Wall clock time and date at job start Tue Mar 31 2020 05:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.35973 * 116.99587 * 179.97438 * 11 10 9 13 13 C 1.38801 * 120.50125 * 0.02562 * 12 11 10 14 14 C 1.38775 * 118.45054 * 179.97438 * 13 12 11 15 15 C 1.38093 * 119.35013 * 359.97438 * 14 13 12 16 16 N 1.31949 * 120.95747 * 359.97438 * 15 14 13 17 17 C 1.32276 * 121.69079 * 359.70619 * 16 15 14 18 18 N 1.39581 * 119.72745 * 180.30946 * 17 16 15 19 19 C 1.34774 * 119.99990 * 0.26696 * 18 17 16 20 20 O 1.21278 * 120.00122 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99823 * 179.97438 * 19 18 17 22 22 C 1.53002 * 109.46873 * 179.97438 * 21 19 18 23 23 C 1.50707 * 109.47099 * 180.02562 * 22 21 19 24 24 C 1.38227 * 120.00173 * 269.73405 * 23 22 21 25 25 C 1.38237 * 119.99831 * 179.76675 * 24 23 22 26 26 C 1.38231 * 120.00012 * 0.50352 * 25 24 23 27 27 C 1.38236 * 120.00201 * 359.74630 * 26 25 24 28 28 C 1.38235 * 119.99690 * 0.02562 * 27 26 25 29 29 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 30 30 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 31 31 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 32 32 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 33 33 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 34 34 H 1.08002 * 120.77385 * 359.97438 * 13 12 11 35 35 H 1.07997 * 120.32294 * 180.02562 * 14 13 12 36 36 H 1.08000 * 119.51530 * 179.97438 * 15 14 13 37 37 H 0.97000 * 119.99860 * 180.26729 * 18 17 16 38 38 H 1.08995 * 109.47400 * 300.00387 * 21 19 18 39 39 H 1.09002 * 109.46923 * 60.00258 * 21 19 18 40 40 H 1.08995 * 109.47518 * 300.00430 * 22 21 19 41 41 H 1.08996 * 109.46838 * 60.00844 * 22 21 19 42 42 H 1.08000 * 120.00397 * 359.97438 * 24 23 22 43 43 H 1.08006 * 119.99670 * 180.22878 * 25 24 23 44 44 H 1.08001 * 120.00334 * 179.73270 * 26 25 24 45 45 H 1.07992 * 120.00280 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.00046 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2716 -6.0400 -0.0004 13 6 3.6582 -5.9794 -0.0009 14 6 4.3720 -7.1695 -0.0008 15 6 3.6879 -8.3690 0.0003 16 7 2.3687 -8.3981 0.0018 17 6 1.6492 -7.2881 0.0080 18 7 0.2557 -7.3666 0.0159 19 6 -0.3514 -8.5699 0.0225 20 8 0.3131 -9.5844 0.0221 21 6 -1.8560 -8.6546 0.0316 22 6 -2.2840 -10.1236 0.0372 23 6 -3.7887 -10.2084 0.0456 24 6 -4.4719 -10.2501 1.2465 25 6 -5.8523 -10.3231 1.2542 26 6 -6.5489 -10.3647 0.0610 27 6 -5.8654 -10.3281 -1.1400 28 6 -4.4852 -10.2504 -1.1477 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5568 -0.8902 31 1 0.6248 -2.5571 0.8897 32 1 2.8721 -3.6043 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 4.1698 -5.0282 -0.0013 35 1 5.4519 -7.1576 -0.0007 36 1 4.2407 -9.2968 0.0000 37 1 -0.2758 -6.5552 0.0166 38 1 -2.2425 -8.1597 0.9225 39 1 -2.2529 -8.1643 -0.8574 40 1 -1.8976 -10.6180 -0.8539 41 1 -1.8872 -10.6142 0.9259 42 1 -3.9274 -10.2224 2.1789 43 1 -6.3863 -10.3520 2.1926 44 1 -7.6271 -10.4260 0.0669 45 1 -6.4095 -10.3611 -2.0723 46 1 -3.9511 -10.2223 -2.0860 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069581808.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:36 Heat of formation + Delta-G solvation = -35.797990 kcal Electronic energy + Delta-G solvation = -27400.447296 eV Core-core repulsion = 23447.408545 eV Total energy + Delta-G solvation = -3953.038751 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.04619 -40.63476 -39.94163 -39.07658 -36.01043 -35.44915 -34.97452 -32.91105 -32.31994 -31.73525 -31.03821 -29.96807 -27.17343 -26.18243 -24.70388 -23.83955 -23.42672 -22.73984 -21.87886 -21.16863 -19.60363 -18.85361 -18.39628 -18.02016 -17.53540 -17.23634 -16.95381 -16.78024 -16.46534 -15.95612 -15.91181 -15.88943 -15.22095 -15.06521 -15.02492 -14.36068 -14.26837 -14.17736 -14.00261 -13.93090 -13.60944 -13.57994 -13.30019 -12.83409 -12.78600 -12.76965 -12.43803 -12.21981 -11.88329 -11.85826 -11.72092 -11.70975 -11.62819 -11.42306 -11.30804 -10.61634 -10.40717 -10.19263 -9.78744 -9.58514 -8.85721 -8.25899 -6.38262 0.08781 0.28635 0.45442 0.53456 1.42212 1.42692 1.55435 1.65742 1.86470 2.11321 2.44281 2.87582 2.90649 3.09514 3.34903 3.65230 3.85585 3.93701 3.95890 4.00861 4.11657 4.19630 4.23637 4.29210 4.30090 4.33302 4.37084 4.47098 4.62232 4.64555 4.69194 4.74695 4.94749 4.96774 5.06890 5.13752 5.21344 5.21747 5.29586 5.31489 5.50478 5.53434 5.61175 5.66566 5.73638 5.75242 6.07906 6.15820 6.21273 6.33339 6.76875 6.94123 7.27252 7.31842 8.86939 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008986 B = 0.002279 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3115.100119 B =12282.899139 C =15077.589554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.970 3.030 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.071 0.929 9 C 0.030 3.970 10 C 0.084 3.916 11 O -0.328 6.328 12 C 0.040 3.960 13 C -0.150 4.150 14 C -0.146 4.146 15 C 0.073 3.927 16 N -0.473 5.473 17 C 0.310 3.690 18 N -0.654 5.654 19 C 0.503 3.497 20 O -0.518 6.518 21 C -0.124 4.124 22 C -0.056 4.056 23 C -0.091 4.091 24 C -0.128 4.128 25 C -0.127 4.127 26 C -0.132 4.132 27 C -0.127 4.127 28 C -0.128 4.128 29 H 0.266 0.734 30 H 0.002 0.998 31 H 0.002 0.998 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.156 0.844 35 H 0.175 0.825 36 H 0.186 0.814 37 H 0.428 0.572 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.129 0.871 43 H 0.138 0.862 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.419 -20.210 0.101 20.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.195 4.195 3 Si 0.794 3.206 4 H -0.182 1.182 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.089 0.911 9 C -0.008 4.008 10 C 0.009 3.991 11 O -0.242 6.242 12 C -0.011 4.011 13 C -0.176 4.176 14 C -0.166 4.166 15 C -0.084 4.084 16 N -0.189 5.189 17 C 0.078 3.922 18 N -0.302 5.302 19 C 0.291 3.709 20 O -0.391 6.391 21 C -0.163 4.163 22 C -0.094 4.094 23 C -0.091 4.091 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.150 4.150 27 C -0.145 4.145 28 C -0.146 4.146 29 H 0.075 0.925 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.174 0.826 35 H 0.193 0.807 36 H 0.203 0.797 37 H 0.267 0.733 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.147 0.853 43 H 0.156 0.844 44 H 0.157 0.843 45 H 0.156 0.844 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.826 -21.628 0.099 22.160 hybrid contribution 0.462 2.323 -0.005 2.369 sum -4.364 -19.305 0.094 19.792 Atomic orbital electron populations 1.70105 1.07880 1.28059 1.50783 1.25960 0.95772 1.03443 0.94356 0.85317 0.79172 0.78336 0.77733 1.18152 1.20463 1.20474 1.21428 0.93866 0.91043 1.51767 0.91113 1.18951 0.94525 0.90993 0.96307 1.22953 0.95613 0.79639 1.00858 1.86026 1.36610 1.13010 1.88521 1.19771 0.92159 0.86290 1.02835 1.21909 0.91506 1.01829 1.02367 1.22275 1.03055 0.91080 1.00226 1.23060 0.88157 0.99753 0.97428 1.67684 1.09447 1.27180 1.14572 1.18069 0.85838 0.86991 1.01334 1.43681 1.03416 1.11145 1.72004 1.21531 0.91885 0.82208 0.75266 1.90755 1.67237 1.34905 1.46170 1.21686 0.88403 0.99608 1.06648 1.20217 0.90804 0.94555 1.03813 1.19910 0.95069 1.00362 0.93801 1.21298 0.94934 1.00482 0.97881 1.21443 0.94222 0.99665 0.99170 1.21480 1.01024 1.00004 0.92524 1.21442 0.94301 0.99666 0.99092 1.21300 0.94851 1.00480 0.97968 0.92527 0.97976 0.97983 0.91824 0.91832 0.82618 0.80748 0.79702 0.73301 0.86853 0.86866 0.90889 0.90880 0.85265 0.84407 0.84303 0.84409 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.22 13.29 21.45 0.28 -53.93 16 2 C 0.00 0.19 5.46 84.65 0.46 0.65 16 3 Si 0.97 41.90 29.54 68.60 2.03 43.92 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.54 -28.92 9.11 25.60 0.23 -28.69 16 8 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 9 C 0.03 1.48 5.34 29.85 0.16 1.64 16 10 C 0.08 3.26 4.70 71.98 0.34 3.60 16 11 O -0.33 -12.17 9.39 -93.25 -0.88 -13.04 16 12 C 0.04 1.32 6.72 22.70 0.15 1.47 16 13 C -0.15 -4.06 9.14 22.53 0.21 -3.86 16 14 C -0.15 -3.18 10.10 22.36 0.23 -2.96 16 15 C 0.07 1.82 11.17 84.64 0.95 2.77 16 16 N -0.47 -15.54 7.88 -192.58 -1.52 -17.05 16 17 C 0.31 10.27 7.45 132.98 0.99 11.26 16 18 N -0.65 -19.22 5.39 -308.03 -1.66 -20.88 16 19 C 0.50 14.00 7.79 87.66 0.68 14.68 16 20 O -0.52 -17.90 14.24 -3.02 -0.04 -17.95 16 21 C -0.12 -2.39 5.68 29.85 0.17 -2.22 16 22 C -0.06 -1.09 4.64 29.85 0.14 -0.95 16 23 C -0.09 -1.66 5.13 -19.86 -0.10 -1.77 16 24 C -0.13 -2.19 9.70 22.27 0.22 -1.97 16 25 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 26 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 27 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 28 C -0.13 -2.19 9.70 22.27 0.22 -1.98 16 29 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 30 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.06 2.32 7.70 -2.39 -0.02 2.30 16 33 H 0.06 2.31 7.70 -2.39 -0.02 2.30 16 34 H 0.16 3.81 6.44 -2.91 -0.02 3.79 16 35 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.43 11.35 8.04 -92.71 -0.75 10.61 16 38 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.07 1.52 8.04 -2.39 -0.02 1.50 16 41 H 0.07 1.52 8.04 -2.39 -0.02 1.50 16 42 H 0.13 1.92 8.06 -2.91 -0.02 1.89 16 43 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 45 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 46 H 0.13 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -71.61 394.00 4.17 -67.44 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.25 Total: 24.96 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 5.71 Total: -13.46 kcal Atomic # 7 Polarization: -88.97 SS G_CDS: -2.89 Total: -91.87 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -0.92 Total: -30.99 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -71.61 4.17 -67.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069581808.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.645 kcal (2) G-P(sol) polarization free energy of solvation -71.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds