Wall clock time and date at job start Tue Mar 31 2020 05:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 S 1.65594 * 120.00144 * 2 1 4 4 O 1.42104 * 106.40514 * 178.54482 * 3 2 1 5 5 O 1.42099 * 106.40406 * 311.46496 * 3 2 1 6 6 C 1.76196 * 107.21769 * 65.00363 * 3 2 1 7 7 C 1.38359 * 119.85678 * 269.72343 * 6 3 2 8 8 C 1.37956 * 120.14501 * 179.72235 * 7 6 3 9 9 C 1.39578 * 119.85504 * 0.55086 * 8 7 6 10 10 C 1.47847 * 120.14469 * 179.70663 * 9 8 7 11 11 O 1.21551 * 120.00082 * 137.51912 * 10 9 8 12 12 N 1.34773 * 119.99859 * 317.51050 * 10 9 8 13 13 C 1.46495 * 120.00242 * 212.31677 * 12 10 9 14 14 C 1.50706 * 109.46875 * 90.00479 * 13 12 10 15 15 H 1.07998 * 119.99983 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00280 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99493 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00189 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47124 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47121 * 120.00003 * 18 16 14 21 21 H 1.48500 * 109.46812 * 240.00068 * 18 16 14 22 22 C 1.46512 * 119.99998 * 32.32476 * 12 10 9 23 23 C 1.53006 * 109.46622 * 301.60572 * 22 12 10 24 24 C 1.52994 * 109.46939 * 61.60698 * 22 12 10 25 25 C 1.39571 * 119.71004 * 359.72365 * 9 8 7 26 26 C 1.37962 * 119.85287 * 0.02562 * 25 9 8 27 27 H 1.08997 * 109.46423 * 299.99738 * 1 2 3 28 28 H 1.08999 * 109.47231 * 59.99068 * 1 2 3 29 29 H 1.08997 * 109.47290 * 179.97438 * 1 2 3 30 30 H 0.97002 * 119.99862 * 180.02562 * 2 1 3 31 31 H 1.08000 * 119.92466 * 0.02562 * 7 6 3 32 32 H 1.08008 * 120.07089 * 180.25566 * 8 7 6 33 33 H 1.09000 * 109.47520 * 210.00017 * 13 12 10 34 34 H 1.09000 * 109.47271 * 330.00661 * 13 12 10 35 35 H 0.96998 * 119.99975 * 179.97438 * 17 16 14 36 36 H 1.09001 * 109.46957 * 181.60512 * 22 12 10 37 37 H 1.08999 * 109.47158 * 13.48420 * 23 22 12 38 38 H 1.09002 * 109.46419 * 133.48456 * 23 22 12 39 39 H 1.09000 * 109.46662 * 253.48145 * 23 22 12 40 40 H 1.09000 * 109.47600 * 103.64951 * 24 22 12 41 41 H 1.09001 * 109.46907 * 223.64808 * 24 22 12 42 42 H 1.09005 * 109.47613 * 343.64539 * 24 22 12 43 43 H 1.08003 * 120.07697 * 179.97438 * 25 9 8 44 44 H 1.07998 * 119.92793 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 3.6739 1.1002 0.0346 5 8 1.7120 2.2329 -1.0215 6 6 1.9379 2.2413 1.5254 7 6 0.8607 3.1051 1.6131 8 6 0.5738 3.7360 2.8060 9 6 1.3799 3.5101 3.9228 10 6 1.0822 4.1878 5.2026 11 8 1.1523 3.5710 6.2477 12 7 0.7331 5.4895 5.2106 13 6 1.1071 6.3413 6.3423 14 6 2.4538 6.9641 6.0786 15 1 2.9784 6.7475 5.1598 16 6 3.0163 7.8106 7.0105 17 7 2.3772 8.0748 8.1291 18 14 4.6859 8.5821 6.6840 19 1 5.1917 8.1274 5.3639 20 1 4.5558 10.0613 6.6820 21 1 5.6377 8.1702 7.7468 22 6 -0.0205 6.0527 4.0874 23 6 0.7725 5.8593 2.7933 24 6 -1.3695 5.3407 3.9704 25 6 2.4685 2.6419 3.8261 26 6 2.7413 2.0134 2.6286 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.9500 -0.8401 -0.0004 31 1 0.2401 3.2822 0.7470 32 1 -0.2699 4.4069 2.8742 33 1 0.3619 7.1268 6.4677 34 1 1.1566 5.7391 7.2495 35 1 2.7729 8.6700 8.7848 36 1 -0.1848 7.1168 4.2574 37 1 1.5817 5.1497 2.9656 38 1 0.1115 5.4751 2.0163 39 1 1.1888 6.8154 2.4760 40 1 -2.1557 5.9846 4.3645 41 1 -1.5732 5.1182 2.9229 42 1 -1.3409 4.4118 4.5401 43 1 3.0964 2.4631 4.6864 44 1 3.5835 1.3417 2.5523 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069599952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:34 Heat of formation + Delta-G solvation = -24.972979 kcal Electronic energy + Delta-G solvation = -28475.824810 eV Core-core repulsion = 24522.866324 eV Total energy + Delta-G solvation = -3952.958486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44174 -39.49434 -38.36654 -38.04099 -36.97471 -35.84846 -35.45669 -33.68761 -32.54725 -31.65589 -29.28123 -28.05069 -26.78174 -26.06464 -24.42547 -24.13815 -23.01830 -20.76417 -20.03473 -19.21648 -18.71966 -18.59488 -17.79180 -17.69014 -17.17306 -16.61216 -16.50974 -16.46205 -15.91003 -15.47910 -15.39060 -15.06696 -14.94158 -14.56861 -14.31815 -14.21330 -13.79759 -13.75773 -13.68880 -13.62081 -13.24391 -13.22746 -13.13359 -13.08117 -12.81106 -12.56399 -12.49219 -12.30095 -12.22443 -12.15685 -12.09208 -11.71004 -11.41092 -10.98218 -10.70429 -10.49287 -10.35795 -9.55421 -9.43629 -8.27776 -6.44305 -0.75195 -0.50256 0.25168 1.33478 1.34329 1.39858 1.48464 1.97144 2.16412 2.35186 2.44067 2.75778 3.01457 3.27068 3.39815 3.69915 3.75145 3.82771 4.04123 4.11460 4.23317 4.29275 4.33532 4.48049 4.57494 4.59146 4.75057 4.80263 4.82072 4.87355 4.93049 4.95385 4.98677 4.99241 5.07985 5.13383 5.14487 5.19776 5.38219 5.53076 5.65807 5.81707 5.98780 6.13100 6.58931 6.66361 7.03801 7.28600 8.78839 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016609 B = 0.003303 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.461399 B = 8475.569996 C = 9089.810006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -1.108 6.108 3 S 2.723 3.277 4 O -0.988 6.988 5 O -0.974 6.974 6 C -0.653 4.653 7 C -0.059 4.059 8 C -0.101 4.101 9 C -0.108 4.108 10 C 0.559 3.441 11 O -0.578 6.578 12 N -0.609 5.609 13 C 0.263 3.737 14 C -0.548 4.548 15 H 0.056 0.944 16 C 0.012 3.988 17 N -0.925 5.925 18 Si 0.966 3.034 19 H -0.268 1.268 20 H -0.269 1.269 21 H -0.280 1.280 22 C 0.122 3.878 23 C -0.202 4.202 24 C -0.176 4.176 25 C -0.103 4.103 26 C -0.041 4.041 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.430 0.570 31 H 0.180 0.820 32 H 0.200 0.800 33 H 0.026 0.974 34 H -0.001 1.001 35 H 0.268 0.732 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.116 0.884 42 H 0.048 0.952 43 H 0.122 0.878 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.322 -14.293 -20.235 26.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.872 5.872 3 S 2.811 3.189 4 O -0.978 6.978 5 O -0.964 6.964 6 C -0.739 4.739 7 C -0.078 4.078 8 C -0.118 4.118 9 C -0.112 4.112 10 C 0.349 3.651 11 O -0.458 6.458 12 N -0.341 5.341 13 C 0.143 3.857 14 C -0.587 4.587 15 H 0.074 0.926 16 C -0.188 4.188 17 N -0.564 5.564 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.194 1.194 21 H -0.206 1.206 22 C 0.019 3.981 23 C -0.258 4.258 24 C -0.233 4.233 25 C -0.123 4.123 26 C -0.060 4.060 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.266 0.734 31 H 0.197 0.803 32 H 0.216 0.784 33 H 0.044 0.956 34 H 0.017 0.983 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.099 0.901 41 H 0.134 0.866 42 H 0.067 0.933 43 H 0.141 0.859 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -7.894 -13.999 -20.161 25.783 hybrid contribution 1.144 0.490 1.776 2.169 sum -6.750 -13.509 -18.384 23.792 Atomic orbital electron populations 1.21827 0.76886 1.06241 1.02764 1.55013 1.17140 1.23495 1.91534 1.00998 0.72060 0.72891 0.72993 1.93561 1.32988 1.83878 1.87362 1.93560 1.78947 1.69556 1.54297 1.31169 1.06491 1.15041 1.21198 1.21161 0.95039 0.93128 0.98447 1.23302 1.01543 0.95719 0.91255 1.20426 0.98391 0.98215 0.94167 1.18714 0.75545 0.82200 0.88682 1.90682 1.53231 1.65670 1.36211 1.48048 1.55406 1.08132 1.22517 1.18845 0.94778 0.88259 0.83857 1.21767 1.04377 1.28052 1.04475 0.92603 1.25835 1.01717 0.96771 0.94471 1.70056 1.40194 1.36963 1.09187 0.85386 0.78810 0.78476 0.78275 1.19203 1.19386 1.20628 1.21461 0.91360 0.99680 0.85595 1.23785 1.01971 1.03111 0.96927 1.22697 0.95726 1.00646 1.04189 1.21324 0.96693 0.95301 0.98972 1.20882 0.97695 0.97132 0.90315 0.91317 0.90829 0.87422 0.73380 0.80298 0.78374 0.95640 0.98275 0.92257 0.88884 0.90925 0.86467 0.92082 0.90088 0.86564 0.93301 0.85949 0.82390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.44 11.14 127.77 1.42 1.86 16 2 N -1.11 -11.38 6.19 -206.54 -1.28 -12.66 16 3 S 2.72 49.50 5.74 -56.49 -0.32 49.18 16 4 O -0.99 -24.17 17.27 -128.00 -2.21 -26.38 16 5 O -0.97 -21.60 16.99 -128.00 -2.17 -23.77 16 6 C -0.65 -13.64 5.95 22.33 0.13 -13.50 16 7 C -0.06 -1.12 9.24 22.23 0.21 -0.92 16 8 C -0.10 -2.40 4.88 22.53 0.11 -2.29 16 9 C -0.11 -3.62 4.26 -20.09 -0.09 -3.71 16 10 C 0.56 24.27 5.87 86.79 0.51 24.78 16 11 O -0.58 -30.11 16.79 -3.88 -0.07 -30.18 16 12 N -0.61 -26.04 2.38 -805.51 -1.92 -27.96 16 13 C 0.26 14.14 5.32 85.64 0.46 14.60 16 14 C -0.55 -31.06 9.39 25.60 0.24 -30.82 16 15 H 0.06 3.14 7.81 -2.91 -0.02 3.11 16 16 C 0.01 0.67 5.46 84.66 0.46 1.13 16 17 N -0.92 -55.20 13.29 21.45 0.28 -54.92 16 18 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 C 0.12 3.71 3.27 44.99 0.15 3.86 16 23 C -0.20 -5.17 7.72 71.98 0.56 -4.62 16 24 C -0.18 -3.80 8.36 71.98 0.60 -3.19 16 25 C -0.10 -3.26 9.67 22.53 0.22 -3.05 16 26 C -0.04 -1.02 9.50 22.23 0.21 -0.80 16 27 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 28 H 0.07 0.45 8.10 -2.39 -0.02 0.43 16 29 H 0.11 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.43 2.76 8.96 -96.75 -0.87 1.90 16 31 H 0.18 2.11 7.60 -2.91 -0.02 2.09 16 32 H 0.20 3.88 1.07 -4.02 0.00 3.88 16 33 H 0.03 1.39 7.93 -2.39 -0.02 1.37 16 34 H 0.00 -0.06 7.36 -2.39 -0.02 -0.07 16 35 H 0.27 14.98 8.31 -92.71 -0.77 14.20 16 36 H 0.09 2.93 7.81 -2.39 -0.02 2.91 16 37 H 0.07 2.23 3.99 -11.41 -0.05 2.19 16 38 H 0.12 1.90 5.23 -2.39 -0.01 1.89 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.12 1.44 6.18 -2.39 -0.01 1.43 16 42 H 0.05 1.25 6.82 -2.38 -0.02 1.24 16 43 H 0.12 4.13 8.06 -2.91 -0.02 4.11 16 44 H 0.16 3.26 7.60 -2.91 -0.02 3.24 16 Total: -1.00 -83.37 364.91 -0.32 -83.69 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 0.15 Total: 13.24 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 5.19 Total: -16.67 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -2.91 Total: -95.53 kcal Atomic # 8 Polarization: -75.89 SS G_CDS: -4.45 Total: -80.34 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 49.50 SS G_CDS: -0.32 Total: 49.18 kcal Total: -83.37 -0.32 -83.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069599952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.715 kcal (2) G-P(sol) polarization free energy of solvation -83.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds