Wall clock time and date at job start Tue Mar 31 2020 04:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38281 * 119.92750 * 2 1 4 4 C 1.38118 * 120.06718 * 180.02562 * 3 2 1 5 5 C 1.38875 * 119.92684 * 359.97438 * 4 3 2 6 6 N 1.39926 * 120.06450 * 180.02562 * 5 4 3 7 7 C 1.46490 * 120.00382 * 303.09759 * 6 5 4 8 8 C 1.50698 * 109.47566 * 270.00474 * 7 6 5 9 9 H 1.07998 * 119.99447 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00231 * 180.02562 * 8 7 6 11 11 N 1.31513 * 120.00186 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99674 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47598 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47273 * 119.99724 * 12 10 8 15 15 H 1.48507 * 109.47108 * 239.99887 * 12 10 8 16 16 C 1.34784 * 119.99719 * 123.10011 * 6 5 4 17 17 O 1.21286 * 119.99940 * 354.33602 * 16 6 5 18 18 C 1.50695 * 119.99975 * 174.33225 * 16 6 5 19 19 H 1.09000 * 115.56024 * 34.31344 * 18 16 6 20 20 C 1.52999 * 117.50236 * 248.62356 * 18 16 6 21 21 C 1.52994 * 59.99986 * 252.51100 * 20 18 16 22 22 H 1.09004 * 117.52220 * 107.48134 * 21 20 18 23 23 C 1.50706 * 117.49614 * 252.50678 * 21 20 18 24 24 C 1.39863 * 126.03995 * 8.65169 * 23 21 20 25 25 N 1.30834 * 108.20513 * 179.97438 * 24 23 21 26 26 N 1.40086 * 108.20288 * 359.97438 * 25 24 23 27 27 C 1.46501 * 126.03584 * 179.74107 * 26 25 24 28 28 C 1.34943 * 107.92847 * 359.97438 * 26 25 24 29 29 C 1.38868 * 119.85857 * 0.27463 * 5 4 3 30 30 C 1.38109 * 119.93224 * 359.43000 * 29 5 4 31 31 H 1.09002 * 109.47306 * 89.99926 * 1 2 3 32 32 H 1.08995 * 109.47302 * 210.00249 * 1 2 3 33 33 H 1.09004 * 109.47262 * 330.00107 * 1 2 3 34 34 H 1.07990 * 119.96870 * 359.97336 * 3 2 1 35 35 H 1.07993 * 120.03352 * 180.02562 * 4 3 2 36 36 H 1.09007 * 109.46979 * 30.00514 * 7 6 5 37 37 H 1.08999 * 109.47556 * 150.00058 * 7 6 5 38 38 H 0.96993 * 120.00068 * 180.02562 * 11 10 8 39 39 H 1.09000 * 117.50050 * 145.01486 * 20 18 16 40 40 H 1.09003 * 117.49847 * 359.97438 * 20 18 16 41 41 H 1.07999 * 125.90159 * 359.95124 * 24 23 21 42 42 H 1.08998 * 109.47502 * 90.02387 * 27 26 25 43 43 H 1.09001 * 109.47074 * 210.02527 * 27 26 25 44 44 H 1.09001 * 109.47552 * 330.02031 * 27 26 25 45 45 H 1.07997 * 126.13050 * 179.97438 * 28 26 25 46 46 H 1.08009 * 120.03237 * 179.72407 * 29 5 4 47 47 H 1.08000 * 119.96755 * 180.29428 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5781 1.2018 -0.0005 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 0.0000 -0.0005 7 6 6.4056 0.6927 -1.0633 8 6 6.6568 -0.2599 -2.2037 9 1 6.3062 -1.2795 -2.1426 10 6 7.3351 0.1700 -3.3245 11 7 7.7625 1.4116 -3.3986 12 14 7.6458 -1.0107 -4.7382 13 1 7.0678 -2.3387 -4.4103 14 1 7.0088 -0.4841 -5.9720 15 1 9.1083 -1.1481 -4.9562 16 6 6.3470 -0.6375 0.9773 17 8 5.7450 -1.1229 1.9117 18 6 7.8484 -0.7472 0.9097 19 1 8.3627 0.1050 0.4654 20 6 8.4454 -2.1355 0.6707 21 6 8.5552 -1.4827 2.0500 22 1 7.9341 -1.8869 2.8494 23 6 9.9090 -0.9735 2.4730 24 6 11.0452 -0.8852 1.6622 25 7 12.0233 -0.3967 2.3808 26 7 11.5395 -0.1578 3.6735 27 6 12.3101 0.3835 4.7958 28 6 10.2397 -0.5190 3.7040 29 6 3.5780 -1.2018 -0.0058 30 6 2.1969 -1.1984 0.0010 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8899 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.6553 2.1327 -0.0004 35 1 4.1163 2.1380 -0.0001 36 1 5.8166 1.5381 -1.4191 37 1 7.3580 1.0520 -0.6735 38 1 8.2393 1.7141 -4.1872 39 1 9.3523 -2.1967 0.0691 40 1 7.7521 -2.9697 0.5628 41 1 11.1050 -1.1713 0.6225 42 1 12.2337 1.4708 4.7983 43 1 11.9145 -0.0107 5.7319 44 1 13.3556 0.0930 4.6924 45 1 9.5816 -0.4580 4.5582 46 1 4.1163 -2.1382 -0.0103 47 1 1.6551 -2.1327 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069624006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:01 Heat of formation + Delta-G solvation = 97.499854 kcal Electronic energy + Delta-G solvation = -28719.909305 eV Core-core repulsion = 24870.369445 eV Total energy + Delta-G solvation = -3849.539860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.16576 -39.96519 -38.39793 -36.21214 -35.10078 -33.00575 -32.76476 -31.37633 -30.51756 -30.01698 -27.50916 -26.92702 -26.13023 -23.74844 -23.11550 -22.67623 -22.00015 -20.95821 -20.77148 -19.60159 -18.44749 -17.17129 -16.63529 -16.47665 -16.14813 -15.40601 -15.09749 -14.96127 -14.56473 -14.35243 -14.22649 -13.99653 -13.60901 -13.45603 -13.23687 -13.02542 -12.95260 -12.84268 -12.48995 -12.37509 -12.09853 -11.98003 -11.66762 -11.55011 -11.42554 -11.22891 -10.99255 -10.83895 -10.66805 -10.55675 -10.29398 -10.16243 -9.97308 -9.82437 -9.34776 -9.18561 -8.62458 -8.55096 -8.46877 -8.06810 -7.41345 -6.17374 -4.23714 1.75033 1.87326 1.92916 2.55266 2.78955 3.20200 3.23039 3.31941 3.36354 3.77321 4.20803 4.34329 4.40442 4.58452 4.90237 4.99227 5.05089 5.15886 5.19129 5.19595 5.22958 5.25984 5.34695 5.42447 5.43081 5.57551 5.61412 5.70697 5.74674 5.80744 5.85206 5.92892 6.10135 6.14439 6.17754 6.24200 6.45774 6.48288 6.58350 6.67799 6.73845 6.87410 6.96329 6.97732 7.03718 7.18066 7.28552 7.67502 7.76603 7.78122 8.03691 8.19547 8.78279 8.94840 9.43107 10.89741 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008665 B = 0.003699 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.514130 B = 7567.304518 C = 9875.108217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.112 4.112 3 C -0.109 4.109 4 C -0.127 4.127 5 C 0.176 3.824 6 N -0.554 5.554 7 C 0.238 3.762 8 C -0.529 4.529 9 H 0.062 0.938 10 C 0.066 3.934 11 N -0.892 5.892 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.282 1.282 16 C 0.550 3.450 17 O -0.559 6.559 18 C -0.158 4.158 19 H 0.130 0.870 20 C -0.131 4.131 21 C -0.056 4.056 22 H 0.118 0.882 23 C -0.195 4.195 24 C 0.059 3.941 25 N -0.301 5.301 26 N -0.383 5.383 27 C 0.105 3.895 28 C 0.057 3.943 29 C -0.108 4.108 30 C -0.110 4.110 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.264 0.736 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.184 0.816 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.173 0.827 46 H 0.118 0.882 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.738 -2.186 12.262 12.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.112 4.112 3 C -0.128 4.128 4 C -0.146 4.146 5 C 0.084 3.916 6 N -0.279 5.279 7 C 0.120 3.880 8 C -0.568 4.568 9 H 0.080 0.920 10 C -0.136 4.136 11 N -0.531 5.531 12 Si 0.723 3.277 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.208 1.208 16 C 0.341 3.659 17 O -0.439 6.439 18 C -0.179 4.179 19 H 0.147 0.853 20 C -0.168 4.168 21 C -0.076 4.076 22 H 0.136 0.864 23 C -0.206 4.206 24 C -0.127 4.127 25 N -0.122 5.122 26 N -0.165 5.165 27 C -0.037 4.037 28 C -0.088 4.088 29 C -0.128 4.128 30 C -0.129 4.129 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.115 0.885 41 H 0.201 0.799 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.190 0.810 46 H 0.136 0.864 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.431 -1.861 12.767 12.909 hybrid contribution -0.519 -0.572 -1.149 1.384 sum -0.088 -2.433 11.618 11.870 Atomic orbital electron populations 1.20698 0.91703 1.02112 1.01802 1.19763 0.95622 0.93244 1.02566 1.20748 0.93439 0.97243 1.01380 1.21105 0.94161 0.97397 1.01977 1.17618 0.83505 0.93045 0.97451 1.45915 1.03241 1.52341 1.26374 1.19611 0.91850 0.92652 0.83883 1.21421 1.36598 0.97729 1.01023 0.91974 1.24892 0.95253 0.95224 0.98266 1.69922 1.38077 1.15562 1.29496 0.86478 0.78023 0.81205 0.82039 1.19600 1.20927 1.20773 1.19664 0.88535 0.76772 0.80969 1.90614 1.70429 1.48869 1.33985 1.22231 0.91994 0.99250 1.04415 0.85258 1.22866 1.02354 0.94134 0.97474 1.20263 0.92516 1.02328 0.92480 0.86427 1.19341 0.95733 1.12046 0.93525 1.23841 0.90409 0.98240 1.00243 1.77347 1.23280 1.22338 0.89205 1.48400 1.08237 1.50450 1.09432 1.21789 0.97078 0.99312 0.85516 1.22215 0.86341 1.00375 0.99879 1.21085 0.93985 0.97454 1.00258 1.20772 0.93526 0.97237 1.01322 0.91664 0.92039 0.92025 0.86331 0.85962 0.94366 0.93860 0.92579 0.87907 0.88465 0.79878 0.90932 0.89687 0.89528 0.80975 0.86387 0.86446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.11 -1.69 5.88 -104.59 -0.62 -2.30 16 3 C -0.11 -1.74 9.69 -39.61 -0.38 -2.12 16 4 C -0.13 -2.35 9.32 -39.39 -0.37 -2.72 16 5 C 0.18 3.64 5.15 -83.69 -0.43 3.21 16 6 N -0.55 -12.05 2.56 -114.74 -0.29 -12.34 16 7 C 0.24 5.69 4.84 -5.20 -0.03 5.66 16 8 C -0.53 -13.65 9.38 -34.44 -0.32 -13.98 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 12 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 13 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 C 0.55 11.54 7.24 -10.98 -0.08 11.46 16 17 O -0.56 -12.47 15.65 5.55 0.09 -12.38 16 18 C -0.16 -2.90 5.05 -91.78 -0.46 -3.36 16 19 H 0.13 2.52 6.41 -51.93 -0.33 2.19 16 20 C -0.13 -2.09 9.73 -26.73 -0.26 -2.35 16 21 C -0.06 -0.87 5.76 -91.77 -0.53 -1.40 16 22 H 0.12 1.84 7.67 -51.93 -0.40 1.44 16 23 C -0.20 -2.84 5.76 -105.05 -0.61 -3.44 16 24 C 0.06 0.88 11.35 -17.37 -0.20 0.68 16 25 N -0.30 -4.58 12.58 30.62 0.39 -4.20 16 26 N -0.38 -4.81 4.01 -68.16 -0.27 -5.08 16 27 C 0.10 0.80 11.47 59.85 0.69 1.48 16 28 C 0.06 0.72 11.40 -17.22 -0.20 0.53 16 29 C -0.11 -2.09 8.98 -39.40 -0.35 -2.44 16 30 C -0.11 -1.79 9.69 -39.61 -0.38 -2.18 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.12 2.19 7.83 -52.49 -0.41 1.78 16 36 H 0.04 0.97 7.36 -51.92 -0.38 0.58 16 37 H 0.04 1.06 6.11 -51.93 -0.32 0.74 16 38 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.10 1.51 6.98 -51.93 -0.36 1.14 16 40 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 41 H 0.18 2.47 7.19 -52.49 -0.38 2.09 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.12 2.32 8.06 -52.48 -0.42 1.89 16 47 H 0.12 1.60 8.06 -52.49 -0.42 1.17 16 LS Contribution 399.88 15.07 6.03 6.03 Total: -1.00 -31.95 399.88 -9.39 -41.34 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -6.77 Total: 7.28 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -4.26 Total: -12.45 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: 0.55 Total: -45.33 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.95 -9.39 -41.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069624006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.837 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds