Wall clock time and date at job start Tue Mar 31 2020 05:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65594 * 120.00144 * 2 1 4 4 O 1.42104 * 106.40514 * 178.54482 * 3 2 1 5 5 O 1.42099 * 106.40406 * 311.46496 * 3 2 1 6 6 C 1.76196 * 107.21769 * 65.00363 * 3 2 1 7 7 C 1.38359 * 119.85678 * 269.72343 * 6 3 2 8 8 C 1.37956 * 120.14501 * 179.72235 * 7 6 3 9 9 C 1.39578 * 119.85504 * 0.55086 * 8 7 6 10 10 C 1.47847 * 120.14469 * 179.70663 * 9 8 7 11 11 O 1.21551 * 120.00082 * 137.51912 * 10 9 8 12 12 N 1.34773 * 119.99859 * 317.51050 * 10 9 8 13 13 C 1.46495 * 120.00242 * 212.31677 * 12 10 9 14 14 C 1.50706 * 109.46875 * 90.00479 * 13 12 10 15 15 H 1.07998 * 119.99983 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00280 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99493 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00189 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47124 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47121 * 120.00003 * 18 16 14 21 21 H 1.48500 * 109.46812 * 240.00068 * 18 16 14 22 22 C 1.46512 * 119.99998 * 32.32476 * 12 10 9 23 23 C 1.53006 * 109.46622 * 301.60572 * 22 12 10 24 24 C 1.52994 * 109.46939 * 61.60698 * 22 12 10 25 25 C 1.39571 * 119.71004 * 359.72365 * 9 8 7 26 26 C 1.37962 * 119.85287 * 0.02562 * 25 9 8 27 27 H 1.08997 * 109.46423 * 299.99738 * 1 2 3 28 28 H 1.08999 * 109.47231 * 59.99068 * 1 2 3 29 29 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 30 30 H 0.97002 * 119.99862 * 180.02562 * 2 1 3 31 31 H 1.08000 * 119.92466 * 0.02562 * 7 6 3 32 32 H 1.08008 * 120.07089 * 180.25566 * 8 7 6 33 33 H 1.09000 * 109.47520 * 210.00017 * 13 12 10 34 34 H 1.09000 * 109.47271 * 330.00661 * 13 12 10 35 35 H 0.96998 * 119.99975 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.46957 * 181.60512 * 22 12 10 37 37 H 1.08999 * 109.47158 * 13.48420 * 23 22 12 38 38 H 1.09002 * 109.46419 * 133.48456 * 23 22 12 39 39 H 1.09000 * 109.46662 * 253.48145 * 23 22 12 40 40 H 1.09000 * 109.47600 * 103.64951 * 24 22 12 41 41 H 1.09001 * 109.46907 * 223.64808 * 24 22 12 42 42 H 1.09005 * 109.47613 * 343.64539 * 24 22 12 43 43 H 1.08003 * 120.07697 * 179.97438 * 25 9 8 44 44 H 1.07998 * 119.92793 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6739 1.1002 0.0346 5 8 1.7120 2.2329 -1.0215 6 6 1.9379 2.2413 1.5254 7 6 0.8607 3.1051 1.6131 8 6 0.5738 3.7360 2.8060 9 6 1.3799 3.5101 3.9228 10 6 1.0822 4.1878 5.2026 11 8 1.1523 3.5710 6.2477 12 7 0.7331 5.4895 5.2106 13 6 1.1071 6.3413 6.3423 14 6 2.4538 6.9641 6.0786 15 1 2.9784 6.7475 5.1598 16 6 3.0163 7.8106 7.0105 17 7 2.3772 8.0748 8.1291 18 14 4.6859 8.5821 6.6840 19 1 5.1917 8.1274 5.3639 20 1 4.5558 10.0613 6.6820 21 1 5.6377 8.1702 7.7468 22 6 -0.0205 6.0527 4.0874 23 6 0.7725 5.8593 2.7933 24 6 -1.3695 5.3407 3.9704 25 6 2.4685 2.6419 3.8261 26 6 2.7413 2.0134 2.6286 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.9500 -0.8401 -0.0004 31 1 0.2401 3.2822 0.7470 32 1 -0.2699 4.4069 2.8742 33 1 0.3619 7.1268 6.4677 34 1 1.1566 5.7391 7.2495 35 1 2.7729 8.6700 8.7848 36 1 -0.1848 7.1168 4.2574 37 1 1.5817 5.1497 2.9656 38 1 0.1115 5.4751 2.0163 39 1 1.1888 6.8154 2.4760 40 1 -2.1557 5.9846 4.3645 41 1 -1.5732 5.1182 2.9229 42 1 -1.3409 4.4118 4.5401 43 1 3.0964 2.4631 4.6864 44 1 3.5835 1.3417 2.5523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069599952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:34 Heat of formation + Delta-G solvation = 2.472125 kcal Electronic energy + Delta-G solvation = -28474.634701 eV Core-core repulsion = 24522.866324 eV Total energy + Delta-G solvation = -3951.768377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.15778 -38.12942 -37.43394 -36.61924 -36.04180 -35.30609 -33.57501 -31.99877 -31.40074 -30.47681 -27.38963 -26.97360 -26.33390 -24.52209 -23.29497 -22.42069 -21.79675 -19.89093 -18.73946 -18.30004 -17.75312 -16.68839 -16.58607 -16.36126 -16.03861 -15.53740 -15.14742 -14.97942 -14.59159 -14.25977 -14.21507 -14.07909 -13.87916 -13.52519 -13.17681 -13.13286 -12.72253 -12.44547 -12.35853 -12.27952 -12.17325 -12.06364 -11.91741 -11.89484 -11.32779 -11.24046 -11.11253 -11.05152 -10.91984 -10.69900 -10.37946 -10.21464 -9.95983 -9.72763 -9.36622 -9.20573 -8.54339 -8.46987 -7.74750 -6.14720 -4.21613 0.14973 0.53593 1.29297 2.69244 2.95034 3.23294 3.31473 3.34766 3.44338 3.58867 3.77748 4.15403 4.34999 4.65167 4.67604 4.70732 4.80787 4.88452 5.08753 5.09398 5.18391 5.19586 5.27676 5.36277 5.38051 5.46214 5.57562 5.64184 5.68702 5.75769 5.83628 5.93494 6.03238 6.10089 6.22453 6.27869 6.44512 6.56920 6.70113 6.96341 7.29730 7.45317 7.82148 8.10119 8.21617 8.60752 8.86697 9.44857 10.92609 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.003303 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.461399 B = 8475.569996 C = 9089.810006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -1.121 6.121 3 S 2.699 3.301 4 O -0.960 6.960 5 O -0.957 6.957 6 C -0.659 4.659 7 C -0.069 4.069 8 C -0.112 4.112 9 C -0.083 4.083 10 C 0.564 3.436 11 O -0.523 6.523 12 N -0.604 5.604 13 C 0.248 3.752 14 C -0.537 4.537 15 H 0.060 0.940 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.898 3.102 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.134 3.866 23 C -0.203 4.203 24 C -0.181 4.181 25 C -0.085 4.085 26 C -0.040 4.040 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.418 0.582 31 H 0.141 0.859 32 H 0.184 0.816 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.139 0.861 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.562 -13.725 -16.501 22.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.881 5.881 3 S 2.788 3.212 4 O -0.950 6.950 5 O -0.947 6.947 6 C -0.747 4.747 7 C -0.088 4.088 8 C -0.130 4.130 9 C -0.087 4.087 10 C 0.351 3.649 11 O -0.400 6.400 12 N -0.336 5.336 13 C 0.129 3.871 14 C -0.575 4.575 15 H 0.078 0.922 16 C -0.139 4.139 17 N -0.529 5.529 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.029 3.971 23 C -0.259 4.259 24 C -0.238 4.238 25 C -0.105 4.105 26 C -0.059 4.059 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.252 0.748 31 H 0.159 0.841 32 H 0.200 0.800 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.157 0.843 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.114 -13.440 -16.395 22.361 hybrid contribution 0.976 0.396 0.662 1.244 sum -6.138 -13.043 -15.733 21.339 Atomic orbital electron populations 1.21513 0.78393 1.04259 1.02234 1.55322 1.16254 1.24394 1.92131 1.01759 0.72820 0.72672 0.73966 1.93598 1.30765 1.83377 1.87243 1.93581 1.78718 1.68329 1.54034 1.30795 1.07189 1.15522 1.21152 1.20710 0.95242 0.94655 0.98179 1.23169 1.01940 0.95861 0.91999 1.20762 0.96285 0.96506 0.95115 1.18029 0.76948 0.82388 0.87536 1.90733 1.51033 1.64414 1.33794 1.48076 1.54846 1.08343 1.22359 1.19394 0.95362 0.88871 0.83461 1.21542 1.03565 1.27877 1.04547 0.92217 1.24944 0.97895 0.96305 0.94802 1.69942 1.38405 1.36291 1.08294 0.86447 0.83706 0.78917 0.78431 1.19705 1.20810 1.20797 1.21080 0.89829 0.99699 0.86490 1.23765 1.01866 1.03315 0.96940 1.22729 0.97913 1.01753 1.01410 1.21326 0.96555 0.94442 0.98175 1.20753 0.96907 0.97204 0.91054 0.91886 0.91279 0.89940 0.74779 0.84096 0.80007 0.94708 0.93614 0.92608 0.88124 0.89037 0.90967 0.91935 0.91185 0.91135 0.91669 0.84276 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.44 11.14 59.85 0.67 1.10 16 2 N -1.12 -7.71 6.19 -16.63 -0.10 -7.81 16 3 S 2.70 28.62 5.74 -107.50 -0.62 28.00 16 4 O -0.96 -12.78 17.27 -57.17 -0.99 -13.77 16 5 O -0.96 -12.35 16.99 -57.17 -0.97 -13.32 16 6 C -0.66 -7.79 5.95 -39.49 -0.24 -8.03 16 7 C -0.07 -0.79 9.24 -39.64 -0.37 -1.15 16 8 C -0.11 -1.47 4.88 -39.19 -0.19 -1.66 16 9 C -0.08 -1.37 4.26 -104.97 -0.45 -1.82 16 10 C 0.56 11.60 5.87 -12.33 -0.07 11.52 16 11 O -0.52 -12.59 16.79 5.32 0.09 -12.50 16 12 N -0.60 -12.33 2.38 -168.57 -0.40 -12.73 16 13 C 0.25 6.24 5.32 -5.19 -0.03 6.21 16 14 C -0.54 -14.61 9.39 -34.44 -0.32 -14.93 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -25.74 13.29 55.43 0.74 -25.00 16 18 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 C 0.13 2.07 3.27 -67.92 -0.22 1.85 16 23 C -0.20 -2.82 7.72 37.16 0.29 -2.53 16 24 C -0.18 -2.15 8.36 37.15 0.31 -1.84 16 25 C -0.09 -1.31 9.67 -39.19 -0.38 -1.69 16 26 C -0.04 -0.51 9.50 -39.64 -0.38 -0.89 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.42 2.03 8.96 -34.47 -0.31 1.72 16 31 H 0.14 1.26 7.60 -52.49 -0.40 0.86 16 32 H 0.18 2.10 1.07 -53.67 -0.06 2.04 16 33 H 0.03 0.89 7.93 -51.93 -0.41 0.47 16 34 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 35 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.10 1.58 7.81 -51.93 -0.41 1.18 16 37 H 0.09 1.46 3.99 -61.53 -0.25 1.22 16 38 H 0.07 0.76 5.23 -51.93 -0.27 0.49 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.61 6.18 -51.93 -0.32 0.29 16 42 H 0.06 0.87 6.82 -51.93 -0.35 0.52 16 43 H 0.14 2.15 8.06 -52.48 -0.42 1.73 16 44 H 0.14 1.53 7.60 -52.49 -0.40 1.13 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -36.03 364.91 -8.88 -44.91 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.64 Total: 2.61 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.47 Total: -12.19 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 0.23 Total: -45.54 kcal Atomic # 8 Polarization: -37.72 SS G_CDS: -1.87 Total: -39.59 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 28.62 SS G_CDS: -0.62 Total: 28.00 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.03 -8.88 -44.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.385 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds