Wall clock time and date at job start Tue Mar 31 2020 05:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38234 * 120.00108 * 2 1 4 4 C 1.38235 * 120.00095 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00190 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00573 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47059 * 89.99596 * 6 5 4 8 8 O 1.21288 * 119.99936 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00304 * 180.02562 * 7 6 5 10 10 C 1.39573 * 120.00246 * 180.02562 * 9 7 6 11 11 N 1.32271 * 119.72883 * 359.97438 * 10 9 7 12 12 C 1.31963 * 121.69355 * 180.02562 * 11 10 9 13 13 C 1.38087 * 120.95129 * 0.02562 * 12 11 10 14 14 C 1.38782 * 119.35318 * 359.68214 * 13 12 11 15 15 C 1.38795 * 118.44958 * 0.57949 * 14 13 12 16 16 O 1.35973 * 120.49983 * 179.70991 * 15 14 13 17 17 C 1.42906 * 116.99587 * 359.73087 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47325 * 59.99531 * 23 21 19 25 25 H 1.48496 * 109.47425 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.47183 * 299.99726 * 23 21 19 27 27 C 1.38241 * 119.99705 * 0.25087 * 5 4 3 28 28 C 1.38231 * 120.00086 * 359.47031 * 27 5 4 29 29 H 1.09005 * 109.47142 * 90.00234 * 1 2 3 30 30 H 1.09001 * 109.47144 * 209.99523 * 1 2 3 31 31 H 1.08999 * 109.47228 * 330.00259 * 1 2 3 32 32 H 1.08002 * 120.00031 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.00133 * 179.97438 * 4 3 2 34 34 H 1.09003 * 109.46833 * 329.99964 * 6 5 4 35 35 H 1.08993 * 109.47748 * 209.99962 * 6 5 4 36 36 H 0.97000 * 119.99844 * 359.97438 * 9 7 6 37 37 H 1.07992 * 119.52164 * 180.02562 * 12 11 10 38 38 H 1.07998 * 120.32147 * 179.97438 * 13 12 11 39 39 H 1.08006 * 120.77219 * 180.31535 * 14 13 12 40 40 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 41 41 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 42 42 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 43 43 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 44 44 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 45 45 H 1.08003 * 119.99595 * 179.73233 * 27 5 4 46 46 H 1.07998 * 120.00278 * 180.27577 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 -0.0001 0.0005 7 6 6.2810 0.0000 1.4213 8 8 5.4929 -0.0004 2.3432 9 7 7.6061 0.0004 1.6677 10 6 8.0713 -0.0001 2.9836 11 7 7.2070 -0.0005 3.9849 12 6 7.6039 -0.0004 5.2434 13 6 8.9470 0.0006 5.5645 14 6 9.8899 -0.0052 4.5462 15 6 9.4438 0.0006 3.2319 16 8 10.3314 0.0012 2.2018 17 6 11.7194 0.0017 2.5416 18 6 12.5577 0.0017 1.2617 19 6 14.0215 0.0029 1.6200 20 1 14.3237 0.0039 2.6569 21 6 14.9751 0.0036 0.6241 22 7 14.6071 0.0028 -0.6386 23 14 16.7894 0.0043 1.0681 24 1 17.1044 -1.2081 1.8655 25 1 17.6031 0.0045 -0.1741 26 1 17.1033 1.2168 1.8661 27 6 3.5805 -1.1972 -0.0052 28 6 2.1982 -1.1972 0.0000 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6582 2.1325 -0.0004 33 1 4.1205 2.1324 0.0001 34 1 6.1421 0.8899 -0.5133 35 1 6.1421 -0.8900 -0.5132 36 1 8.2365 0.0003 0.9304 37 1 6.8678 -0.0012 6.0335 38 1 9.2605 0.0010 6.5980 39 1 10.9462 -0.0097 4.7713 40 1 11.9506 -0.8883 3.1270 41 1 11.9499 0.8917 3.1272 42 1 12.3272 -0.8884 0.6764 43 1 12.3267 0.8915 0.6760 44 1 15.2779 0.0030 -1.3392 45 1 4.1206 -2.1325 -0.0096 46 1 1.6582 -2.1325 0.0000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069486023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:04 Heat of formation + Delta-G solvation = -16.186982 kcal Electronic energy + Delta-G solvation = -27633.068464 eV Core-core repulsion = 23680.880111 eV Total energy + Delta-G solvation = -3952.188354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.90610 -39.85772 -38.80343 -37.75035 -34.81886 -33.92769 -33.48345 -31.67212 -31.04490 -30.77674 -29.95965 -28.84172 -25.80108 -25.38860 -23.54896 -22.86213 -22.78298 -21.39841 -20.82474 -20.11906 -18.37983 -17.53340 -17.18769 -16.23559 -16.10800 -16.04653 -15.73925 -15.64511 -15.25213 -14.83201 -14.78562 -14.58105 -14.11506 -13.94396 -13.71434 -13.63449 -13.52070 -12.98891 -12.82167 -12.63589 -12.41032 -12.05207 -12.04659 -11.99763 -11.90326 -11.29079 -11.08614 -11.08515 -10.98702 -10.70095 -10.68336 -10.23527 -10.05660 -9.78690 -9.43703 -9.21446 -9.05011 -9.01492 -8.61797 -8.52991 -7.66029 -6.18898 -4.23986 1.16422 1.21135 1.31473 1.44946 2.73454 2.91187 3.23095 3.27825 3.28875 3.52436 3.65194 4.01321 4.32926 4.46693 4.49606 4.62487 4.75216 4.86861 4.88295 4.94753 4.95098 5.12617 5.17860 5.27324 5.27554 5.31486 5.34949 5.36925 5.46578 5.57677 5.58513 5.85042 5.88866 5.94534 5.94585 6.06239 6.18499 6.27102 6.35919 6.45294 6.46972 6.53017 6.63295 6.88459 7.27950 7.33523 7.51338 7.62966 7.84335 8.07990 8.13276 8.37461 8.80951 9.40950 10.92439 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015241 B = 0.002066 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.677668 B =13546.375832 C =15062.651981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.090 4.090 3 C -0.120 4.120 4 C -0.099 4.099 5 C -0.069 4.069 6 C -0.102 4.102 7 C 0.504 3.496 8 O -0.471 6.471 9 N -0.654 5.654 10 C 0.329 3.671 11 N -0.444 5.444 12 C 0.075 3.925 13 C -0.161 4.161 14 C -0.148 4.148 15 C 0.067 3.933 16 O -0.316 6.316 17 C 0.066 3.934 18 C 0.027 3.973 19 C -0.529 4.529 20 H 0.058 0.942 21 C 0.062 3.938 22 N -0.889 5.889 23 Si 0.899 3.101 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 C -0.100 4.100 28 C -0.120 4.120 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.424 0.576 37 H 0.156 0.844 38 H 0.134 0.866 39 H 0.145 0.855 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.028 0.972 43 H 0.028 0.972 44 H 0.265 0.735 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.515 -0.011 2.842 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.090 4.090 3 C -0.138 4.138 4 C -0.117 4.117 5 C -0.069 4.069 6 C -0.142 4.142 7 C 0.289 3.711 8 O -0.340 6.340 9 N -0.302 5.302 10 C 0.096 3.904 11 N -0.159 5.159 12 C -0.082 4.082 13 C -0.182 4.182 14 C -0.175 4.175 15 C 0.015 3.985 16 O -0.228 6.228 17 C -0.008 4.008 18 C -0.010 4.010 19 C -0.568 4.568 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.527 5.527 23 Si 0.727 3.273 24 H -0.201 1.201 25 H -0.211 1.211 26 H -0.201 1.201 27 C -0.118 4.118 28 C -0.138 4.138 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.124 0.876 35 H 0.124 0.876 36 H 0.262 0.738 37 H 0.173 0.827 38 H 0.152 0.848 39 H 0.162 0.838 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.047 0.953 43 H 0.047 0.953 44 H 0.074 0.926 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.991 -0.011 2.842 24.159 hybrid contribution 2.623 0.001 0.288 2.639 sum -21.368 -0.010 3.130 21.596 Atomic orbital electron populations 1.20781 0.91385 1.02715 1.02125 1.19907 0.95957 0.93294 0.99813 1.20955 0.94038 0.97463 1.01368 1.20970 0.94244 0.97395 0.99140 1.19227 0.93401 0.93648 1.00657 1.20692 0.93384 1.05828 0.94327 1.20724 0.81630 0.77101 0.91610 1.90814 1.54135 1.43530 1.45516 1.43525 1.08480 1.72468 1.05743 1.17827 0.85629 1.00722 0.86216 1.67630 1.35553 1.13492 0.99222 1.22408 0.94370 0.99086 0.92336 1.21889 0.93731 1.02572 0.99989 1.21610 1.01471 1.03280 0.91139 1.19606 0.89292 1.00611 0.88986 1.86097 1.18409 1.87598 1.30719 1.23397 0.75077 0.99826 1.02494 1.19121 0.92619 0.98885 0.90395 1.20910 0.90093 1.52662 0.93092 0.92392 1.24978 0.99448 0.94779 0.94880 1.69952 1.34205 1.49407 0.99088 0.86538 0.84201 0.78754 0.77840 1.20075 1.21076 1.20069 1.20973 0.94247 0.97388 0.99156 1.20956 0.94039 0.97462 1.01361 0.91310 0.91634 0.91635 0.86200 0.86172 0.87552 0.87552 0.73813 0.82689 0.84822 0.83762 0.92959 0.92953 0.95341 0.95345 0.92578 0.86169 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.09 -0.87 5.88 -104.62 -0.62 -1.49 16 3 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 4 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 5 C -0.07 -0.77 4.37 -104.62 -0.46 -1.23 16 6 C -0.10 -1.02 5.83 -29.03 -0.17 -1.19 16 7 C 0.50 7.07 7.79 -10.99 -0.09 6.99 16 8 O -0.47 -8.34 14.29 5.55 0.08 -8.26 16 9 N -0.65 -9.38 5.39 -11.29 -0.06 -9.44 16 10 C 0.33 5.45 7.45 -154.44 -1.15 4.30 16 11 N -0.44 -7.50 7.88 -12.22 -0.10 -7.60 16 12 C 0.07 1.03 11.17 -17.55 -0.20 0.83 16 13 C -0.16 -2.02 10.10 -39.44 -0.40 -2.42 16 14 C -0.15 -2.17 9.14 -39.17 -0.36 -2.53 16 15 C 0.07 1.11 6.72 -38.92 -0.26 0.84 16 16 O -0.32 -5.75 9.38 -19.66 -0.18 -5.93 16 17 C 0.07 1.29 4.70 37.16 0.17 1.47 16 18 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 19 C -0.53 -14.06 9.11 -34.44 -0.31 -14.38 16 20 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -25.38 13.29 55.43 0.74 -24.64 16 23 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 27 C -0.10 -1.08 9.70 -39.58 -0.38 -1.46 16 28 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 31 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 34 H 0.11 0.84 8.09 -51.93 -0.42 0.42 16 35 H 0.11 0.84 8.08 -51.93 -0.42 0.42 16 36 H 0.42 5.30 8.04 -40.82 -0.33 4.97 16 37 H 0.16 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.14 1.95 6.44 -52.48 -0.34 1.61 16 40 H 0.05 0.98 7.69 -51.93 -0.40 0.58 16 41 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 42 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 394.01 15.07 5.94 5.94 Total: -1.00 -33.27 394.01 -10.35 -43.63 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -6.49 Total: 4.00 kcal Atomic # 6 Polarization: -7.98 SS G_CDS: -5.25 Total: -13.24 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: 0.58 Total: -41.69 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.11 Total: -14.20 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.27 -10.35 -43.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069486023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.440 kcal (2) G-P(sol) polarization free energy of solvation -33.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds