Wall clock time and date at job start Tue Mar 31 2020 05:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00462 * 2 1 4 4 H 1.48495 * 109.47496 * 270.00400 * 3 2 1 5 5 H 1.48504 * 109.46964 * 30.00629 * 3 2 1 6 6 H 1.48501 * 109.47205 * 149.99872 * 3 2 1 7 7 C 1.37885 * 119.99296 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99971 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99375 * 180.02562 * 7 2 1 10 10 N 1.46502 * 109.46810 * 179.97438 * 9 7 2 11 11 C 1.46503 * 119.99847 * 270.00100 * 10 9 7 12 12 C 1.50707 * 109.46838 * 269.99909 * 11 10 9 13 13 C 1.34511 * 125.78934 * 89.71431 * 12 11 10 14 14 C 1.41381 * 106.84112 * 179.88767 * 13 12 11 15 15 C 1.34513 * 106.83754 * 0.37904 * 14 13 12 16 16 O 1.34301 * 108.42510 * 359.76674 * 15 14 13 17 17 C 1.34781 * 120.00244 * 89.99789 * 10 9 7 18 18 O 1.21281 * 119.99369 * 359.97438 * 17 10 9 19 19 C 1.50696 * 119.99803 * 179.97438 * 17 10 9 20 20 C 1.50705 * 109.46578 * 179.97438 * 19 17 10 21 21 N 1.29740 * 126.29138 * 269.99414 * 20 19 17 22 22 O 1.41361 * 109.74059 * 180.02562 * 21 20 19 23 23 C 1.34820 * 109.32695 * 0.02562 * 22 21 20 24 24 C 1.38983 * 133.44621 * 179.97438 * 23 22 21 25 25 C 1.37794 * 119.79420 * 180.02562 * 24 23 22 26 26 C 1.38785 * 120.59884 * 0.02562 * 25 24 23 27 27 C 1.36622 * 120.51766 * 359.97438 * 26 25 24 28 28 C 1.39679 * 119.79071 * 0.02562 * 27 26 25 29 29 H 0.97003 * 119.99780 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47139 * 60.00086 * 9 7 2 31 31 H 1.08996 * 109.46955 * 299.99526 * 9 7 2 32 32 H 1.08997 * 109.47302 * 29.99501 * 11 10 9 33 33 H 1.08994 * 109.47143 * 149.99844 * 11 10 9 34 34 H 1.08004 * 126.57929 * 0.02562 * 13 12 11 35 35 H 1.08002 * 126.58400 * 180.16039 * 14 13 12 36 36 H 1.08002 * 125.78654 * 179.74984 * 15 14 13 37 37 H 1.09002 * 109.47274 * 60.00609 * 19 17 10 38 38 H 1.08996 * 109.47109 * 299.99645 * 19 17 10 39 39 H 1.08003 * 120.10178 * 359.97438 * 24 23 22 40 40 H 1.08005 * 119.70221 * 179.97438 * 25 24 23 41 41 H 1.08001 * 119.74182 * 179.72896 * 26 25 24 42 42 H 1.08005 * 120.10555 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1942 -0.0005 8 1 1.4643 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5755 -0.0001 11 6 4.2433 -3.2664 1.2686 12 6 5.6665 -3.0297 1.7043 13 6 6.0951 -2.0124 2.4728 14 6 7.4897 -2.1800 2.6338 15 6 7.8312 -3.2850 1.9470 16 8 6.7229 -3.7956 1.3861 17 6 4.2247 -3.2107 -1.1673 18 8 4.0225 -2.6388 -2.2176 19 6 4.7275 -4.6313 -1.1673 20 6 4.8947 -5.1048 -2.5882 21 7 3.9941 -5.6951 -3.3120 22 8 4.5242 -5.9871 -4.5895 23 6 5.8012 -5.5590 -4.6511 24 6 6.7724 -5.5892 -5.6449 25 6 8.0195 -5.0570 -5.3997 26 6 8.3163 -4.4906 -4.1679 27 6 7.3756 -4.4511 -3.1779 28 6 6.1052 -4.9850 -3.4059 29 1 -0.4850 0.8401 0.0004 30 1 3.8744 -0.6810 0.8905 31 1 3.8751 -0.6799 -0.8895 32 1 3.5623 -2.8824 2.0281 33 1 4.0763 -4.3355 1.1380 34 1 5.4896 -1.2208 2.8891 35 1 8.1540 -1.5412 3.1969 36 1 8.8277 -3.6924 1.8611 37 1 4.0096 -5.2708 -0.6538 38 1 5.6876 -4.6769 -0.6534 39 1 6.5505 -6.0291 -6.6060 40 1 8.7733 -5.0816 -6.1729 41 1 9.2997 -4.0815 -3.9893 42 1 7.6139 -4.0091 -2.2216 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069432726.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:54 Heat of formation + Delta-G solvation = 57.170728 kcal Electronic energy + Delta-G solvation = -29097.599981 eV Core-core repulsion = 25012.759562 eV Total energy + Delta-G solvation = -4084.840419 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.52400 -41.77974 -39.31803 -37.79706 -35.57343 -34.46551 -32.95640 -32.71531 -30.82967 -30.46893 -30.14667 -29.78659 -27.65014 -25.61373 -23.43954 -22.77428 -22.74421 -21.66234 -20.78013 -20.50767 -18.76399 -17.67255 -17.45502 -17.19925 -17.00629 -16.70383 -15.93563 -15.76558 -15.60969 -15.40034 -15.09050 -14.40647 -14.25300 -14.03633 -13.76089 -13.31161 -13.13751 -12.93578 -12.80721 -12.70187 -12.40590 -12.39152 -12.33297 -12.22670 -11.82802 -11.59616 -11.30796 -11.23376 -11.10025 -10.95606 -10.60436 -10.26021 -9.89046 -9.64131 -9.31231 -9.02385 -8.70385 -8.64431 -8.50594 -8.02299 -6.13786 -4.13822 0.56193 1.16711 1.69939 1.99997 2.51306 2.63969 2.89899 3.15327 3.25054 3.30827 3.33607 3.44791 3.68248 4.01020 4.21883 4.34573 4.47192 4.69493 4.74521 4.81517 4.94583 5.02392 5.06827 5.09513 5.19540 5.19805 5.22002 5.27729 5.41399 5.66281 5.72058 5.76916 5.82601 5.98242 5.99552 6.08886 6.11710 6.19214 6.50180 6.51440 6.55848 6.82685 7.05664 7.18646 7.25422 7.52171 7.93450 8.37968 8.68072 8.89591 9.45295 10.99293 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009230 B = 0.004185 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3032.852772 B = 6688.841878 C = 8463.213393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.076 3.924 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.534 4.534 8 H 0.077 0.923 9 C 0.218 3.782 10 N -0.585 5.585 11 C 0.188 3.812 12 C -0.030 4.030 13 C -0.192 4.192 14 C -0.213 4.213 15 C -0.047 4.047 16 O -0.178 6.178 17 C 0.519 3.481 18 O -0.519 6.519 19 C -0.080 4.080 20 C 0.160 3.840 21 N -0.272 5.272 22 O -0.093 6.093 23 C 0.084 3.916 24 C -0.128 4.128 25 C -0.065 4.065 26 C -0.153 4.153 27 C -0.034 4.034 28 C -0.181 4.181 29 H 0.266 0.734 30 H 0.034 0.966 31 H 0.038 0.962 32 H 0.123 0.877 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.145 0.855 36 H 0.199 0.801 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.787 -10.717 0.523 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.572 4.572 8 H 0.095 0.905 9 C 0.098 3.902 10 N -0.316 5.316 11 C 0.063 3.937 12 C -0.081 4.081 13 C -0.212 4.212 14 C -0.232 4.232 15 C -0.115 4.115 16 O -0.075 6.075 17 C 0.304 3.696 18 O -0.395 6.395 19 C -0.121 4.121 20 C -0.022 4.022 21 N -0.014 5.014 22 O -0.103 6.103 23 C 0.030 3.970 24 C -0.148 4.148 25 C -0.084 4.084 26 C -0.171 4.171 27 C -0.054 4.054 28 C -0.184 4.184 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.141 0.859 33 H 0.107 0.893 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.216 0.784 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.151 0.849 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 19.184 -11.038 -0.409 22.137 hybrid contribution 1.145 1.511 0.313 1.922 sum 20.329 -9.527 -0.095 22.451 Atomic orbital electron populations 1.69889 1.06181 1.27080 1.49976 1.24828 0.94731 0.98867 0.94308 0.86898 0.80198 0.83936 0.78966 1.19903 1.20955 1.18991 1.21293 0.88910 0.95017 1.51983 0.90484 1.19737 0.95807 0.76881 0.97742 1.47937 1.64036 1.16283 1.03383 1.19983 0.86286 0.98792 0.88625 1.23272 0.89929 0.93557 1.01340 1.21714 0.95247 1.00633 1.03629 1.21840 0.96061 0.99990 1.05314 1.23961 0.90357 0.97227 0.99935 1.83979 1.15572 1.48004 1.59913 1.19820 0.78539 0.86815 0.84435 1.90750 1.50814 1.67302 1.30587 1.20418 1.05517 0.96690 0.89500 1.23793 0.90044 0.92388 0.96012 1.79920 1.15684 1.17322 0.88495 1.89155 1.21703 1.70113 1.29304 1.20306 0.86547 0.94889 0.95245 1.20027 0.91363 1.05262 0.98099 1.21100 0.95297 0.94890 0.97124 1.20761 1.00041 1.02786 0.93530 1.20459 0.90381 0.94744 0.99803 1.20641 0.96192 1.08124 0.93487 0.92451 0.94846 0.94405 0.85924 0.89289 0.83249 0.83698 0.78400 0.86208 0.86037 0.84467 0.84447 0.84940 0.85058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.96 55.43 0.77 -26.36 16 2 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 3 Si 0.87 21.15 27.47 -169.99 -4.67 16.48 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.27 -5.98 6.54 56.52 0.37 -5.61 16 7 C -0.53 -14.81 9.94 -34.44 -0.34 -15.15 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.22 5.09 4.23 -5.19 -0.02 5.07 16 10 N -0.58 -11.28 2.44 -176.43 -0.43 -11.71 16 11 C 0.19 2.69 5.74 -5.19 -0.03 2.66 16 12 C -0.03 -0.40 6.85 -35.62 -0.24 -0.64 16 13 C -0.19 -2.55 10.81 -39.70 -0.43 -2.97 16 14 C -0.21 -2.36 10.91 -39.70 -0.43 -2.79 16 15 C -0.05 -0.47 12.09 29.42 0.36 -0.11 16 16 O -0.18 -2.14 9.54 5.71 0.05 -2.09 16 17 C 0.52 10.31 7.66 -10.99 -0.08 10.23 16 18 O -0.52 -12.86 15.61 5.56 0.09 -12.77 16 19 C -0.08 -1.20 4.85 -29.03 -0.14 -1.34 16 20 C 0.16 2.68 5.95 -80.12 -0.48 2.20 16 21 N -0.27 -5.08 12.81 34.91 0.45 -4.64 16 22 O -0.09 -1.64 12.06 7.68 0.09 -1.55 16 23 C 0.08 1.28 7.48 -38.47 -0.29 0.99 16 24 C -0.13 -1.44 10.07 -39.47 -0.40 -1.84 16 25 C -0.06 -0.59 10.02 -39.54 -0.40 -0.98 16 26 C -0.15 -1.47 9.97 -39.96 -0.40 -1.87 16 27 C -0.03 -0.41 10.05 -39.63 -0.40 -0.81 16 28 C -0.18 -2.75 6.32 -105.17 -0.67 -3.41 16 29 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 31 H 0.04 0.97 6.85 -51.93 -0.36 0.61 16 32 H 0.12 1.73 8.07 -51.93 -0.42 1.31 16 33 H 0.09 1.02 6.44 -51.93 -0.33 0.69 16 34 H 0.15 1.94 8.06 -52.48 -0.42 1.52 16 35 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 36 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.12 1.52 7.40 -51.93 -0.38 1.14 16 38 H 0.12 1.46 6.92 -51.93 -0.36 1.10 16 39 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.13 1.38 8.06 -52.48 -0.42 0.96 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -36.74 368.67 -7.35 -44.09 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -4.77 Total: 1.71 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -4.49 Total: -8.71 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: 0.79 Total: -42.71 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.23 Total: -16.41 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.48 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.74 -7.35 -44.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069432726.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.261 kcal (2) G-P(sol) polarization free energy of solvation -36.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds