Wall clock time and date at job start Tue Mar 31 2020 05:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38362 * 119.92375 * 2 1 4 4 C 1.38370 * 120.29389 * 180.02562 * 3 2 1 5 5 C 1.50698 * 119.92675 * 179.97438 * 4 3 2 6 6 C 1.37951 * 120.14509 * 359.97226 * 4 3 2 7 7 C 1.39595 * 119.85452 * 0.02562 * 6 4 3 8 8 C 1.47807 * 120.15230 * 180.02562 * 7 6 4 9 9 O 1.21560 * 119.99404 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00251 * 179.97438 * 8 7 6 11 11 C 1.39492 * 120.00016 * 179.97438 * 10 8 7 12 12 N 1.32288 * 119.72903 * 0.02562 * 11 10 8 13 13 C 1.31953 * 121.69246 * 180.02562 * 12 11 10 14 14 C 1.38091 * 120.95463 * 359.97352 * 13 12 11 15 15 C 1.38786 * 119.35750 * 0.30126 * 14 13 12 16 16 C 1.38792 * 118.44647 * 359.45641 * 15 14 13 17 17 O 1.35979 * 120.49690 * 180.26175 * 16 15 14 18 18 C 1.42906 * 116.99758 * 0.26198 * 17 16 15 19 19 C 1.52997 * 109.46850 * 180.02562 * 18 17 16 20 20 C 1.50697 * 109.46886 * 180.02562 * 19 18 17 21 21 H 1.07994 * 120.00259 * 359.97438 * 20 19 18 22 22 C 1.37881 * 119.99830 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99945 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00099 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46904 * 90.00144 * 24 22 20 26 26 H 1.48501 * 109.47179 * 209.99951 * 24 22 20 27 27 H 1.48500 * 109.47116 * 330.00288 * 24 22 20 28 28 C 1.37949 * 119.92700 * 180.23560 * 2 1 3 29 29 H 1.09000 * 109.47136 * 89.99795 * 1 2 3 30 30 H 1.08999 * 109.47427 * 210.00248 * 1 2 3 31 31 H 1.08999 * 109.46989 * 330.00201 * 1 2 3 32 32 H 1.07996 * 119.85662 * 359.97438 * 3 2 1 33 33 H 1.09004 * 109.46733 * 270.01754 * 5 4 3 34 34 H 1.08993 * 109.47238 * 30.01854 * 5 4 3 35 35 H 1.08997 * 109.46970 * 150.02277 * 5 4 3 36 36 H 1.08001 * 120.07840 * 179.97438 * 6 4 3 37 37 H 0.96997 * 120.00468 * 0.02562 * 10 8 7 38 38 H 1.07996 * 119.52526 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.31819 * 180.02562 * 14 13 12 40 40 H 1.07992 * 120.77282 * 179.71661 * 15 14 13 41 41 H 1.09007 * 109.46678 * 299.99742 * 18 17 16 42 42 H 1.08993 * 109.47287 * 60.00049 * 18 17 16 43 43 H 1.08999 * 109.46955 * 299.99950 * 19 18 17 44 44 H 1.09007 * 109.47241 * 59.99850 * 19 18 17 45 45 H 0.97005 * 119.99907 * 180.02562 * 23 22 20 46 46 H 1.07999 * 120.07484 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1992 0.0000 4 6 3.5809 1.2081 -0.0005 5 6 4.3243 2.5190 -0.0011 6 6 4.2814 0.0197 -0.0005 7 6 3.5912 -1.1937 -0.0005 8 6 4.3351 -2.4710 0.0002 9 8 5.5507 -2.4662 0.0002 10 7 3.6657 -3.6407 0.0007 11 6 4.3678 -4.8460 0.0008 12 7 5.6906 -4.8347 0.0008 13 6 6.3935 -5.9515 0.0003 14 6 5.7695 -7.1834 0.0003 15 6 4.3830 -7.2438 -0.0055 16 6 3.6693 -6.0535 0.0004 17 8 2.3096 -6.0641 0.0004 18 6 1.6708 -7.3424 -0.0001 19 6 0.1525 -7.1538 -0.0006 20 6 -0.5211 -8.5018 -0.0005 21 1 0.0741 -9.4029 -0.0004 22 6 -1.8974 -8.5847 -0.0004 23 7 -2.4853 -9.7611 -0.0008 24 14 -2.9270 -7.0261 0.0002 25 1 -3.2000 -6.6126 -1.3997 26 1 -4.2115 -7.2816 0.7003 27 1 -2.1881 -5.9450 0.7005 28 6 2.1952 -1.1955 -0.0049 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6537 2.1324 -0.0004 33 1 4.5028 2.8349 -1.0290 34 1 3.7297 3.2740 0.5130 35 1 5.2780 2.3960 0.5120 36 1 5.3613 0.0279 -0.0013 37 1 2.6958 -3.6445 0.0003 38 1 7.4723 -5.9014 -0.0001 39 1 6.3549 -8.0910 0.0004 40 1 3.8714 -8.1949 -0.0102 41 1 1.9681 -7.8967 -0.8903 42 1 1.9680 -7.8974 0.8897 43 1 -0.1450 -6.5992 0.8893 44 1 -0.1444 -6.5989 -0.8907 45 1 -3.4536 -9.8194 -0.0011 46 1 1.6553 -2.1308 -0.0092 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069419555.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:19 Heat of formation + Delta-G solvation = -12.919911 kcal Electronic energy + Delta-G solvation = -28214.204962 eV Core-core repulsion = 24262.158279 eV Total energy + Delta-G solvation = -3952.046683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.07270 -40.06680 -38.69598 -37.82716 -35.01540 -33.80853 -33.46175 -32.57448 -31.64870 -30.87871 -29.27326 -27.66510 -26.90779 -25.69000 -24.79678 -23.05480 -22.66186 -21.00399 -20.74267 -20.12798 -18.54194 -17.82361 -17.30220 -16.68928 -16.44135 -15.92031 -15.84181 -15.64607 -15.13132 -14.82973 -14.58733 -14.28758 -14.27027 -14.04977 -13.68275 -13.55160 -13.49162 -13.24856 -13.11005 -12.82010 -12.59674 -12.24658 -12.24431 -12.08985 -11.83311 -11.79293 -11.33120 -11.27018 -11.00931 -10.79031 -10.43889 -10.27460 -10.17705 -9.95562 -9.46581 -9.30212 -9.12642 -9.08534 -8.88422 -8.71379 -7.74666 -6.22030 -4.23823 0.56276 1.05853 1.23521 1.38379 2.74770 2.77497 3.20493 3.28369 3.30986 3.40209 3.58275 3.98390 4.23568 4.30079 4.41890 4.45619 4.66354 4.80118 4.89541 4.95450 5.00955 5.02964 5.11698 5.14301 5.19825 5.27485 5.29664 5.38586 5.41082 5.48423 5.57509 5.72639 5.74753 5.76809 5.86555 5.98666 6.04533 6.12788 6.19485 6.25344 6.25679 6.33962 6.52123 6.63138 6.91314 7.09473 7.17150 7.47626 7.60764 7.97990 8.26426 8.28968 8.78219 9.37486 10.90387 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008441 B = 0.003309 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3316.151094 B = 8459.333205 C =11744.430554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.086 4.086 3 C -0.097 4.097 4 C -0.092 4.092 5 C -0.113 4.113 6 C -0.066 4.066 7 C -0.123 4.123 8 C 0.550 3.450 9 O -0.476 6.476 10 N -0.648 5.648 11 C 0.329 3.671 12 N -0.444 5.444 13 C 0.077 3.923 14 C -0.158 4.158 15 C -0.145 4.145 16 C 0.067 3.933 17 O -0.321 6.321 18 C 0.073 3.927 19 C -0.007 4.007 20 C -0.529 4.529 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.881 3.119 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.263 1.263 28 C -0.093 4.093 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.126 0.874 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.136 0.864 37 H 0.422 0.578 38 H 0.158 0.842 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.028 0.972 44 H 0.024 0.976 45 H 0.267 0.733 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.225 19.978 -0.027 23.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.086 4.086 3 C -0.115 4.115 4 C -0.092 4.092 5 C -0.170 4.170 6 C -0.084 4.084 7 C -0.126 4.126 8 C 0.337 3.663 9 O -0.347 6.347 10 N -0.296 5.296 11 C 0.096 3.904 12 N -0.159 5.159 13 C -0.079 4.079 14 C -0.180 4.180 15 C -0.172 4.172 16 C 0.015 3.985 17 O -0.234 6.234 18 C -0.001 4.001 19 C -0.045 4.045 20 C -0.567 4.567 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.533 5.533 24 Si 0.707 3.293 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.188 1.188 28 C -0.112 4.112 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.144 0.856 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.261 0.739 38 H 0.175 0.825 39 H 0.154 0.846 40 H 0.165 0.835 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.076 0.924 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.179 20.914 -0.020 24.720 hybrid contribution -1.609 -0.620 -0.033 1.724 sum 11.570 20.295 -0.053 23.361 Atomic orbital electron populations 1.20842 0.90455 1.03312 1.02829 1.19858 0.96513 0.92633 0.99622 1.21135 0.93513 0.97732 0.99112 1.19876 0.93767 0.95329 1.00269 1.20794 1.00119 0.93518 1.02581 1.21111 1.00628 0.90203 0.96498 1.19859 0.93544 0.93206 1.06027 1.18397 0.87582 0.83144 0.77174 1.90856 1.12589 1.86621 1.44588 1.43335 1.10932 1.03252 1.72094 1.17755 0.88277 0.83356 1.00973 1.67628 1.03706 1.31073 1.13455 1.22443 0.99976 0.86737 0.98789 1.21923 0.94275 0.99518 1.02247 1.21637 0.94924 0.97725 1.02883 1.19536 0.84898 0.93074 1.00972 1.86043 1.14004 1.35437 1.87874 1.23151 0.95317 0.80874 1.00729 1.19585 0.88042 0.98976 0.97890 1.20805 0.91976 0.91214 1.52707 0.90716 1.24938 0.97774 0.96216 0.94054 1.69888 1.10167 1.23432 1.49835 0.86757 0.79816 0.83926 0.78752 1.20028 1.21131 1.18781 1.21278 0.92833 0.98444 0.98610 0.90764 0.90929 0.91323 0.85604 0.90957 0.91377 0.91217 0.84603 0.73920 0.82480 0.84607 0.83524 0.92298 0.92262 0.95376 0.95805 0.92359 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -0.82 5.87 -104.68 -0.61 -1.44 16 3 C -0.10 -0.84 9.35 -39.49 -0.37 -1.21 16 4 C -0.09 -0.85 5.87 -104.68 -0.61 -1.47 16 5 C -0.11 -0.73 10.01 36.00 0.36 -0.37 16 6 C -0.07 -0.74 9.24 -39.18 -0.36 -1.10 16 7 C -0.12 -1.54 5.87 -104.97 -0.62 -2.16 16 8 C 0.55 8.36 7.74 -12.35 -0.10 8.26 16 9 O -0.48 -8.54 14.60 5.31 0.08 -8.46 16 10 N -0.65 -9.68 5.34 -12.16 -0.06 -9.74 16 11 C 0.33 5.42 7.44 -154.50 -1.15 4.27 16 12 N -0.44 -7.39 7.87 -12.24 -0.10 -7.48 16 13 C 0.08 1.03 11.17 -17.55 -0.20 0.84 16 14 C -0.16 -1.93 10.10 -39.43 -0.40 -2.33 16 15 C -0.15 -2.06 9.14 -39.17 -0.36 -2.42 16 16 C 0.07 1.08 6.72 -38.91 -0.26 0.81 16 17 O -0.32 -5.58 9.38 -19.67 -0.18 -5.77 16 18 C 0.07 1.37 4.70 37.16 0.17 1.55 16 19 C -0.01 -0.17 4.41 -27.89 -0.12 -0.29 16 20 C -0.53 -14.19 9.66 -34.44 -0.33 -14.52 16 21 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 22 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 23 N -0.90 -26.37 13.96 55.43 0.77 -25.60 16 24 Si 0.88 20.53 27.47 -169.99 -4.67 15.86 16 25 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 28 C -0.09 -1.02 9.19 -39.18 -0.36 -1.38 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 31 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 32 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 36 H 0.14 1.52 7.65 -52.49 -0.40 1.12 16 37 H 0.42 5.55 6.08 -40.82 -0.25 5.30 16 38 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 39 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 40 H 0.15 1.93 6.44 -52.49 -0.34 1.59 16 41 H 0.06 1.06 7.69 -51.93 -0.40 0.66 16 42 H 0.06 1.07 7.71 -51.93 -0.40 0.67 16 43 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 44 H 0.02 0.53 7.57 -51.92 -0.39 0.13 16 45 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.13 1.27 6.41 -52.49 -0.34 0.93 16 LS Contribution 387.17 15.07 5.83 5.83 Total: -1.00 -32.93 387.17 -9.65 -42.58 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -6.27 Total: 4.35 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -5.06 Total: -11.57 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.61 Total: -42.82 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.11 Total: -14.23 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -4.67 Total: 15.86 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.93 -9.65 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069419555.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.661 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds