Wall clock time and date at job start Tue Mar 31 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31717 * 1 3 3 Si 1.86801 * 120.00240 * 2 1 4 4 H 1.48497 * 109.47260 * 240.00428 * 3 2 1 5 5 H 1.48508 * 109.47009 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47469 * 120.00045 * 3 2 1 7 7 C 1.38546 * 120.00328 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00071 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.76199 * 99.99948 * 179.97438 * 9 7 2 11 11 N 1.31216 * 126.44679 * 0.02562 * 10 9 7 12 12 N 1.28516 * 109.98929 * 179.97438 * 11 10 9 13 13 C 1.31248 * 110.05353 * 359.72444 * 12 11 10 14 14 N 1.38532 * 126.40167 * 180.31278 * 13 12 11 15 15 C 1.47012 * 111.00156 * 68.79147 * 14 13 12 16 16 C 1.53100 * 109.25812 * 177.60791 * 15 14 13 17 17 O 1.43018 * 109.25734 * 56.85162 * 16 15 14 18 18 C 1.43011 * 113.73615 * 301.32163 * 17 16 15 19 19 C 1.47013 * 111.00314 * 305.15567 * 14 13 12 20 20 N 1.36796 * 107.19715 * 0.43616 * 13 12 11 21 21 C 1.46506 * 127.17284 * 179.83961 * 20 13 12 22 22 C 1.52991 * 109.47057 * 264.50211 * 21 20 13 23 23 H 1.09007 * 110.27597 * 304.36200 * 22 21 20 24 24 C 1.55499 * 110.36674 * 182.25331 * 22 21 20 25 25 C 1.55307 * 100.69766 * 204.60665 * 24 22 21 26 26 C 1.54381 * 102.43163 * 34.12876 * 25 24 22 27 27 O 1.43237 * 107.59148 * 338.54259 * 26 25 24 28 28 H 0.96998 * 120.00027 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.50561 * 297.54306 * 15 14 13 30 30 H 1.08999 * 109.50785 * 57.67051 * 15 14 13 31 31 H 1.08998 * 109.50985 * 296.90807 * 16 15 14 32 32 H 1.09002 * 109.54015 * 176.80316 * 16 15 14 33 33 H 1.08997 * 109.51171 * 298.74301 * 18 17 16 34 34 H 1.08999 * 109.54185 * 178.62922 * 18 17 16 35 35 H 1.09002 * 109.50743 * 302.33207 * 19 14 13 36 36 H 1.09007 * 109.50659 * 62.41353 * 19 14 13 37 37 H 1.08998 * 109.47019 * 144.49952 * 21 20 13 38 38 H 1.09000 * 109.46797 * 24.50435 * 21 20 13 39 39 H 1.09005 * 111.33441 * 86.73408 * 24 22 21 40 40 H 1.08998 * 111.15182 * 322.40538 * 24 22 21 41 41 H 1.08999 * 110.84580 * 275.83615 * 25 24 22 42 42 H 1.09001 * 110.84807 * 152.42212 * 25 24 22 43 43 H 1.09005 * 109.82719 * 98.05790 * 26 25 24 44 44 H 1.09005 * 109.82838 * 218.93597 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3172 0.0000 0.0000 3 14 2.2512 1.6177 0.0000 4 1 3.1049 1.6964 -1.2125 5 1 1.2862 2.7465 0.0006 6 1 3.1050 1.6964 1.2125 7 6 2.0100 -1.1998 -0.0005 8 1 3.0900 -1.1998 -0.0010 9 16 1.1290 -2.7257 -0.0005 10 6 2.4787 -3.8583 -0.0021 11 7 3.7543 -3.5508 -0.0025 12 7 4.4645 -4.6220 -0.0031 13 6 3.6856 -5.6783 0.0027 14 7 4.0951 -7.0017 0.0101 15 6 4.7252 -7.3511 1.2915 16 6 5.1075 -8.8336 1.2786 17 8 5.9677 -9.0891 0.1649 18 6 5.3854 -8.7608 -1.0994 19 6 5.0058 -7.2776 -1.1105 20 7 2.3937 -5.2283 -0.0026 21 6 1.1738 -6.0395 -0.0024 22 6 0.6764 -6.2128 -1.4388 23 1 0.5316 -5.2398 -1.9084 24 6 -0.6502 -7.0237 -1.4581 25 6 -0.6070 -7.6133 -2.8942 26 6 0.9035 -7.8461 -3.1125 27 8 1.6087 -6.9989 -2.1979 28 1 -0.4850 0.8400 0.0004 29 1 5.6202 -6.7456 1.4341 30 1 4.0244 -7.1631 2.1049 31 1 4.2069 -9.4410 1.1899 32 1 5.6261 -9.0844 2.2040 33 1 4.4928 -9.3661 -1.2573 34 1 6.1045 -8.9584 -1.8943 35 1 4.5099 -7.0359 -2.0506 36 1 5.9051 -6.6704 -1.0068 37 1 0.4064 -5.5415 0.5902 38 1 1.3879 -7.0176 0.4285 39 1 -1.5148 -6.3729 -1.3265 40 1 -0.6386 -7.8147 -0.7082 41 1 -0.9981 -6.8990 -3.6187 42 1 -1.1557 -8.5538 -2.9442 43 1 1.1492 -8.8895 -2.9147 44 1 1.1726 -7.5909 -4.1376 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069592577.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:21 Heat of formation + Delta-G solvation = -1.441437 kcal Electronic energy + Delta-G solvation = -28526.544444 eV Core-core repulsion = 24606.899113 eV Total energy + Delta-G solvation = -3919.645331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.136 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.04331 -39.45482 -39.36389 -35.65647 -34.58437 -32.63637 -32.20733 -31.27521 -30.12124 -29.52182 -26.81918 -25.76791 -25.54519 -24.07057 -22.30768 -21.81292 -21.62269 -20.94951 -19.97124 -17.98887 -17.48510 -16.77138 -16.42242 -16.12031 -15.96355 -15.42627 -15.30530 -15.08673 -14.91872 -14.83368 -14.54231 -14.30209 -13.93815 -13.52908 -13.04844 -13.02600 -12.50319 -12.36094 -11.94857 -11.74532 -11.59692 -11.43081 -11.40303 -11.28906 -11.11316 -11.10833 -10.99349 -10.82573 -10.58569 -10.25410 -10.09585 -9.79979 -9.74756 -9.60423 -9.29594 -8.94883 -8.76860 -8.48083 -6.74086 -6.45684 -4.19643 2.29422 2.38703 3.12423 3.23504 3.24077 3.31712 3.56612 3.66847 3.74857 3.98449 4.02575 4.33459 4.58995 4.74261 4.79700 4.90202 4.94507 4.98256 5.03219 5.04992 5.08968 5.16208 5.17113 5.24513 5.36994 5.44649 5.45861 5.53837 5.57068 5.61175 5.65416 5.72432 5.79418 5.84266 5.85045 6.01319 6.11287 6.19807 6.65256 6.76804 6.91173 7.01376 7.02678 7.58458 7.73009 8.38614 9.06804 9.47824 10.62656 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.004056 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.218602 B = 6901.035776 C = 8682.122095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.076 3.924 3 Si 0.932 3.068 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.529 4.529 8 H 0.104 0.896 9 S 0.130 5.870 10 C 0.173 3.827 11 N -0.300 5.300 12 N -0.310 5.310 13 C 0.319 3.681 14 N -0.448 5.448 15 C 0.026 3.974 16 C 0.069 3.931 17 O -0.386 6.386 18 C 0.068 3.932 19 C 0.036 3.964 20 N -0.459 5.459 21 C 0.122 3.878 22 C 0.066 3.934 23 H 0.084 0.916 24 C -0.146 4.146 25 C -0.154 4.154 26 C 0.051 3.949 27 O -0.364 6.364 28 H 0.274 0.726 29 H 0.058 0.942 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.100 0.900 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.066 0.934 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.108 -19.961 -2.211 20.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.133 4.133 3 Si 0.757 3.243 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.677 4.677 8 H 0.122 0.878 9 S 0.361 5.639 10 C -0.199 4.199 11 N -0.145 5.145 12 N -0.154 5.154 13 C -0.041 4.041 14 N -0.174 5.174 15 C -0.102 4.102 16 C -0.008 4.008 17 O -0.304 6.304 18 C -0.009 4.009 19 C -0.091 4.091 20 N -0.156 5.156 21 C -0.002 4.002 22 C 0.008 3.992 23 H 0.102 0.898 24 C -0.184 4.184 25 C -0.192 4.192 26 C -0.025 4.025 27 O -0.283 6.283 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.084 0.916 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.211 -19.527 -2.227 19.690 hybrid contribution 0.636 0.984 -0.049 1.173 sum -0.575 -18.542 -2.277 18.690 Atomic orbital electron populations 1.69968 1.05969 1.28428 1.47236 1.25028 0.95187 0.99523 0.93570 0.85988 0.79061 0.79723 0.79511 1.19474 1.20818 1.19475 1.23109 0.97132 0.89071 1.58434 0.87837 1.83310 0.97756 0.95534 1.87304 1.28258 1.02263 0.84943 1.04422 1.74605 0.99124 1.18455 1.22323 1.74310 1.27141 0.95199 1.18761 1.21918 0.82215 0.90977 1.08957 1.58593 1.40871 1.13864 1.04044 1.22856 0.99180 0.97320 0.90832 1.22652 0.94581 0.93662 0.89937 1.87973 1.41929 1.85814 1.14687 1.22682 0.98609 0.93653 0.85948 1.22735 0.95340 0.97040 0.94024 1.45985 1.06379 1.05622 1.57603 1.21876 0.85326 0.96325 0.96645 1.23478 0.88064 0.95966 0.91719 0.89774 1.23322 0.97796 1.00015 0.97312 1.23091 0.96876 1.02035 0.97189 1.23075 0.90918 0.94759 0.93790 1.88533 1.31115 1.55623 1.53067 0.91673 0.92356 0.89858 0.92299 0.88210 0.92215 0.88241 0.89154 0.92421 0.87808 0.88172 0.89148 0.90104 0.90397 0.90109 0.91616 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.38 13.22 55.48 0.73 -23.64 16 2 C 0.08 2.06 5.49 -17.49 -0.10 1.96 16 3 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.53 -14.82 9.37 30.85 0.29 -14.53 16 8 H 0.10 3.02 6.92 -52.49 -0.36 2.66 16 9 S 0.13 3.18 21.54 -107.50 -2.32 0.87 16 10 C 0.17 4.04 8.07 -87.71 -0.71 3.33 16 11 N -0.30 -7.68 11.02 30.81 0.34 -7.34 16 12 N -0.31 -7.16 12.05 30.38 0.37 -6.80 16 13 C 0.32 6.17 6.52 -318.43 -2.08 4.10 16 14 N -0.45 -6.86 4.72 -174.10 -0.82 -7.69 16 15 C 0.03 0.35 5.58 -3.71 -0.02 0.33 16 16 C 0.07 0.73 7.01 37.21 0.26 0.99 16 17 O -0.39 -4.73 10.83 -35.23 -0.38 -5.11 16 18 C 0.07 0.76 7.01 37.21 0.26 1.02 16 19 C 0.04 0.52 5.51 -3.71 -0.02 0.50 16 20 N -0.46 -8.81 2.81 -117.26 -0.33 -9.14 16 21 C 0.12 1.77 5.73 -4.04 -0.02 1.75 16 22 C 0.07 0.90 3.69 -25.41 -0.09 0.80 16 23 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 24 C -0.15 -1.38 6.61 -24.18 -0.16 -1.54 16 25 C -0.15 -1.31 7.00 -24.78 -0.17 -1.49 16 26 C 0.05 0.53 7.80 37.88 0.30 0.82 16 27 O -0.36 -5.15 11.02 -35.23 -0.39 -5.54 16 28 H 0.27 7.09 8.32 -40.82 -0.34 6.75 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 37 H 0.10 1.41 8.04 -51.93 -0.42 0.99 16 38 H 0.10 1.28 8.11 -51.93 -0.42 0.86 16 39 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 376.83 15.07 5.68 5.68 Total: -1.00 -33.29 376.83 -11.08 -44.37 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -6.67 Total: -0.09 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: -2.27 Total: -1.96 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: 0.29 Total: -54.60 kcal Atomic # 8 Polarization: -9.88 SS G_CDS: -0.77 Total: -10.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -2.32 Total: 0.87 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -33.29 -11.08 -44.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069592577.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.929 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds