Wall clock time and date at job start Tue Mar 31 2020 04:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38284 * 119.92926 * 2 1 4 4 C 1.38110 * 120.07312 * 180.02562 * 3 2 1 5 5 C 1.38874 * 119.92704 * 0.02562 * 4 3 2 6 6 N 1.39929 * 120.06990 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99599 * 302.84965 * 6 5 4 8 8 C 1.50700 * 109.47401 * 270.00200 * 7 6 5 9 9 H 1.07998 * 119.99264 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00421 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99565 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00072 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47274 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47354 * 119.99628 * 12 10 8 15 15 H 1.48499 * 109.46978 * 239.99480 * 12 10 8 16 16 C 1.34770 * 120.00402 * 122.84949 * 6 5 4 17 17 O 1.21292 * 119.99577 * 354.32020 * 16 6 5 18 18 C 1.50700 * 120.00188 * 174.31637 * 16 6 5 19 19 H 1.08998 * 115.56188 * 325.68977 * 18 16 6 20 20 C 1.52996 * 117.49713 * 111.38129 * 18 16 6 21 21 C 1.53000 * 60.00209 * 107.48862 * 20 18 16 22 22 H 1.09000 * 117.49721 * 107.50884 * 21 20 18 23 23 C 1.50696 * 117.49754 * 252.50940 * 21 20 18 24 24 C 1.39869 * 126.04169 * 8.63363 * 23 21 20 25 25 N 1.30840 * 108.20117 * 180.02562 * 24 23 21 26 26 N 1.40079 * 108.20970 * 359.97438 * 25 24 23 27 27 C 1.46498 * 126.04037 * 180.02562 * 26 25 24 28 28 C 1.34951 * 107.92271 * 0.26342 * 26 25 24 29 29 C 1.38869 * 119.85826 * 0.26903 * 5 4 3 30 30 C 1.38108 * 119.92978 * 359.43100 * 29 5 4 31 31 H 1.08998 * 109.47004 * 90.00304 * 1 2 3 32 32 H 1.09006 * 109.46605 * 210.00193 * 1 2 3 33 33 H 1.08999 * 109.47285 * 329.99533 * 1 2 3 34 34 H 1.07999 * 119.96106 * 0.02562 * 3 2 1 35 35 H 1.07993 * 120.03521 * 179.97438 * 4 3 2 36 36 H 1.08998 * 109.47107 * 30.00107 * 7 6 5 37 37 H 1.09007 * 109.47232 * 150.00043 * 7 6 5 38 38 H 0.97002 * 119.99543 * 180.02562 * 11 10 8 39 39 H 1.09004 * 117.50175 * 0.02562 * 20 18 16 40 40 H 1.09005 * 117.49982 * 214.97768 * 20 18 16 41 41 H 1.08002 * 125.89965 * 359.97438 * 24 23 21 42 42 H 1.08999 * 109.47469 * 90.02282 * 27 26 25 43 43 H 1.09000 * 109.46880 * 330.02186 * 27 26 25 44 44 H 1.09001 * 109.46890 * 210.02442 * 27 26 25 45 45 H 1.07997 * 126.12884 * 179.73254 * 28 26 25 46 46 H 1.08002 * 120.03255 * 179.73076 * 29 5 4 47 47 H 1.08009 * 119.96585 * 180.29519 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0016 6 7 5.6732 0.0001 -0.0016 7 6 6.4056 0.6893 -1.0669 8 6 6.6567 -0.2673 -2.2040 9 1 6.3062 -1.2867 -2.1393 10 6 7.3348 0.1587 -3.3263 11 7 7.7621 1.4001 -3.4047 12 14 7.6455 -1.0268 -4.7360 13 1 7.0676 -2.3537 -4.4034 14 1 7.0083 -0.5046 -5.9716 15 1 9.1079 -1.1648 -4.9536 16 6 6.3471 -0.6338 0.9783 17 8 5.7451 -1.1157 1.9145 18 6 7.8486 -0.7441 0.9107 19 1 8.2679 -0.8496 -0.0898 20 6 8.6618 0.0463 1.9378 21 6 8.5553 -1.4756 2.0536 22 1 9.4397 -2.0623 1.8053 23 6 7.6968 -2.0308 3.1607 24 6 6.8495 -1.2930 3.9939 25 7 6.2745 -2.1207 4.8282 26 7 6.7378 -3.4134 4.5516 27 6 6.3456 -4.6381 5.2532 28 6 7.6134 -3.3305 3.5281 29 6 3.5781 -1.2017 -0.0078 30 6 2.1970 -1.1984 -0.0010 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5139 34 1 1.6551 2.1327 0.0004 35 1 4.1162 2.1382 -0.0010 36 1 5.8164 1.5333 -1.4255 37 1 7.3581 1.0500 -0.6784 38 1 8.2388 1.6999 -4.1945 39 1 8.1108 0.6456 2.6627 40 1 9.6162 0.4607 1.6129 41 1 6.6970 -0.2244 3.9557 42 1 5.4770 -5.0763 4.7615 43 1 6.0962 -4.4004 6.2873 44 1 7.1717 -5.3489 5.2329 45 1 8.1498 -4.1542 3.0807 46 1 4.1164 -2.1380 -0.0130 47 1 1.6552 -2.1328 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069624010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:05 Heat of formation + Delta-G solvation = 106.197473 kcal Electronic energy + Delta-G solvation = -29571.037109 eV Core-core repulsion = 25721.874406 eV Total energy + Delta-G solvation = -3849.162703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.93007 -39.83443 -38.36381 -36.13639 -34.98366 -32.80612 -32.71731 -31.33592 -30.48718 -29.71696 -27.49257 -26.70656 -26.03232 -23.77038 -23.02303 -22.58628 -21.97566 -20.82539 -20.67050 -19.55554 -18.33656 -16.95879 -16.72192 -16.40805 -15.75488 -15.11674 -14.98454 -14.92198 -14.63718 -14.36669 -14.03115 -14.00850 -13.44785 -13.37025 -13.20581 -12.98085 -12.79115 -12.64520 -12.41203 -12.28667 -12.04289 -11.85336 -11.62222 -11.54371 -11.43223 -11.22902 -10.98581 -10.81603 -10.64274 -10.47715 -10.23794 -10.13643 -9.93124 -9.81814 -9.21839 -8.81472 -8.58313 -8.54905 -8.44108 -7.58830 -7.36159 -6.19932 -4.27223 1.78423 1.90349 2.27983 2.88010 2.99686 3.20217 3.29169 3.33439 3.50571 3.81784 4.23307 4.32619 4.45561 4.72777 5.05541 5.12879 5.18384 5.19807 5.21257 5.22083 5.26390 5.38207 5.39910 5.45375 5.54081 5.61227 5.65970 5.76054 5.84226 5.87951 5.95156 6.03428 6.11130 6.13274 6.21280 6.40607 6.48976 6.55883 6.58201 6.69786 6.89371 6.99822 7.00919 7.09194 7.18661 7.31595 7.38468 7.70391 7.79255 8.02616 8.14750 8.25876 8.77862 9.03943 9.40309 10.86500 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007480 B = 0.004871 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.503094 B = 5747.167670 C = 8279.824557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.112 4.112 3 C -0.110 4.110 4 C -0.127 4.127 5 C 0.179 3.821 6 N -0.556 5.556 7 C 0.239 3.761 8 C -0.535 4.535 9 H 0.061 0.939 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.895 3.105 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.547 3.453 17 O -0.537 6.537 18 C -0.167 4.167 19 H 0.141 0.859 20 C -0.148 4.148 21 C -0.052 4.052 22 H 0.113 0.887 23 C -0.178 4.178 24 C 0.114 3.886 25 N -0.312 5.312 26 N -0.389 5.389 27 C 0.110 3.890 28 C 0.046 3.954 29 C -0.107 4.107 30 C -0.110 4.110 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.265 0.735 39 H 0.094 0.906 40 H 0.104 0.896 41 H 0.167 0.833 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.164 0.836 46 H 0.116 0.884 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 -5.832 10.985 12.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.112 4.112 3 C -0.128 4.128 4 C -0.147 4.147 5 C 0.087 3.913 6 N -0.283 5.283 7 C 0.120 3.880 8 C -0.574 4.574 9 H 0.079 0.921 10 C -0.136 4.136 11 N -0.528 5.528 12 Si 0.722 3.278 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.336 3.664 17 O -0.414 6.414 18 C -0.188 4.188 19 H 0.159 0.841 20 C -0.186 4.186 21 C -0.072 4.072 22 H 0.131 0.869 23 C -0.189 4.189 24 C -0.073 4.073 25 N -0.133 5.133 26 N -0.172 5.172 27 C -0.032 4.032 28 C -0.098 4.098 29 C -0.127 4.127 30 C -0.129 4.129 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.112 0.888 40 H 0.123 0.877 41 H 0.184 0.816 42 H 0.085 0.915 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.181 0.819 46 H 0.134 0.866 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.861 -6.219 12.397 14.396 hybrid contribution 0.796 -0.507 -2.071 2.276 sum -3.064 -6.726 10.325 12.698 Atomic orbital electron populations 1.20693 0.91772 1.02081 1.01747 1.19742 0.95569 0.93237 1.02679 1.20739 0.93487 0.97180 1.01419 1.21094 0.94117 0.97396 1.02090 1.17586 0.83617 0.92888 0.97197 1.45967 1.03103 1.52756 1.26426 1.19553 0.92004 0.92598 0.83795 1.21480 1.36741 0.97778 1.01360 0.92082 1.24907 0.95255 0.95253 0.98224 1.69930 1.37934 1.15585 1.29376 0.86481 0.77990 0.81212 0.82073 1.19682 1.20837 1.20771 1.19677 0.88540 0.76984 0.81153 1.90687 1.70109 1.47721 1.32896 1.22411 0.91887 1.06711 0.97832 0.84081 1.22955 1.01335 0.93676 1.00610 1.20255 0.98465 0.94010 0.94429 0.86901 1.19012 1.05604 0.92356 1.01945 1.23254 0.93174 0.99108 0.91738 1.77251 1.23136 0.87400 1.25533 1.48131 1.34842 1.06495 1.27775 1.21653 1.01000 0.82832 0.97713 1.21947 0.96687 0.98279 0.92902 1.21066 0.93920 0.97465 1.00233 1.20757 0.93582 0.97166 1.01388 0.91700 0.92110 0.92029 0.86399 0.86013 0.94451 0.93693 0.92555 0.88780 0.87743 0.81585 0.91511 0.89952 0.90183 0.81881 0.86602 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.25 10.01 36.01 0.36 -0.89 16 2 C -0.11 -1.75 5.88 -104.59 -0.62 -2.37 16 3 C -0.11 -1.78 9.69 -39.61 -0.38 -2.17 16 4 C -0.13 -2.39 9.32 -39.39 -0.37 -2.76 16 5 C 0.18 3.74 5.14 -83.69 -0.43 3.31 16 6 N -0.56 -11.99 2.56 -114.74 -0.29 -12.28 16 7 C 0.24 5.65 4.71 -5.19 -0.02 5.63 16 8 C -0.53 -13.79 8.82 -34.44 -0.30 -14.10 16 9 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -24.12 13.29 55.43 0.74 -23.38 16 12 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 C 0.55 11.20 7.20 -10.99 -0.08 11.13 16 17 O -0.54 -11.58 11.26 5.55 0.06 -11.52 16 18 C -0.17 -2.98 4.72 -91.77 -0.43 -3.41 16 19 H 0.14 2.72 7.02 -51.93 -0.36 2.36 16 20 C -0.15 -2.16 9.73 -26.73 -0.26 -2.42 16 21 C -0.05 -0.77 6.25 -91.77 -0.57 -1.35 16 22 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 23 C -0.18 -2.87 4.41 -105.05 -0.46 -3.33 16 24 C 0.11 2.00 8.37 -17.36 -0.15 1.85 16 25 N -0.31 -5.57 12.58 30.63 0.39 -5.18 16 26 N -0.39 -5.79 4.01 -68.16 -0.27 -6.06 16 27 C 0.11 1.07 11.47 59.85 0.69 1.76 16 28 C 0.05 0.67 11.40 -17.22 -0.20 0.47 16 29 C -0.11 -2.13 8.99 -39.40 -0.35 -2.48 16 30 C -0.11 -1.87 9.69 -39.61 -0.38 -2.26 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 33 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 34 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.12 2.19 7.84 -52.49 -0.41 1.78 16 36 H 0.04 0.94 7.37 -51.93 -0.38 0.56 16 37 H 0.05 1.07 6.90 -51.92 -0.36 0.72 16 38 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.09 1.36 6.97 -51.93 -0.36 1.00 16 40 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.17 2.83 7.09 -52.49 -0.37 2.46 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 46 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 47 H 0.12 1.67 8.06 -52.48 -0.42 1.25 16 LS Contribution 392.38 15.07 5.91 5.91 Total: -1.00 -31.66 392.38 -9.42 -41.08 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -6.86 Total: 7.78 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -4.06 Total: -11.73 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.55 Total: -46.91 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.06 Total: -11.52 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.66 -9.42 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069624010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.275 kcal (2) G-P(sol) polarization free energy of solvation -31.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds