Wall clock time and date at job start Tue Mar 31 2020 04:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38284 * 119.92926 * 2 1 4 4 C 1.38110 * 120.07312 * 180.02562 * 3 2 1 5 5 C 1.38874 * 119.92704 * 0.02562 * 4 3 2 6 6 N 1.39929 * 120.06990 * 180.02562 * 5 4 3 7 7 C 1.46498 * 119.99599 * 302.84965 * 6 5 4 8 8 C 1.50700 * 109.47401 * 270.00200 * 7 6 5 9 9 H 1.07998 * 119.99264 * 359.97438 * 8 7 6 10 10 C 1.37875 * 120.00421 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99565 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00072 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47274 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47354 * 119.99628 * 12 10 8 15 15 H 1.48499 * 109.46978 * 239.99480 * 12 10 8 16 16 C 1.34770 * 120.00402 * 122.84949 * 6 5 4 17 17 O 1.21292 * 119.99577 * 354.32020 * 16 6 5 18 18 C 1.50700 * 120.00188 * 174.31637 * 16 6 5 19 19 H 1.08998 * 115.56188 * 325.68977 * 18 16 6 20 20 C 1.52996 * 117.49713 * 111.38129 * 18 16 6 21 21 C 1.53000 * 60.00209 * 107.48862 * 20 18 16 22 22 H 1.09000 * 117.49721 * 107.50884 * 21 20 18 23 23 C 1.50696 * 117.49754 * 252.50940 * 21 20 18 24 24 C 1.39869 * 126.04169 * 8.63363 * 23 21 20 25 25 N 1.30840 * 108.20117 * 180.02562 * 24 23 21 26 26 N 1.40079 * 108.20970 * 359.97438 * 25 24 23 27 27 C 1.46498 * 126.04037 * 180.02562 * 26 25 24 28 28 C 1.34951 * 107.92271 * 0.26342 * 26 25 24 29 29 C 1.38869 * 119.85826 * 0.26903 * 5 4 3 30 30 C 1.38108 * 119.92978 * 359.43100 * 29 5 4 31 31 H 1.08998 * 109.47004 * 90.00304 * 1 2 3 32 32 H 1.09006 * 109.46605 * 210.00193 * 1 2 3 33 33 H 1.08999 * 109.47285 * 329.99533 * 1 2 3 34 34 H 1.07999 * 119.96106 * 0.02562 * 3 2 1 35 35 H 1.07993 * 120.03521 * 179.97438 * 4 3 2 36 36 H 1.08998 * 109.47107 * 30.00107 * 7 6 5 37 37 H 1.09007 * 109.47232 * 150.00043 * 7 6 5 38 38 H 0.97002 * 119.99543 * 180.02562 * 11 10 8 39 39 H 1.09004 * 117.50175 * 0.02562 * 20 18 16 40 40 H 1.09005 * 117.49982 * 214.97768 * 20 18 16 41 41 H 1.08002 * 125.89965 * 359.97438 * 24 23 21 42 42 H 1.08999 * 109.47469 * 90.02282 * 27 26 25 43 43 H 1.09000 * 109.46880 * 330.02186 * 27 26 25 44 44 H 1.09001 * 109.46890 * 210.02442 * 27 26 25 45 45 H 1.07997 * 126.12884 * 179.73254 * 28 26 25 46 46 H 1.08002 * 120.03255 * 179.73076 * 29 5 4 47 47 H 1.08009 * 119.96585 * 180.29519 * 30 29 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2019 -0.0005 5 6 4.2739 0.0001 -0.0016 6 7 5.6732 0.0001 -0.0016 7 6 6.4056 0.6893 -1.0669 8 6 6.6567 -0.2673 -2.2040 9 1 6.3062 -1.2867 -2.1393 10 6 7.3348 0.1587 -3.3263 11 7 7.7621 1.4001 -3.4047 12 14 7.6455 -1.0268 -4.7360 13 1 7.0676 -2.3537 -4.4034 14 1 7.0083 -0.5046 -5.9716 15 1 9.1079 -1.1648 -4.9536 16 6 6.3471 -0.6338 0.9783 17 8 5.7451 -1.1157 1.9145 18 6 7.8486 -0.7441 0.9107 19 1 8.2679 -0.8496 -0.0898 20 6 8.6618 0.0463 1.9378 21 6 8.5553 -1.4756 2.0536 22 1 9.4397 -2.0623 1.8053 23 6 7.6968 -2.0308 3.1607 24 6 6.8495 -1.2930 3.9939 25 7 6.2745 -2.1207 4.8282 26 7 6.7378 -3.4134 4.5516 27 6 6.3456 -4.6381 5.2532 28 6 7.6134 -3.3305 3.5281 29 6 3.5781 -1.2017 -0.0078 30 6 2.1970 -1.1984 -0.0010 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5139 34 1 1.6551 2.1327 0.0004 35 1 4.1162 2.1382 -0.0010 36 1 5.8164 1.5333 -1.4255 37 1 7.3581 1.0500 -0.6784 38 1 8.2388 1.6999 -4.1945 39 1 8.1108 0.6456 2.6627 40 1 9.6162 0.4607 1.6129 41 1 6.6970 -0.2244 3.9557 42 1 5.4770 -5.0763 4.7615 43 1 6.0962 -4.4004 6.2873 44 1 7.1717 -5.3489 5.2329 45 1 8.1498 -4.1542 3.0807 46 1 4.1164 -2.1380 -0.0130 47 1 1.6552 -2.1328 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069624010.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:04 Heat of formation + Delta-G solvation = 90.262487 kcal Electronic energy + Delta-G solvation = -29571.728102 eV Core-core repulsion = 25721.874406 eV Total energy + Delta-G solvation = -3849.853696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.16694 -41.29719 -39.73720 -37.48119 -36.62473 -34.68731 -33.78998 -32.72621 -31.88759 -30.91074 -29.29914 -27.85036 -27.23680 -25.36570 -24.60299 -23.79742 -23.47030 -22.16189 -21.82983 -20.80770 -19.76970 -18.66423 -18.39970 -17.88742 -17.16863 -16.48027 -16.43817 -16.22616 -16.07360 -15.84691 -15.37904 -15.16165 -14.87127 -14.56600 -14.49159 -14.35881 -14.25977 -13.83132 -13.72050 -13.50035 -13.41237 -13.10059 -13.03977 -12.89248 -12.81491 -12.68498 -12.62827 -12.47501 -12.11417 -11.97853 -11.72332 -11.68116 -11.44726 -11.16731 -10.73653 -10.55888 -10.17993 -10.00472 -9.85741 -8.92700 -8.80905 -8.19689 -6.35355 0.37590 0.48484 1.12141 1.38632 1.41606 1.51747 1.58610 1.87818 2.12201 2.25606 2.42634 2.84108 3.08954 3.18767 3.64174 3.87249 3.96195 4.04108 4.04925 4.08948 4.09865 4.17061 4.37188 4.45903 4.47773 4.49167 4.51229 4.55834 4.61123 4.69297 4.82781 4.87788 4.89932 4.95515 4.97805 5.10862 5.16846 5.17521 5.20592 5.22566 5.41166 5.42391 5.56021 5.67701 5.69471 5.84091 5.86878 6.04445 6.21802 6.35281 6.55267 6.79289 6.92748 7.32627 7.46520 8.84876 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007480 B = 0.004871 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3742.503094 B = 5747.167670 C = 8279.824557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.105 4.105 3 C -0.107 4.107 4 C -0.145 4.145 5 C 0.142 3.858 6 N -0.562 5.562 7 C 0.259 3.741 8 C -0.542 4.542 9 H 0.046 0.954 10 C 0.026 3.974 11 N -0.917 5.917 12 Si 0.955 3.045 13 H -0.275 1.275 14 H -0.280 1.280 15 H -0.271 1.271 16 C 0.541 3.459 17 O -0.551 6.551 18 C -0.195 4.195 19 H 0.123 0.877 20 C -0.133 4.133 21 C -0.031 4.031 22 H 0.143 0.857 23 C -0.203 4.203 24 C 0.099 3.901 25 N -0.348 5.348 26 N -0.388 5.388 27 C 0.099 3.901 28 C 0.055 3.945 29 C -0.129 4.129 30 C -0.113 4.113 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.118 0.882 36 H 0.015 0.985 37 H 0.038 0.962 38 H 0.269 0.731 39 H 0.090 0.910 40 H 0.127 0.873 41 H 0.156 0.844 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.117 0.883 45 H 0.202 0.798 46 H 0.096 0.904 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.416 -7.349 11.067 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C -0.125 4.125 4 C -0.164 4.164 5 C 0.050 3.950 6 N -0.288 5.288 7 C 0.139 3.861 8 C -0.580 4.580 9 H 0.064 0.936 10 C -0.175 4.175 11 N -0.556 5.556 12 Si 0.780 3.220 13 H -0.199 1.199 14 H -0.206 1.206 15 H -0.196 1.196 16 C 0.332 3.668 17 O -0.430 6.430 18 C -0.216 4.216 19 H 0.140 0.860 20 C -0.171 4.171 21 C -0.050 4.050 22 H 0.161 0.839 23 C -0.215 4.215 24 C -0.087 4.087 25 N -0.171 5.171 26 N -0.172 5.172 27 C -0.041 4.041 28 C -0.091 4.091 29 C -0.149 4.149 30 C -0.131 4.131 31 H 0.098 0.902 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.169 0.831 35 H 0.136 0.864 36 H 0.033 0.967 37 H 0.056 0.944 38 H 0.078 0.922 39 H 0.109 0.891 40 H 0.145 0.855 41 H 0.173 0.827 42 H 0.090 0.910 43 H 0.106 0.894 44 H 0.135 0.865 45 H 0.219 0.781 46 H 0.114 0.886 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.465 -7.741 12.503 15.368 hybrid contribution 0.855 -0.081 -2.018 2.193 sum -3.610 -7.822 10.485 13.571 Atomic orbital electron populations 1.20773 0.88275 1.03769 1.03158 1.20254 0.97994 0.92220 1.00100 1.21154 0.92462 0.99092 0.99841 1.21262 0.95585 0.96626 1.02971 1.17939 0.83477 0.94086 0.99488 1.45930 1.03691 1.53014 1.26180 1.19119 0.91364 0.91628 0.83940 1.21567 1.36771 0.97311 1.02362 0.93616 1.25583 0.94935 0.96658 1.00275 1.70012 1.38478 1.16915 1.30182 0.85553 0.78298 0.79021 0.79095 1.19932 1.20560 1.19583 1.20157 0.89678 0.76370 0.80560 1.90668 1.70787 1.48301 1.33206 1.22286 0.90329 1.10879 0.98127 0.85952 1.23066 1.01284 0.94079 0.98655 1.20412 0.98194 0.94349 0.92094 0.83942 1.19219 1.06477 0.93174 1.02604 1.23224 0.93925 0.98961 0.92557 1.77151 1.24318 0.89049 1.26570 1.48551 1.34119 1.06681 1.27819 1.22056 1.02791 0.81591 0.97625 1.22560 0.95796 0.98717 0.92024 1.21072 0.95387 0.96335 1.02111 1.21097 0.92456 0.99126 1.00462 0.90221 0.90693 0.90192 0.83126 0.86363 0.96703 0.94409 0.92223 0.89134 0.85482 0.82709 0.91035 0.89357 0.86458 0.78083 0.88603 0.84126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.01 71.24 0.71 -1.34 16 2 C -0.11 -3.10 5.88 -19.84 -0.12 -3.22 16 3 C -0.11 -3.38 9.69 22.25 0.22 -3.16 16 4 C -0.14 -5.63 9.32 22.39 0.21 -5.42 16 5 C 0.14 6.22 5.14 38.15 0.20 6.41 16 6 N -0.56 -25.75 2.56 -635.30 -1.63 -27.37 16 7 C 0.26 12.97 4.71 85.63 0.40 13.37 16 8 C -0.54 -29.00 8.82 25.60 0.23 -28.77 16 9 H 0.05 2.54 7.81 -2.91 -0.02 2.52 16 10 C 0.03 1.38 5.46 84.65 0.46 1.85 16 11 N -0.92 -50.52 13.29 21.45 0.28 -50.24 16 12 Si 0.95 42.18 29.54 68.60 2.03 44.20 16 13 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 14 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 15 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 16 C 0.54 23.41 7.20 87.66 0.63 24.04 16 17 O -0.55 -24.97 11.26 -3.07 -0.03 -25.00 16 18 C -0.20 -7.18 4.72 -11.54 -0.05 -7.23 16 19 H 0.12 4.94 7.02 -2.39 -0.02 4.92 16 20 C -0.13 -3.92 9.73 30.59 0.30 -3.62 16 21 C -0.03 -0.91 6.25 -11.54 -0.07 -0.98 16 22 H 0.14 3.27 8.14 -2.39 -0.02 3.25 16 23 C -0.20 -6.48 4.41 -20.14 -0.09 -6.57 16 24 C 0.10 3.57 8.37 85.24 0.71 4.28 16 25 N -0.35 -12.58 12.58 -57.02 -0.72 -13.30 16 26 N -0.39 -11.07 4.01 -369.56 -1.48 -12.55 16 27 C 0.10 1.72 11.47 127.77 1.47 3.19 16 28 C 0.05 1.48 11.40 83.54 0.95 2.44 16 29 C -0.13 -5.35 8.99 22.39 0.20 -5.15 16 30 C -0.11 -3.78 9.69 22.25 0.22 -3.56 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.07 1.31 8.08 -2.38 -0.02 1.29 16 33 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 34 H 0.15 3.67 8.06 -2.91 -0.02 3.64 16 35 H 0.12 4.52 7.84 -2.91 -0.02 4.50 16 36 H 0.01 0.80 7.37 -2.39 -0.02 0.78 16 37 H 0.04 1.92 6.90 -2.38 -0.02 1.90 16 38 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 39 H 0.09 2.71 6.97 -2.38 -0.02 2.70 16 40 H 0.13 3.12 8.14 -2.38 -0.02 3.10 16 41 H 0.16 5.66 7.09 -2.91 -0.02 5.64 16 42 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.20 3.72 8.06 -2.91 -0.02 3.70 16 46 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 47 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -71.75 392.38 5.99 -65.77 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.97 Total: 31.95 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: 6.57 Total: -13.45 kcal Atomic # 7 Polarization: -99.92 SS G_CDS: -3.54 Total: -103.46 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -0.03 Total: -25.00 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -71.75 5.99 -65.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069624010.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.029 kcal (2) G-P(sol) polarization free energy of solvation -71.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds