.32882 * 26 25 24 43 43 H 1.09000 * 110.07496 * 142.91487 * 26 25 24 44 44 H 1.09003 * 110.03015 * 240.71732 * 27 26 25 45 45 H 1.09001 * 110.07366 * 119.30777 * 27 26 25 46 46 H 1.08004 * 120.11256 * 180.29967 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0958 1.2753 -0.5327 5 6 3.4463 1.3761 -1.8503 6 1 4.0912 2.1782 -2.1777 7 6 2.9721 0.4455 -2.7695 8 7 1.9654 -0.3360 -2.4528 9 14 3.7676 0.3077 -4.4540 10 1 5.2023 -0.0421 -4.2967 11 1 3.0837 -0.7509 -5.2393 12 1 3.6497 1.6062 -5.1648 13 6 3.1988 2.3484 0.2761 14 8 3.6038 3.4078 -0.1668 15 6 2.8244 2.2404 1.6855 16 6 2.9281 3.3151 2.4956 17 6 2.5518 3.2062 3.9141 18 6 2.0866 1.9902 4.4263 19 6 1.7357 1.8929 5.7562 20 6 1.8474 2.9926 6.5883 21 6 2.3025 4.2057 6.0887 22 8 2.4042 5.2832 6.9109 23 6 3.0053 6.4600 6.3668 24 6 1.9345 7.3536 5.6931 25 6 2.5905 8.7564 5.7256 26 6 3.3168 8.8030 7.0859 27 6 3.5805 7.3428 7.4934 28 6 2.6580 4.3171 4.7557 29 1 2.9718 -0.8165 -0.6229 30 1 2.9715 -0.1299 1.0194 31 1 1.6350 -0.9851 -3.0935 32 1 2.4648 1.3008 2.0783 33 1 3.2881 4.2546 2.1029 34 1 2.0033 1.1283 3.7809 35 1 1.3772 0.9538 6.1509 36 1 1.5753 2.9082 7.6301 37 1 3.7856 6.1958 5.6531 38 1 1.7556 7.0347 4.6662 39 1 1.0084 7.3468 6.2678 40 1 1.8293 9.5348 5.6728 41 1 3.3038 8.8631 4.9085 42 1 2.6860 9.2901 7.8295 43 1 4.2605 9.3395 6.9879 44 1 3.0777 7.1213 8.4349 45 1 4.6521 7.1699 7.5931 46 1 3.0167 5.2589 4.3674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067922879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:45 Heat of formation + Delta-G solvation = 0.952796 kcal Electronic energy + Delta-G solvation = -28091.085154 eV Core-core repulsion = 24139.640037 eV Total energy + Delta-G solvation = -3951.445117 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.44971 -38.98446 -38.30919 -36.50609 -35.83716 -34.46188 -33.37898 -31.94997 -30.44486 -29.48531 -29.04314 -27.92490 -27.51336 -25.44674 -23.48892 -22.82083 -21.09469 -20.81454 -20.38357 -18.78743 -18.05175 -17.62909 -16.99580 -16.32349 -16.21682 -16.00120 -15.61119 -15.25051 -14.84991 -14.50437 -14.22006 -14.10320 -13.67931 -13.59382 -13.29951 -13.15192 -13.06163 -12.90002 -12.57541 -12.32811 -12.05970 -11.90029 -11.67630 -11.58527 -11.45768 -11.39850 -11.36190 -11.21269 -11.03344 -10.90046 -10.80465 -10.65784 -10.61802 -10.49734 -10.41936 -9.85849 -9.34961 -8.69743 -8.46584 -8.14376 -7.89510 -6.61563 -4.08206 0.79075 1.44095 2.35292 3.04195 3.11442 3.15898 3.18234 3.60597 3.83081 3.93836 4.05022 4.17703 4.23799 4.26463 4.53633 4.60361 4.78585 4.84609 4.88824 4.98612 5.06518 5.09216 5.10151 5.17540 5.23802 5.27965 5.29999 5.36280 5.49886 5.52289 5.56393 5.62356 5.71616 5.75221 5.84550 5.86124 5.96952 5.99385 6.07286 6.28655 6.30440 6.46295 6.49247 6.72881 6.79338 6.92764 7.33938 7.38841 7.84376 8.20326 8.70532 8.91263 9.07835 9.68419 10.42854 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016825 B = 0.002317 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.742972 B =12081.619509 C =13251.662038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C 0.246 3.754 3 C 0.218 3.782 4 N -0.428 5.428 5 C -0.303 4.303 6 H 0.111 0.889 7 C 0.030 3.970 8 N -0.874 5.874 9 Si 0.935 3.065 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.271 1.271 13 C 0.471 3.529 14 O -0.581 6.581 15 C -0.157 4.157 16 C -0.083 4.083 17 C -0.008 4.008 18 C -0.149 4.149 19 C -0.079 4.079 20 C -0.159 4.159 21 C 0.129 3.871 22 O -0.309 6.309 23 C 0.077 3.923 24 C -0.149 4.149 25 C -0.124 4.124 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.198 4.198 29 H 0.132 0.868 30 H 0.085 0.915 31 H 0.277 0.723 32 H 0.119 0.881 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.647 7.783 18.936 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.073 4.073 3 C 0.091 3.909 4 N -0.146 5.146 5 C -0.431 4.431 6 H 0.128 0.872 7 C -0.174 4.174 8 N -0.513 5.513 9 Si 0.761 3.239 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.196 1.196 13 C 0.263 3.737 14 O -0.466 6.466 15 C -0.178 4.178 16 C -0.104 4.104 17 C -0.008 4.008 18 C -0.168 4.168 19 C -0.097 4.097 20 C -0.178 4.178 21 C 0.084 3.916 22 O -0.223 6.223 23 C 0.020 3.980 24 C -0.187 4.187 25 C -0.162 4.162 26 C -0.160 4.160 27 C -0.157 4.157 28 C -0.217 4.217 29 H 0.150 0.850 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.137 0.863 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.018 8.147 18.759 20.551 hybrid contribution 0.568 -0.254 -1.205 1.356 sum 2.586 7.893 17.555 19.420 Atomic orbital electron populations 1.80905 1.13545 1.08519 1.12076 1.29253 0.95315 0.92579 0.90126 1.18850 0.81674 0.91072 0.99297 1.43544 1.54678 1.06749 1.09599 1.19776 1.27541 1.13877 0.81893 0.87175 1.25426 0.94983 0.96622 1.00416 1.69747 1.21666 1.22476 1.37364 0.85834 0.79166 0.78335 0.80543 1.19506 1.20839 1.19645 1.17965 0.85420 0.84036 0.86324 1.90667 1.51469 1.27508 1.76937 1.23326 1.00868 0.99064 0.94574 1.22094 0.98316 0.99596 0.90356 1.18908 0.96041 0.92794 0.93059 1.21361 1.02040 0.97613 0.95741 1.20859 0.97835 0.97823 0.93188 1.20448 1.06035 0.90627 1.00643 1.18845 0.96453 0.87244 0.89066 1.86091 1.76576 1.20107 1.39564 1.23388 0.95068 0.83362 0.96149 1.23056 0.98965 0.95086 1.01571 1.22286 0.99731 0.96719 0.97474 1.22091 1.00785 0.95694 0.97385 1.22165 1.01099 0.93864 0.98608 1.21417 1.07573 0.99852 0.92815 0.85005 0.89753 0.91210 0.86307 0.85083 0.85411 0.85306 0.85568 0.89986 0.90643 0.90240 0.91065 0.91101 0.91380 0.91331 0.90315 0.90854 0.85149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -11.11 18.54 42.15 0.78 -10.33 16 2 C 0.25 5.37 13.25 -20.76 -0.28 5.09 16 3 C 0.22 4.27 4.78 -6.83 -0.03 4.23 16 4 N -0.43 -9.95 2.59 -119.59 -0.31 -10.26 16 5 C -0.30 -7.68 9.32 -15.04 -0.14 -7.82 16 6 H 0.11 2.92 7.38 -52.49 -0.39 2.54 16 7 C 0.03 0.72 5.00 -17.44 -0.09 0.63 16 8 N -0.87 -21.44 9.22 55.51 0.51 -20.92 16 9 Si 0.94 19.21 29.58 -169.99 -5.03 14.18 16 10 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 11 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 13 C 0.47 10.87 7.49 -13.05 -0.10 10.77 16 14 O -0.58 -15.38 15.90 5.13 0.08 -15.30 16 15 C -0.16 -2.88 8.46 -37.53 -0.32 -3.20 16 16 C -0.08 -1.39 9.46 -37.12 -0.35 -1.74 16 17 C -0.01 -0.11 5.87 -105.08 -0.62 -0.73 16 18 C -0.15 -1.99 9.41 -39.09 -0.37 -2.36 16 19 C -0.08 -0.91 10.02 -39.67 -0.40 -1.31 16 20 C -0.16 -1.88 9.98 -39.31 -0.39 -2.27 16 21 C 0.13 1.64 6.65 -39.29 -0.26 1.38 16 22 O -0.31 -3.67 9.85 -19.46 -0.19 -3.86 16 23 C 0.08 0.74 2.68 -25.08 -0.07 0.67 16 24 C -0.15 -1.35 6.36 -24.74 -0.16 -1.51 16 25 C -0.12 -0.90 6.83 -25.07 -0.17 -1.08 16 26 C -0.12 -0.80 6.80 -25.61 -0.17 -0.97 16 27 C -0.12 -0.92 6.56 -25.61 -0.17 -1.09 16 28 C -0.20 -2.63 8.56 -38.95 -0.33 -2.97 16 29 H 0.13 2.61 6.39 -51.93 -0.33 2.28 16 30 H 0.08 1.26 6.47 -51.93 -0.34 0.92 16 31 H 0.28 6.59 8.31 -40.82 -0.34 6.25 16 32 H 0.12 1.87 4.22 -52.49 -0.22 1.65 16 33 H 0.13 2.29 7.52 -52.49 -0.39 1.90 16 34 H 0.13 1.59 6.16 -52.49 -0.32 1.26 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 37 H 0.08 0.79 6.31 -51.93 -0.33 0.46 16 38 H 0.07 0.73 7.54 -51.93 -0.39 0.34 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.13 1.57 5.44 -52.48 -0.29 1.29 16 LS Contribution 383.24 15.07 5.78 5.78 Total: -1.00 -30.82 383.24 -8.72 -39.54 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.93 Total: 5.45 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -4.41 Total: -4.26 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.98 Total: -41.52 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: -0.11 Total: -19.16 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.03 Total: 14.18 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.82 -8.72 -39.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067922879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.492 kcal (2) G-P(sol) polarization free energy of solvation -30.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds