Wall clock time and date at job start Tue Mar 31 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46965 * 2 1 4 4 N 1.46502 * 109.46791 * 186.14923 * 3 2 1 5 5 C 1.36909 * 120.00290 * 279.15209 * 4 3 2 6 6 H 1.08003 * 119.99718 * 170.23677 * 5 4 3 7 7 C 1.39020 * 119.99621 * 350.23933 * 5 4 3 8 8 N 1.31384 * 120.00304 * 29.99904 * 7 5 4 9 9 Si 1.86803 * 119.99501 * 209.99634 * 7 5 4 10 10 H 1.48497 * 109.46903 * 95.00401 * 9 7 5 11 11 H 1.48500 * 109.46874 * 214.99958 * 9 7 5 12 12 H 1.48492 * 109.47452 * 334.99853 * 9 7 5 13 13 C 1.34780 * 119.99639 * 99.15628 * 4 3 2 14 14 O 1.21618 * 119.99684 * 185.02011 * 13 4 3 15 15 C 1.47502 * 120.00327 * 5.02393 * 13 4 3 16 16 C 1.40318 * 120.50371 * 133.20514 * 15 13 4 17 17 C 1.36957 * 118.46897 * 179.97438 * 16 15 13 18 18 C 1.39149 * 119.40125 * 359.97438 * 17 16 15 19 19 O 1.35506 * 119.51227 * 180.02562 * 18 17 16 20 20 C 1.42901 * 116.99953 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.47153 * 180.02562 * 20 19 18 22 22 C 1.38234 * 119.99525 * 269.72869 * 21 20 19 23 23 C 1.38242 * 119.99716 * 179.76310 * 22 21 20 24 24 C 1.38237 * 119.99785 * 0.50794 * 23 22 21 25 25 C 1.38236 * 119.99813 * 359.74499 * 24 23 22 26 26 C 1.38224 * 120.00261 * 90.00021 * 21 20 19 27 27 N 1.32435 * 120.97885 * 359.97438 * 18 17 16 28 28 C 1.31701 * 121.66168 * 0.02562 * 27 18 17 29 29 H 1.09006 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47177 * 299.99879 * 1 2 3 31 31 H 1.08992 * 109.47287 * 59.99764 * 1 2 3 32 32 H 1.08997 * 109.47062 * 239.99742 * 2 1 3 33 33 H 1.08999 * 109.46914 * 120.00143 * 2 1 3 34 34 H 1.09004 * 109.47152 * 66.15288 * 3 2 1 35 35 H 1.08997 * 109.47103 * 306.14960 * 3 2 1 36 36 H 0.97000 * 119.99728 * 179.97438 * 8 7 5 37 37 H 1.07996 * 120.76493 * 359.95477 * 16 15 13 38 38 H 1.08008 * 120.29560 * 180.02562 * 17 16 15 39 39 H 1.08994 * 109.47232 * 300.00434 * 20 19 18 40 40 H 1.09006 * 109.46978 * 60.00146 * 20 19 18 41 41 H 1.08001 * 120.00355 * 359.97438 * 22 21 20 42 42 H 1.07999 * 120.00295 * 180.22823 * 23 22 21 43 43 H 1.07996 * 120.00301 * 179.72115 * 24 23 22 44 44 H 1.08006 * 119.99673 * 179.97438 * 25 24 23 45 45 H 1.08008 * 120.00182 * 0.02562 * 26 21 20 46 46 H 1.08003 * 119.75041 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4975 1.4451 -0.1480 5 6 4.2964 1.2160 0.9400 6 1 5.3571 1.0610 0.8079 7 6 3.7424 1.1829 2.2146 8 7 2.5015 0.7846 2.3814 9 14 4.7623 1.7048 3.6900 10 1 4.4950 3.1331 3.9962 11 1 4.3982 0.8705 4.8634 12 1 6.2041 1.5255 3.3836 13 6 4.0518 1.6730 -1.3551 14 8 5.2564 1.5852 -1.4974 15 6 3.1975 2.0291 -2.5037 16 6 3.5410 3.1011 -3.3414 17 6 2.7181 3.3950 -4.3961 18 6 1.5756 2.6288 -4.6053 19 8 0.7602 2.9173 -5.6484 20 6 -0.3975 2.0960 -5.8133 21 6 -1.1772 2.5625 -7.0157 22 6 -2.1662 3.5173 -6.8701 23 6 -2.8782 3.9488 -7.9737 24 6 -2.6082 3.4178 -9.2212 25 6 -1.6227 2.4592 -9.3658 26 6 -0.9073 2.0316 -8.2630 27 7 1.2738 1.6212 -3.8007 28 6 2.0362 1.3034 -2.7749 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.7693 1.9235 0.9400 35 1 1.5895 1.9871 -0.8298 36 1 2.1151 0.7612 3.2708 37 1 4.4334 3.6812 -3.1586 38 1 2.9545 4.2136 -5.0599 39 1 -0.0906 1.0604 -5.9592 40 1 -1.0235 2.1676 -4.9238 41 1 -2.3804 3.9286 -5.8947 42 1 -3.6483 4.6974 -7.8607 43 1 -3.1674 3.7515 -10.0827 44 1 -1.4121 2.0441 -10.3404 45 1 -0.1379 1.2821 -8.3760 46 1 1.7609 0.4751 -2.1388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069414229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:58 Heat of formation + Delta-G solvation = 12.415728 kcal Electronic energy + Delta-G solvation = -28684.640190 eV Core-core repulsion = 24733.692143 eV Total energy + Delta-G solvation = -3950.948047 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.58370 -39.56520 -38.65921 -37.20820 -35.48405 -32.72754 -32.32713 -32.19951 -31.49894 -31.17321 -30.01410 -26.73085 -25.87945 -24.87344 -23.35764 -22.97262 -22.85154 -21.41506 -20.79081 -19.58572 -18.34534 -17.41663 -17.03233 -16.67210 -16.29725 -16.17292 -15.41481 -14.96598 -14.85350 -14.70878 -14.19787 -14.04587 -13.71732 -13.67402 -13.49814 -13.41175 -13.00750 -12.90252 -12.73167 -12.53435 -12.28534 -12.04227 -11.86293 -11.52578 -11.37602 -11.25669 -11.01891 -10.97206 -10.78723 -10.45655 -10.36857 -10.17297 -9.81663 -9.63691 -9.54176 -9.18744 -9.09128 -8.79368 -8.51904 -8.08038 -7.92968 -6.52037 -3.83110 0.95595 1.13686 1.29575 1.54684 3.05249 3.09660 3.22040 3.27128 3.68464 3.69912 4.01073 4.22224 4.49693 4.57727 4.57883 4.71823 4.74505 4.85560 4.94048 5.07554 5.20761 5.27751 5.31963 5.39352 5.41031 5.50457 5.60285 5.71356 5.77408 5.89013 5.94257 5.99931 6.14531 6.16979 6.19130 6.22349 6.33597 6.37624 6.55370 6.58038 6.66242 6.70245 6.77471 6.84327 7.24289 7.38264 7.42076 7.69788 7.98927 8.06839 8.40157 9.06595 9.30488 9.88939 10.44657 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021724 B = 0.002362 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.605174 B =11850.060427 C =12580.302284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.112 3.888 4 N -0.425 5.425 5 C -0.309 4.309 6 H 0.109 0.891 7 C 0.038 3.962 8 N -0.848 5.848 9 Si 0.916 3.084 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.473 3.527 14 O -0.591 6.591 15 C -0.174 4.174 16 C -0.009 4.009 17 C -0.193 4.193 18 C 0.311 3.689 19 O -0.303 6.303 20 C 0.112 3.888 21 C -0.093 4.093 22 C -0.096 4.096 23 C -0.125 4.125 24 C -0.114 4.114 25 C -0.125 4.125 26 C -0.096 4.096 27 N -0.541 5.541 28 C 0.146 3.854 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.039 0.961 32 H 0.033 0.967 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.040 0.960 36 H 0.270 0.730 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.125 0.875 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.256 3.880 -15.575 20.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C -0.012 4.012 4 N -0.141 5.141 5 C -0.436 4.436 6 H 0.127 0.873 7 C -0.167 4.167 8 N -0.486 5.486 9 Si 0.742 3.258 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.262 3.738 14 O -0.478 6.478 15 C -0.180 4.180 16 C -0.036 4.036 17 C -0.213 4.213 18 C 0.132 3.868 19 O -0.210 6.210 20 C 0.037 3.963 21 C -0.093 4.093 22 C -0.114 4.114 23 C -0.143 4.143 24 C -0.132 4.132 25 C -0.143 4.143 26 C -0.114 4.114 27 N -0.264 5.264 28 C -0.010 4.010 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.161 0.839 38 H 0.157 0.843 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.143 0.857 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.555 3.514 -15.806 20.489 hybrid contribution 0.815 0.514 0.962 1.362 sum -11.739 4.028 -14.844 19.349 Atomic orbital electron populations 1.21651 0.97108 1.00338 1.00792 1.22052 0.93974 0.98012 1.02573 1.21965 0.80248 0.97164 1.01787 1.43785 1.05869 1.57671 1.06777 1.19735 0.93311 1.47342 0.83179 0.87290 1.25277 0.96370 0.95982 0.99036 1.70148 1.15034 1.39734 1.23656 0.86081 0.80691 0.78935 0.80125 1.20301 1.21066 1.19189 1.17409 0.87376 0.86640 0.82406 1.90621 1.14500 1.58972 1.83687 1.21125 0.97926 0.99089 0.99848 1.21159 0.97523 0.93985 0.90892 1.20641 0.95226 1.03643 1.01822 1.19916 0.89006 0.90810 0.87037 1.86224 1.35107 1.55541 1.44160 1.21354 0.85011 0.94213 0.95700 1.19658 0.97065 0.98310 0.94265 1.21137 0.95309 0.95680 0.99236 1.21164 1.00095 1.00294 0.92710 1.21216 0.97732 0.96818 0.97461 1.21159 0.96538 0.97919 0.98664 1.21127 0.98822 0.99533 0.91906 1.67380 1.34181 1.17528 1.07329 1.23388 0.88655 0.97686 0.91266 0.93794 0.92706 0.94161 0.94859 0.87097 0.87762 0.94208 0.91956 0.83852 0.84322 0.90679 0.90607 0.85728 0.85831 0.86006 0.85846 0.85767 0.80768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.91 37.16 0.37 -1.96 16 2 C -0.13 -2.55 4.84 -26.73 -0.13 -2.68 16 3 C 0.11 2.41 4.17 -4.04 -0.02 2.40 16 4 N -0.43 -10.53 2.64 -116.00 -0.31 -10.83 16 5 C -0.31 -8.18 9.33 -14.99 -0.14 -8.32 16 6 H 0.11 3.09 7.34 -52.48 -0.39 2.70 16 7 C 0.04 0.93 5.09 -17.45 -0.09 0.85 16 8 N -0.85 -20.12 8.06 55.50 0.45 -19.67 16 9 Si 0.92 19.58 29.65 -169.99 -5.04 14.54 16 10 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 13 C 0.47 11.63 7.22 -12.48 -0.09 11.54 16 14 O -0.59 -16.50 16.61 5.26 0.09 -16.41 16 15 C -0.17 -3.54 5.03 -104.83 -0.53 -4.07 16 16 C -0.01 -0.17 9.81 -39.26 -0.39 -0.55 16 17 C -0.19 -2.98 9.97 -39.71 -0.40 -3.38 16 18 C 0.31 5.04 7.49 -16.95 -0.13 4.91 16 19 O -0.30 -4.41 10.09 -18.21 -0.18 -4.59 16 20 C 0.11 1.38 5.43 36.01 0.20 1.58 16 21 C -0.09 -1.01 5.51 -104.63 -0.58 -1.59 16 22 C -0.10 -0.94 9.70 -39.58 -0.38 -1.33 16 23 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 24 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 25 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 26 C -0.10 -0.94 9.70 -39.59 -0.38 -1.33 16 27 N -0.54 -9.29 9.19 -12.93 -0.12 -9.40 16 28 C 0.15 2.72 8.61 -17.10 -0.15 2.57 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.03 0.65 6.18 -51.93 -0.32 0.33 16 33 H 0.11 2.52 6.03 -51.93 -0.31 2.20 16 34 H 0.10 2.42 5.88 -51.93 -0.31 2.12 16 35 H 0.04 0.80 5.09 -51.93 -0.26 0.54 16 36 H 0.27 6.07 8.31 -40.82 -0.34 5.73 16 37 H 0.14 2.37 8.06 -52.49 -0.42 1.94 16 38 H 0.14 1.76 8.06 -52.48 -0.42 1.34 16 39 H 0.07 0.91 8.04 -51.93 -0.42 0.50 16 40 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 41 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 44 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 45 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 46 H 0.18 3.24 3.93 -52.48 -0.21 3.04 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -29.21 379.18 -9.42 -38.62 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -5.99 Total: 7.59 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -4.02 Total: -5.56 kcal Atomic # 7 Polarization: -39.93 SS G_CDS: 0.02 Total: -39.91 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.10 Total: -21.00 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.04 Total: 14.54 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.21 -9.42 -38.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069414229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.039 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds