Wall clock time and date at job start Tue Mar 31 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 114.00176 * 2 1 4 4 C 1.53003 * 109.47073 * 180.02562 * 3 2 1 5 5 N 1.46505 * 109.46857 * 65.00232 * 4 3 2 6 6 C 1.46499 * 120.00127 * 275.00008 * 5 4 3 7 7 C 1.50709 * 109.47069 * 275.00354 * 6 5 4 8 8 H 1.07998 * 119.99428 * 359.97438 * 7 6 5 9 9 C 1.37873 * 120.00183 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99746 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99946 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46975 * 60.00550 * 11 9 7 13 13 H 1.48508 * 109.46590 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47361 * 299.99951 * 11 9 7 15 15 S 1.65595 * 119.99789 * 95.00341 * 5 4 3 16 16 O 1.42100 * 106.40541 * 156.46124 * 15 5 4 17 17 O 1.42099 * 106.40810 * 23.53287 * 15 5 4 18 18 C 1.76205 * 107.21570 * 269.99725 * 15 5 4 19 19 C 1.38437 * 119.91087 * 270.23489 * 18 15 5 20 20 C 1.38380 * 120.34481 * 180.28311 * 19 18 15 21 21 C 1.37914 * 120.17182 * 359.47977 * 20 19 18 22 22 C 1.39828 * 119.82356 * 0.26395 * 21 20 19 23 23 C 1.47168 * 120.17116 * 179.97438 * 22 21 20 24 24 C 1.50703 * 119.99720 * 359.97438 * 23 22 21 25 25 O 1.21251 * 120.00499 * 179.97438 * 23 22 21 26 26 C 1.37865 * 119.91606 * 90.00056 * 18 15 5 27 27 H 1.08997 * 109.47602 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46970 * 299.99678 * 1 2 3 29 29 H 1.09001 * 109.47525 * 59.99329 * 1 2 3 30 30 H 1.08998 * 109.46527 * 60.00573 * 3 2 1 31 31 H 1.09000 * 109.47401 * 300.00378 * 3 2 1 32 32 H 1.08999 * 109.46889 * 305.00506 * 4 3 2 33 33 H 1.08993 * 109.46862 * 185.00137 * 4 3 2 34 34 H 1.08999 * 109.47215 * 34.99898 * 6 5 4 35 35 H 1.08994 * 109.47557 * 155.00098 * 6 5 4 36 36 H 0.97003 * 119.99914 * 179.97438 * 10 9 7 37 37 H 1.07991 * 119.82663 * 0.03941 * 19 18 15 38 38 H 1.08002 * 119.91533 * 179.76681 * 20 19 18 39 39 H 1.07999 * 120.08530 * 180.23581 * 21 20 19 40 40 H 1.08999 * 109.47150 * 60.00144 * 24 23 22 41 41 H 1.08999 * 109.47220 * 179.97438 * 24 23 22 42 42 H 1.08996 * 109.47481 * 300.00211 * 24 23 22 43 43 H 1.08000 * 120.08355 * 359.97438 * 26 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2528 6 6 4.0002 -0.8951 -1.3784 7 6 5.2993 -1.4248 -0.8277 8 1 6.0331 -0.7425 -0.4250 9 6 5.5507 -2.7804 -0.8381 10 7 4.6571 -3.6111 -1.3290 11 14 7.1611 -3.4368 -0.1562 12 1 7.2826 -3.0604 1.2751 13 1 7.1860 -4.9162 -0.2833 14 1 8.2951 -2.8558 -0.9188 15 16 4.4453 1.5130 -2.5263 16 8 5.3005 0.7115 -3.3298 17 8 4.8426 2.7600 -1.9727 18 6 3.0090 1.8339 -3.4952 19 6 2.6634 0.9735 -4.5232 20 6 1.5406 1.2200 -5.2935 21 6 0.7508 2.3207 -5.0352 22 6 1.0903 3.1916 -3.9952 23 6 0.2532 4.3687 -3.7132 24 6 -0.9731 4.6383 -4.5466 25 8 0.5501 5.1216 -2.8103 26 6 2.2297 2.9384 -3.2245 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.6886 1.8462 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.8514 0.5680 0.8409 33 1 3.9785 2.1764 0.0889 34 1 3.1677 -1.3219 -0.8192 35 1 3.9116 -1.1710 -2.4291 36 1 4.8341 -4.5648 -1.3367 37 1 3.2754 0.1075 -4.7275 38 1 1.2795 0.5463 -6.0962 39 1 -0.1273 2.5097 -5.6349 40 1 -1.6625 3.7984 -4.4610 41 1 -1.4612 5.5460 -4.1918 42 1 -0.6830 4.7653 -5.5895 43 1 2.4983 3.6064 -2.4195 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069350312.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:46 Heat of formation + Delta-G solvation = -122.911790 kcal Electronic energy + Delta-G solvation = -28816.902266 eV Core-core repulsion = 24761.978172 eV Total energy + Delta-G solvation = -4054.924094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.17345 -38.31792 -37.80644 -36.70063 -35.40314 -35.21953 -32.51469 -32.38291 -31.32202 -29.65625 -29.52572 -26.76946 -25.69727 -24.15841 -23.09877 -22.80366 -21.79489 -20.50190 -18.34025 -17.75748 -17.03211 -16.46494 -16.19982 -15.95233 -15.86441 -15.69987 -15.55581 -15.26718 -15.04254 -14.65774 -14.42227 -14.17968 -14.01855 -13.50787 -13.08622 -12.82842 -12.60482 -12.45796 -12.31781 -12.23568 -12.07644 -11.96061 -11.75221 -11.62377 -11.45920 -11.25940 -11.02576 -10.84631 -10.71270 -10.61516 -10.34823 -10.00624 -9.97000 -9.73322 -9.56580 -9.34422 -9.17646 -8.36199 -8.04188 -5.98967 -4.02006 0.35683 0.78950 1.01637 2.10864 3.31939 3.38540 3.41459 3.46224 3.68649 3.74424 4.10411 4.27739 4.50055 4.53310 4.60411 4.72189 4.86695 4.91523 5.02885 5.10375 5.25041 5.33178 5.34317 5.36847 5.43299 5.52279 5.59306 5.60658 5.63702 5.69435 5.73603 5.86738 5.92519 6.01489 6.04921 6.29651 6.52635 6.59011 7.24096 7.37685 7.44217 7.48430 7.74461 7.98590 8.28813 8.99452 9.61848 11.09562 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014760 B = 0.004051 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.600789 B = 6910.458183 C = 7366.459869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.040 3.960 4 C 0.121 3.879 5 N -0.971 5.971 6 C 0.256 3.744 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.064 3.936 10 N -0.895 5.895 11 Si 0.894 3.106 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.275 1.275 15 S 2.679 3.321 16 O -0.937 6.937 17 O -0.974 6.974 18 C -0.683 4.683 19 C 0.019 3.981 20 C -0.152 4.152 21 C -0.029 4.029 22 C -0.201 4.201 23 C 0.395 3.605 24 C -0.199 4.199 25 O -0.455 6.455 26 C 0.033 3.967 27 H 0.084 0.916 28 H 0.034 0.966 29 H 0.032 0.968 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.057 0.943 35 H 0.033 0.967 36 H 0.263 0.737 37 H 0.149 0.851 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.901 11.653 -6.217 19.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.039 4.039 4 C -0.006 4.006 5 N -0.810 5.810 6 C 0.135 3.865 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.138 4.138 10 N -0.534 5.534 11 Si 0.722 3.278 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.201 1.201 15 S 2.766 3.234 16 O -0.927 6.927 17 O -0.964 6.964 18 C -0.766 4.766 19 C 0.000 4.000 20 C -0.171 4.171 21 C -0.047 4.047 22 C -0.203 4.203 23 C 0.273 3.727 24 C -0.256 4.256 25 O -0.331 6.331 26 C 0.014 3.986 27 H 0.102 0.898 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.167 0.833 38 H 0.157 0.843 39 H 0.154 0.846 40 H 0.112 0.888 41 H 0.104 0.896 42 H 0.112 0.888 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -12.863 11.975 -5.970 18.561 hybrid contribution -0.276 -0.418 -0.033 0.502 sum -13.139 11.557 -6.003 18.500 Atomic orbital electron populations 1.22693 0.82473 1.02434 0.98995 1.88128 1.18307 1.26758 1.95094 1.23199 0.95720 0.85417 0.99592 1.21357 0.90743 0.99482 0.89009 1.57365 1.81600 1.19015 1.23059 1.19212 0.98411 0.70928 0.97943 1.21466 1.02587 0.92132 1.40509 0.92259 1.24885 0.96870 0.96729 0.95351 1.69921 1.34535 1.03122 1.45824 0.86619 0.84102 0.77576 0.79498 1.20223 1.21285 1.20067 1.02513 0.74165 0.73054 0.73678 1.93613 1.61327 1.68675 1.69074 1.93509 1.80656 1.43986 1.78245 1.31694 1.25180 1.04618 1.15128 1.21359 0.93824 0.95571 0.89247 1.21306 0.95911 0.98515 1.01332 1.21659 0.97441 0.92100 0.93523 1.20585 0.99299 0.99576 1.00862 1.22484 0.85157 0.82614 0.82445 1.22249 0.97176 1.04579 1.01629 1.90562 1.69534 1.45225 1.27733 1.21154 0.89811 0.92569 0.95097 0.89792 0.94716 0.94935 0.92781 0.94249 0.88131 0.88600 0.92489 0.94884 0.92785 0.83295 0.84346 0.84576 0.88771 0.89565 0.88779 0.83569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.36 -6.31 9.02 -35.23 -0.32 -6.63 16 3 C 0.04 0.61 6.28 37.16 0.23 0.84 16 4 C 0.12 2.11 6.13 -4.04 -0.02 2.08 16 5 N -0.97 -20.02 2.75 -115.66 -0.32 -20.34 16 6 C 0.26 6.35 4.94 -5.19 -0.03 6.32 16 7 C -0.53 -14.65 9.38 -34.44 -0.32 -14.97 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 11 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 S 2.68 53.25 5.64 -107.50 -0.61 52.65 16 16 O -0.94 -21.71 16.25 -57.17 -0.93 -22.64 16 17 O -0.97 -19.90 15.82 -57.17 -0.90 -20.81 16 18 C -0.68 -11.12 5.97 -39.64 -0.24 -11.35 16 19 C 0.02 0.28 9.52 -39.46 -0.38 -0.10 16 20 C -0.15 -1.66 10.03 -39.65 -0.40 -2.06 16 21 C -0.03 -0.28 9.47 -39.11 -0.37 -0.65 16 22 C -0.20 -2.44 5.87 -105.07 -0.62 -3.05 16 23 C 0.39 4.38 7.23 -30.68 -0.22 4.16 16 24 C -0.20 -1.26 8.93 36.01 0.32 -0.93 16 25 O -0.46 -6.66 17.08 5.58 0.10 -6.57 16 26 C 0.03 0.49 7.91 -39.11 -0.31 0.18 16 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.04 0.58 6.95 -51.93 -0.36 0.22 16 32 H 0.10 1.81 8.11 -51.93 -0.42 1.39 16 33 H 0.10 1.50 6.91 -51.93 -0.36 1.14 16 34 H 0.06 1.48 6.60 -51.93 -0.34 1.13 16 35 H 0.03 0.86 7.61 -51.93 -0.40 0.46 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.15 2.20 7.61 -52.49 -0.40 1.80 16 38 H 0.14 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.14 0.75 7.05 -52.49 -0.37 0.38 16 40 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 41 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 42 H 0.09 0.41 8.09 -51.93 -0.42 -0.01 16 43 H 0.15 2.22 7.20 -52.49 -0.38 1.85 16 LS Contribution 377.93 15.07 5.70 5.70 Total: -1.00 -35.43 377.93 -8.85 -44.28 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.95 Total: -0.88 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -1.33 Total: -16.31 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.42 Total: -45.54 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -2.06 Total: -56.65 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: 53.25 SS G_CDS: -0.61 Total: 52.65 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.43 -8.85 -44.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069350312.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.630 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds