Wall clock time and date at job start Tue Mar 31 2020 05:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.50125 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.45054 * 179.97438 * 13 12 11 15 15 C 1.38093 * 119.35013 * 359.97438 * 14 13 12 16 16 N 1.31949 * 120.95747 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.69079 * 359.70619 * 16 15 14 18 18 N 1.39581 * 119.72745 * 180.30946 * 17 16 15 19 19 C 1.34774 * 119.99990 * 0.26696 * 18 17 16 20 20 O 1.21278 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99823 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.46873 * 179.97438 * 21 19 18 23 23 C 1.50707 * 109.47099 * 180.02562 * 22 21 19 24 24 C 1.38227 * 120.00173 * 269.73405 * 23 22 21 25 25 C 1.38237 * 119.99831 * 179.76675 * 24 23 22 26 26 C 1.38231 * 120.00012 * 0.50352 * 25 24 23 27 27 C 1.38236 * 120.00201 * 359.74630 * 26 25 24 28 28 C 1.38235 * 119.99690 * 0.02562 * 27 26 25 29 29 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 1.08002 * 120.77385 * 359.97438 * 13 12 11 35 35 H 1.07997 * 120.32294 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.51530 * 179.97438 * 15 14 13 37 37 H 0.97000 * 119.99860 * 180.26729 * 18 17 16 38 38 H 1.08995 * 109.47400 * 300.00387 * 21 19 18 39 39 H 1.09002 * 109.46923 * 60.00258 * 21 19 18 40 40 H 1.08995 * 109.47518 * 300.00430 * 22 21 19 41 41 H 1.08996 * 109.46838 * 60.00844 * 22 21 19 42 42 H 1.08000 * 120.00397 * 359.97438 * 24 23 22 43 43 H 1.08006 * 119.99670 * 180.22878 * 25 24 23 44 44 H 1.08001 * 120.00334 * 179.73270 * 26 25 24 45 45 H 1.07992 * 120.00280 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.00046 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0400 -0.0004 13 6 3.6582 -5.9794 -0.0009 14 6 4.3720 -7.1695 -0.0008 15 6 3.6879 -8.3690 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6492 -7.2881 0.0080 18 7 0.2557 -7.3666 0.0159 19 6 -0.3514 -8.5699 0.0225 20 8 0.3131 -9.5844 0.0221 21 6 -1.8560 -8.6546 0.0316 22 6 -2.2840 -10.1236 0.0372 23 6 -3.7887 -10.2084 0.0456 24 6 -4.4719 -10.2501 1.2465 25 6 -5.8523 -10.3231 1.2542 26 6 -6.5489 -10.3647 0.0610 27 6 -5.8654 -10.3281 -1.1400 28 6 -4.4852 -10.2504 -1.1477 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.8721 -3.6043 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 4.1698 -5.0282 -0.0013 35 1 5.4519 -7.1576 -0.0007 36 1 4.2407 -9.2968 0.0000 37 1 -0.2758 -6.5552 0.0166 38 1 -2.2425 -8.1597 0.9225 39 1 -2.2529 -8.1643 -0.8574 40 1 -1.8976 -10.6180 -0.8539 41 1 -1.8872 -10.6142 0.9259 42 1 -3.9274 -10.2224 2.1789 43 1 -6.3863 -10.3520 2.1926 44 1 -7.6271 -10.4260 0.0669 45 1 -6.4095 -10.3611 -2.0723 46 1 -3.9511 -10.2223 -2.0860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069581808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:37 Heat of formation + Delta-G solvation = -18.812623 kcal Electronic energy + Delta-G solvation = -27399.710755 eV Core-core repulsion = 23447.408545 eV Total energy + Delta-G solvation = -3952.302210 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.89320 -39.71013 -39.05595 -37.77709 -34.89868 -34.16679 -33.48693 -31.67602 -31.11865 -30.76237 -29.97720 -28.88707 -25.52201 -25.18762 -23.37525 -22.80449 -22.72904 -21.35395 -20.86243 -20.11322 -18.34201 -17.52065 -17.37769 -16.79578 -16.18113 -16.09573 -15.81715 -15.63622 -15.19162 -15.00874 -14.91878 -14.58346 -14.16849 -13.90928 -13.90677 -13.61122 -13.31617 -12.97541 -12.92093 -12.77606 -12.42448 -12.11151 -12.01855 -11.93879 -11.51452 -11.23263 -11.05846 -11.03793 -11.02474 -10.70389 -10.68827 -10.24202 -10.06651 -9.78850 -9.41167 -9.22291 -9.15465 -9.09472 -8.88055 -8.53889 -7.66845 -6.19371 -4.24264 1.10389 1.16706 1.20031 1.44131 2.71783 2.89940 3.20756 3.27975 3.30950 3.52072 3.55664 4.00534 4.30019 4.32895 4.60507 4.64230 4.76949 4.79066 4.89735 4.93989 4.94409 4.96870 5.13053 5.17637 5.27116 5.29898 5.30212 5.43696 5.46288 5.63393 5.74435 5.84676 5.84839 5.88594 5.96224 6.05633 6.17925 6.23325 6.28307 6.35315 6.41700 6.52779 6.62298 6.77423 7.26861 7.33481 7.51148 7.62852 7.83983 8.06117 8.13031 8.35736 8.81201 9.40831 10.92108 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.002279 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.100119 B =12282.899139 C =15077.589554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.026 3.974 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.067 3.933 13 C -0.148 4.148 14 C -0.160 4.160 15 C 0.074 3.926 16 N -0.444 5.444 17 C 0.328 3.672 18 N -0.653 5.653 19 C 0.504 3.496 20 O -0.482 6.482 21 C -0.134 4.134 22 C -0.065 4.065 23 C -0.081 4.081 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.126 4.126 27 C -0.119 4.119 28 C -0.116 4.116 29 H 0.263 0.737 30 H 0.028 0.972 31 H 0.028 0.972 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.424 0.576 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 -20.166 0.094 20.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.011 4.011 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.015 3.985 13 C -0.175 4.175 14 C -0.181 4.181 15 C -0.082 4.082 16 N -0.159 5.159 17 C 0.095 3.905 18 N -0.301 5.301 19 C 0.290 3.710 20 O -0.352 6.352 21 C -0.174 4.174 22 C -0.102 4.102 23 C -0.081 4.081 24 C -0.134 4.134 25 C -0.137 4.137 26 C -0.144 4.144 27 C -0.137 4.137 28 C -0.134 4.134 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.174 0.826 37 H 0.262 0.738 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.113 -21.577 0.093 22.426 hybrid contribution 0.837 2.440 -0.003 2.579 sum -5.277 -19.137 0.090 19.851 Atomic orbital electron populations 1.69973 1.06097 1.26985 1.49603 1.24985 0.94920 0.99434 0.94804 0.86431 0.79982 0.83193 0.77786 1.19627 1.20789 1.20795 1.20983 0.93100 0.90114 1.52386 0.92285 1.19132 0.94133 0.88928 0.98893 1.23398 0.97252 0.80306 0.99834 1.86100 1.36241 1.12907 1.87578 1.19613 0.91151 0.87153 1.00555 1.21614 0.92270 1.00357 1.03266 1.21892 1.01188 0.92542 1.02528 1.22411 0.88838 0.97875 0.99107 1.67621 1.07849 1.26927 1.13515 1.17844 0.84993 0.86914 1.00768 1.43551 1.03725 1.10624 1.72222 1.20878 0.90549 0.83011 0.76578 1.90787 1.66123 1.33920 1.44416 1.21675 0.91385 0.99091 1.05261 1.20338 0.90306 0.94922 1.04658 1.19920 0.95543 0.99380 0.93266 1.21108 0.94332 1.00268 0.97682 1.21161 0.94324 1.00071 0.98149 1.21157 0.99855 1.00717 0.92690 1.21160 0.94395 1.00071 0.98078 1.21110 0.94256 1.00264 0.97762 0.92685 0.95336 0.95348 0.92941 0.92950 0.83757 0.84807 0.82646 0.73775 0.88368 0.88379 0.90030 0.90024 0.85971 0.86125 0.86261 0.86125 0.85971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 13.29 55.43 0.74 -24.72 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 7 C -0.53 -14.03 9.11 -34.44 -0.31 -14.34 16 8 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.03 0.64 5.34 -27.88 -0.15 0.49 16 10 C 0.07 1.29 4.70 37.16 0.17 1.47 16 11 O -0.32 -5.77 9.39 -19.66 -0.18 -5.95 16 12 C 0.07 1.11 6.72 -38.91 -0.26 0.85 16 13 C -0.15 -2.16 9.14 -39.17 -0.36 -2.51 16 14 C -0.16 -1.99 10.10 -39.44 -0.40 -2.39 16 15 C 0.07 1.01 11.17 -17.55 -0.20 0.81 16 16 N -0.44 -7.38 7.88 -12.22 -0.10 -7.48 16 17 C 0.33 5.39 7.45 -154.43 -1.15 4.24 16 18 N -0.65 -9.34 5.39 -11.29 -0.06 -9.40 16 19 C 0.50 6.85 7.79 -10.99 -0.09 6.76 16 20 O -0.48 -8.12 14.24 5.56 0.08 -8.04 16 21 C -0.13 -1.29 5.68 -27.88 -0.16 -1.44 16 22 C -0.06 -0.61 4.64 -27.88 -0.13 -0.74 16 23 C -0.08 -0.74 5.13 -104.62 -0.54 -1.28 16 24 C -0.12 -1.02 9.70 -39.59 -0.38 -1.40 16 25 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 26 C -0.13 -1.01 10.05 -39.58 -0.40 -1.40 16 27 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 28 C -0.12 -1.02 9.70 -39.58 -0.38 -1.40 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 33 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 34 H 0.14 1.94 6.44 -52.49 -0.34 1.61 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 37 H 0.42 5.39 8.04 -40.82 -0.33 5.06 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 41 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 42 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 43 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -32.64 394.00 -10.72 -43.36 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.49 Total: 4.19 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -5.62 Total: -13.47 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.58 Total: -41.60 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.11 Total: -14.00 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.64 -10.72 -43.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069581808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.550 kcal (2) G-P(sol) polarization free energy of solvation -32.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds