Wall clock time and date at job start Tue Mar 31 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46965 * 2 1 4 4 N 1.46502 * 109.46791 * 186.14923 * 3 2 1 5 5 C 1.36909 * 120.00290 * 279.15209 * 4 3 2 6 6 H 1.08003 * 119.99718 * 170.23677 * 5 4 3 7 7 C 1.39020 * 119.99621 * 350.23933 * 5 4 3 8 8 N 1.31384 * 120.00304 * 29.99904 * 7 5 4 9 9 Si 1.86803 * 119.99501 * 209.99634 * 7 5 4 10 10 H 1.48497 * 109.46903 * 95.00401 * 9 7 5 11 11 H 1.48500 * 109.46874 * 214.99958 * 9 7 5 12 12 H 1.48492 * 109.47452 * 334.99853 * 9 7 5 13 13 C 1.34780 * 119.99639 * 99.15628 * 4 3 2 14 14 O 1.21618 * 119.99684 * 185.02011 * 13 4 3 15 15 C 1.47502 * 120.00327 * 5.02393 * 13 4 3 16 16 C 1.40318 * 120.50371 * 133.20514 * 15 13 4 17 17 C 1.36957 * 118.46897 * 179.97438 * 16 15 13 18 18 C 1.39149 * 119.40125 * 359.97438 * 17 16 15 19 19 O 1.35506 * 119.51227 * 180.02562 * 18 17 16 20 20 C 1.42901 * 116.99953 * 179.97438 * 19 18 17 21 21 C 1.50703 * 109.47153 * 180.02562 * 20 19 18 22 22 C 1.38234 * 119.99525 * 269.72869 * 21 20 19 23 23 C 1.38242 * 119.99716 * 179.76310 * 22 21 20 24 24 C 1.38237 * 119.99785 * 0.50794 * 23 22 21 25 25 C 1.38236 * 119.99813 * 359.74499 * 24 23 22 26 26 C 1.38224 * 120.00261 * 90.00021 * 21 20 19 27 27 N 1.32435 * 120.97885 * 359.97438 * 18 17 16 28 28 C 1.31701 * 121.66168 * 0.02562 * 27 18 17 29 29 H 1.09006 * 109.47297 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47177 * 299.99879 * 1 2 3 31 31 H 1.08992 * 109.47287 * 59.99764 * 1 2 3 32 32 H 1.08997 * 109.47062 * 239.99742 * 2 1 3 33 33 H 1.08999 * 109.46914 * 120.00143 * 2 1 3 34 34 H 1.09004 * 109.47152 * 66.15288 * 3 2 1 35 35 H 1.08997 * 109.47103 * 306.14960 * 3 2 1 36 36 H 0.97000 * 119.99728 * 179.97438 * 8 7 5 37 37 H 1.07996 * 120.76493 * 359.95477 * 16 15 13 38 38 H 1.08008 * 120.29560 * 180.02562 * 17 16 15 39 39 H 1.08994 * 109.47232 * 300.00434 * 20 19 18 40 40 H 1.09006 * 109.46978 * 60.00146 * 20 19 18 41 41 H 1.08001 * 120.00355 * 359.97438 * 22 21 20 42 42 H 1.07999 * 120.00295 * 180.22823 * 23 22 21 43 43 H 1.07996 * 120.00301 * 179.72115 * 24 23 22 44 44 H 1.08006 * 119.99673 * 179.97438 * 25 24 23 45 45 H 1.08008 * 120.00182 * 0.02562 * 26 21 20 46 46 H 1.08003 * 119.75041 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4975 1.4451 -0.1480 5 6 4.2964 1.2160 0.9400 6 1 5.3571 1.0610 0.8079 7 6 3.7424 1.1829 2.2146 8 7 2.5015 0.7846 2.3814 9 14 4.7623 1.7048 3.6900 10 1 4.4950 3.1331 3.9962 11 1 4.3982 0.8705 4.8634 12 1 6.2041 1.5255 3.3836 13 6 4.0518 1.6730 -1.3551 14 8 5.2564 1.5852 -1.4974 15 6 3.1975 2.0291 -2.5037 16 6 3.5410 3.1011 -3.3414 17 6 2.7181 3.3950 -4.3961 18 6 1.5756 2.6288 -4.6053 19 8 0.7602 2.9173 -5.6484 20 6 -0.3975 2.0960 -5.8133 21 6 -1.1772 2.5625 -7.0157 22 6 -2.1662 3.5173 -6.8701 23 6 -2.8782 3.9488 -7.9737 24 6 -2.6082 3.4178 -9.2212 25 6 -1.6227 2.4592 -9.3658 26 6 -0.9073 2.0316 -8.2630 27 7 1.2738 1.6212 -3.8007 28 6 2.0362 1.3034 -2.7749 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.7693 1.9235 0.9400 35 1 1.5895 1.9871 -0.8298 36 1 2.1151 0.7612 3.2708 37 1 4.4334 3.6812 -3.1586 38 1 2.9545 4.2136 -5.0599 39 1 -0.0906 1.0604 -5.9592 40 1 -1.0235 2.1676 -4.9238 41 1 -2.3804 3.9286 -5.8947 42 1 -3.6483 4.6974 -7.8607 43 1 -3.1674 3.7515 -10.0827 44 1 -1.4121 2.0441 -10.3404 45 1 -0.1379 1.2821 -8.3760 46 1 1.7609 0.4751 -2.1388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069414229.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:57 Heat of formation + Delta-G solvation = -3.146874 kcal Electronic energy + Delta-G solvation = -28685.315035 eV Core-core repulsion = 24733.692143 eV Total energy + Delta-G solvation = -3951.622892 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.96283 -40.65296 -39.96176 -38.52775 -37.35724 -34.36708 -33.62649 -33.33559 -33.20945 -31.82286 -31.41374 -27.93108 -27.36941 -26.55833 -24.77150 -24.36881 -23.51010 -22.42345 -22.19670 -21.30074 -19.58680 -18.98688 -18.54619 -18.04797 -17.45222 -17.25018 -16.80635 -16.24810 -16.10676 -16.01869 -15.72951 -15.57804 -15.10115 -14.85855 -14.82728 -14.34985 -14.26907 -14.14486 -13.91260 -13.81615 -13.65416 -13.52316 -13.29935 -13.19685 -12.69067 -12.56842 -12.27054 -12.12522 -12.02591 -11.99429 -11.97201 -11.80366 -11.45487 -11.04560 -10.98317 -10.65525 -10.36006 -9.84996 -9.84165 -9.80542 -9.48990 -8.41210 -5.82170 -0.13698 0.16953 0.23728 0.47654 1.35729 1.44426 1.54467 1.96332 2.00561 2.24601 2.68863 2.89284 2.91855 3.07291 3.23359 3.70589 3.79731 3.85951 3.86467 4.09015 4.12720 4.18743 4.27947 4.28422 4.31428 4.45986 4.48000 4.56756 4.61766 4.67257 4.72665 4.77629 4.89924 5.02498 5.04594 5.13215 5.16675 5.22430 5.28137 5.34627 5.45972 5.52151 5.58862 5.60517 5.61917 5.95693 6.03277 6.05939 6.13894 6.49448 6.67309 7.13043 7.40721 7.99388 8.53525 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021724 B = 0.002362 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.605174 B =11850.060427 C =12580.302284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.120 4.120 3 C 0.119 3.881 4 N -0.433 5.433 5 C -0.355 4.355 6 H 0.076 0.924 7 C 0.018 3.982 8 N -0.844 5.844 9 Si 0.976 3.024 10 H -0.271 1.271 11 H -0.270 1.270 12 H -0.280 1.280 13 C 0.463 3.537 14 O -0.640 6.640 15 C -0.200 4.200 16 C -0.009 4.009 17 C -0.179 4.179 18 C 0.317 3.683 19 O -0.300 6.300 20 C 0.112 3.888 21 C -0.113 4.113 22 C -0.109 4.109 23 C -0.129 4.129 24 C -0.114 4.114 25 C -0.129 4.129 26 C -0.109 4.109 27 N -0.540 5.540 28 C 0.151 3.849 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.278 0.722 37 H 0.150 0.850 38 H 0.173 0.827 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.129 0.871 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.145 0.855 45 H 0.128 0.872 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.751 4.945 -17.113 23.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.158 4.158 3 C -0.004 4.004 4 N -0.147 5.147 5 C -0.482 4.482 6 H 0.094 0.906 7 C -0.188 4.188 8 N -0.480 5.480 9 Si 0.800 3.200 10 H -0.197 1.197 11 H -0.195 1.195 12 H -0.205 1.205 13 C 0.253 3.747 14 O -0.530 6.530 15 C -0.206 4.206 16 C -0.035 4.035 17 C -0.199 4.199 18 C 0.138 3.862 19 O -0.208 6.208 20 C 0.038 3.962 21 C -0.113 4.113 22 C -0.127 4.127 23 C -0.147 4.147 24 C -0.131 4.131 25 C -0.147 4.147 26 C -0.127 4.127 27 N -0.264 5.264 28 C -0.005 4.005 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.168 0.832 38 H 0.191 0.809 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.147 0.853 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.163 0.837 45 H 0.146 0.854 46 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.116 4.571 -17.343 23.456 hybrid contribution 1.463 0.197 1.300 1.967 sum -13.654 4.768 -16.044 21.600 Atomic orbital electron populations 1.21555 0.94111 1.01748 1.01386 1.21895 0.96450 0.96394 1.01067 1.21959 0.78704 0.98326 1.01397 1.43968 1.06961 1.57225 1.06585 1.19522 0.92425 1.51365 0.84911 0.90620 1.25860 0.97673 0.94911 1.00365 1.70204 1.15352 1.37800 1.24650 0.85208 0.78595 0.78779 0.77452 1.19665 1.19491 1.20479 1.18043 0.87355 0.85977 0.83347 1.90559 1.16700 1.61027 1.84706 1.20850 0.98700 1.01446 0.99611 1.21285 0.98076 0.93268 0.90889 1.20904 0.94070 1.03884 1.01055 1.20190 0.89212 0.90037 0.86776 1.86253 1.35578 1.55865 1.43077 1.21484 0.84200 0.93924 0.96632 1.19639 0.97884 0.99732 0.94065 1.21309 0.95474 0.95729 1.00152 1.21479 1.00204 1.00506 0.92471 1.21605 0.97310 0.96009 0.98217 1.21473 0.96210 0.97826 0.99167 1.21300 0.99440 0.99894 0.92104 1.67417 1.33810 1.18113 1.07082 1.23213 0.88191 0.97379 0.91705 0.92005 0.92811 0.92773 0.95016 0.89924 0.89417 0.92675 0.91114 0.83242 0.80910 0.90817 0.90632 0.85321 0.83662 0.83354 0.83692 0.85418 0.81072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.91 71.98 0.71 -3.39 16 2 C -0.12 -4.82 4.84 30.59 0.15 -4.67 16 3 C 0.12 5.22 4.17 86.38 0.36 5.58 16 4 N -0.43 -22.40 2.64 -639.17 -1.69 -24.09 16 5 C -0.36 -19.81 9.33 84.09 0.78 -19.02 16 6 H 0.08 4.63 7.34 -2.91 -0.02 4.61 16 7 C 0.02 0.88 5.09 84.95 0.43 1.32 16 8 N -0.84 -40.25 8.06 21.68 0.17 -40.08 16 9 Si 0.98 40.70 29.65 68.60 2.03 42.73 16 10 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 11 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 12 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 13 C 0.46 23.87 7.22 86.69 0.63 24.49 16 14 O -0.64 -37.89 16.61 -4.09 -0.07 -37.96 16 15 C -0.20 -8.29 5.03 -20.00 -0.10 -8.39 16 16 C -0.01 -0.32 9.81 22.48 0.22 -0.10 16 17 C -0.18 -5.18 9.97 22.19 0.22 -4.95 16 18 C 0.32 9.70 7.49 84.82 0.64 10.34 16 19 O -0.30 -8.17 10.09 -88.07 -0.89 -9.06 16 20 C 0.11 2.61 5.43 71.24 0.39 3.00 16 21 C -0.11 -2.30 5.51 -19.87 -0.11 -2.41 16 22 C -0.11 -1.95 9.70 22.27 0.22 -1.73 16 23 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 24 C -0.11 -1.45 10.05 22.27 0.22 -1.23 16 25 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 26 C -0.11 -1.97 9.70 22.26 0.22 -1.75 16 27 N -0.54 -17.94 9.19 -307.70 -2.83 -20.77 16 28 C 0.15 5.61 8.61 85.04 0.73 6.34 16 29 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.03 1.27 6.18 -2.39 -0.01 1.25 16 33 H 0.08 3.82 6.03 -2.39 -0.01 3.80 16 34 H 0.09 4.13 5.88 -2.39 -0.01 4.12 16 35 H 0.06 2.24 5.09 -2.39 -0.01 2.22 16 36 H 0.28 12.30 8.31 -92.71 -0.77 11.53 16 37 H 0.15 4.94 8.06 -2.91 -0.02 4.92 16 38 H 0.17 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.07 1.72 8.04 -2.39 -0.02 1.70 16 40 H 0.08 1.75 8.04 -2.38 -0.02 1.73 16 41 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 43 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 44 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 46 H 0.17 6.40 3.93 -2.91 -0.01 6.39 16 Total: -1.00 -65.79 379.18 3.89 -61.89 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: 1.00 Total: 27.13 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 6.15 Total: 0.19 kcal Atomic # 7 Polarization: -80.59 SS G_CDS: -4.34 Total: -84.93 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -0.96 Total: -47.02 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -65.79 3.89 -61.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069414229.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.748 kcal (2) G-P(sol) polarization free energy of solvation -65.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds