Wall clock time and date at job start Tue Mar 31 2020 05:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46709 * 2 1 4 4 C 1.35906 * 116.99969 * 179.97438 * 3 2 1 5 5 C 1.38852 * 119.98735 * 0.02830 * 4 3 2 6 6 C 1.38243 * 120.24306 * 179.97438 * 5 4 3 7 7 C 1.38003 * 120.20431 * 359.74185 * 6 5 4 8 8 C 1.39562 * 119.96763 * 0.50972 * 7 6 5 9 9 C 1.47855 * 120.12299 * 179.77068 * 8 7 6 10 10 O 1.21551 * 120.00204 * 50.09943 * 9 8 7 11 11 N 1.34782 * 119.99952 * 230.10369 * 9 8 7 12 12 C 1.46496 * 120.00313 * 355.00637 * 11 9 8 13 13 C 1.50699 * 109.47001 * 265.67368 * 12 11 9 14 14 H 1.07998 * 120.00086 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99817 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99965 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99935 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46915 * 89.99827 * 17 15 13 19 19 H 1.48501 * 109.46952 * 209.99915 * 17 15 13 20 20 H 1.48504 * 109.46957 * 330.00044 * 17 15 13 21 21 C 1.46505 * 119.99917 * 175.00148 * 11 9 8 22 22 C 1.50702 * 109.46509 * 90.00168 * 21 11 9 23 23 C 1.38223 * 119.61896 * 94.98360 * 22 21 11 24 24 C 1.38630 * 119.16301 * 180.02562 * 23 22 21 25 25 C 1.38667 * 118.41926 * 359.97438 * 24 23 22 26 26 C 1.38184 * 119.16637 * 0.02562 * 25 24 23 27 27 N 1.31854 * 119.61777 * 274.99621 * 22 21 11 28 28 C 1.38454 * 119.98696 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47286 * 60.00124 * 1 2 3 30 30 H 1.09007 * 109.46613 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47322 * 299.99592 * 1 2 3 32 32 H 1.09000 * 109.47322 * 240.00408 * 2 1 3 33 33 H 1.08992 * 109.47313 * 119.99745 * 2 1 3 34 34 H 1.08008 * 119.88095 * 359.95258 * 5 4 3 35 35 H 1.07999 * 119.89717 * 180.02562 * 6 5 4 36 36 H 1.08008 * 120.02114 * 180.26128 * 7 6 5 37 37 H 1.09007 * 109.46713 * 25.66663 * 12 11 9 38 38 H 1.08997 * 109.47400 * 145.66450 * 12 11 9 39 39 H 0.97006 * 119.99609 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.46747 * 330.00684 * 21 11 9 41 41 H 1.08992 * 109.47208 * 209.99733 * 21 11 9 42 42 H 1.08003 * 120.41476 * 359.97438 * 23 22 21 43 43 H 1.08002 * 120.78631 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.41753 * 180.02562 * 25 24 23 45 45 H 1.07993 * 119.62003 * 180.27551 * 26 25 24 46 46 H 1.07997 * 120.10113 * 0.05015 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3536 1.5255 0.0005 5 6 4.1992 0.4242 0.0005 6 6 5.5705 0.5994 0.0005 7 6 6.1082 1.8703 -0.0048 8 6 5.2662 2.9834 0.0006 9 6 5.8386 4.3467 0.0001 10 8 6.6928 4.6469 -0.8108 11 7 5.4131 5.2565 0.8988 12 6 4.3082 4.9309 1.8039 13 6 3.0121 5.4203 1.2108 14 1 3.0116 5.9239 0.2555 15 6 1.8270 5.2251 1.8879 16 7 1.8276 4.6114 3.0511 17 14 0.2205 5.8323 1.1531 18 1 -0.3731 4.7639 0.3098 19 1 -0.7225 6.1821 2.2456 20 1 0.4803 7.0337 0.3197 21 6 6.0557 6.5712 0.9707 22 6 5.3485 7.5271 0.0448 23 6 4.3544 8.3493 0.5410 24 6 3.7097 9.2246 -0.3192 25 6 4.0911 9.2407 -1.6522 26 6 5.0937 8.3894 -2.0762 27 7 5.6851 7.5693 -1.2294 28 6 3.8824 2.8051 0.0011 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8899 34 1 3.7842 -0.5729 0.0008 35 1 6.2231 -0.2612 0.0000 36 1 7.1800 2.0037 -0.0090 37 1 4.2590 3.8509 1.9434 38 1 4.4727 5.4144 2.7668 39 1 0.9937 4.4737 3.5273 40 1 7.1002 6.4818 0.6720 41 1 6.0006 6.9472 1.9922 42 1 4.0827 8.3096 1.5856 43 1 2.9295 9.8790 0.0406 44 1 3.6107 9.9102 -2.3504 45 1 5.3996 8.3991 -3.1118 46 1 3.2258 3.6625 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069700494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:46 Heat of formation + Delta-G solvation = -4.156675 kcal Electronic energy + Delta-G solvation = -30141.274889 eV Core-core repulsion = 26189.608209 eV Total energy + Delta-G solvation = -3951.666680 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.08332 -39.61116 -38.65263 -36.64534 -35.12060 -32.84109 -31.95231 -31.74708 -31.50311 -30.31167 -29.04102 -27.59233 -26.20595 -23.99761 -23.09920 -22.85833 -22.16231 -22.02615 -21.13856 -19.06732 -17.34823 -16.75262 -16.40684 -16.04738 -15.82296 -15.76394 -15.55308 -15.39899 -15.08347 -15.02283 -14.39731 -13.91293 -13.45888 -13.24815 -13.07396 -12.98366 -12.85766 -12.62921 -12.50248 -12.36568 -12.15478 -11.83511 -11.66727 -11.54416 -11.33270 -11.25475 -11.17095 -10.94665 -10.73812 -10.48829 -10.45064 -10.14268 -9.78350 -9.38418 -9.11632 -8.91189 -8.61661 -8.48641 -8.29253 -7.77467 -7.67981 -6.18493 -4.23788 1.48801 1.61018 1.80480 1.95221 3.22780 3.30132 3.31785 3.39578 3.64448 3.86443 4.28604 4.32732 4.50967 4.80513 5.05167 5.05917 5.12765 5.19526 5.23705 5.25766 5.29184 5.34532 5.47888 5.50691 5.59620 5.64575 5.73112 5.88263 5.91014 5.96719 5.99438 6.06471 6.16965 6.21113 6.25358 6.51856 6.59427 6.66119 6.72383 6.74243 6.83567 7.05896 7.17259 7.19963 7.22468 7.53760 7.75589 7.91569 8.05832 8.30328 8.56528 8.79665 9.01924 9.42212 10.87556 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.005087 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.315308 B = 5502.775708 C = 7213.099818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.306 6.306 4 C 0.120 3.880 5 C -0.200 4.200 6 C -0.101 4.101 7 C -0.117 4.117 8 C -0.081 4.081 9 C 0.559 3.441 10 O -0.542 6.542 11 N -0.587 5.587 12 C 0.230 3.770 13 C -0.534 4.534 14 H 0.061 0.939 15 C 0.076 3.924 16 N -0.881 5.881 17 Si 0.884 3.116 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.173 3.827 22 C 0.124 3.876 23 C -0.130 4.130 24 C -0.085 4.085 25 C -0.181 4.181 26 C 0.086 3.914 27 N -0.459 5.459 28 C -0.097 4.097 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.048 0.952 38 H 0.034 0.966 39 H 0.264 0.736 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.137 0.863 43 H 0.127 0.873 44 H 0.125 0.875 45 H 0.146 0.854 46 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.451 -2.621 -3.380 4.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.220 6.220 4 C 0.075 3.925 5 C -0.219 4.219 6 C -0.119 4.119 7 C -0.136 4.136 8 C -0.084 4.084 9 C 0.347 3.653 10 O -0.420 6.420 11 N -0.317 5.317 12 C 0.111 3.889 13 C -0.572 4.572 14 H 0.079 0.921 15 C -0.129 4.129 16 N -0.518 5.518 17 Si 0.711 3.289 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.049 3.951 22 C -0.016 4.016 23 C -0.150 4.150 24 C -0.111 4.111 25 C -0.202 4.202 26 C -0.071 4.071 27 N -0.168 5.168 28 C -0.116 4.116 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.074 0.926 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.155 0.845 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.164 0.836 46 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 2.280 -2.940 -3.907 5.395 hybrid contribution -2.000 0.563 0.015 2.077 sum 0.280 -2.378 -3.892 4.569 Atomic orbital electron populations 1.21758 0.93185 1.02206 1.03764 1.22682 0.95704 0.82826 1.00747 1.86189 1.19032 1.28064 1.88670 1.18868 0.82259 0.93884 0.97467 1.21267 0.94469 0.97667 1.08480 1.20660 0.94111 0.96691 1.00471 1.20939 0.99410 0.91367 1.01867 1.19675 0.93147 0.93577 1.02040 1.18257 0.81705 0.84522 0.80806 1.90743 1.33233 1.80213 1.37851 1.48117 1.35538 1.11544 1.36506 1.19678 0.82766 0.98107 0.88363 1.21358 0.91127 1.38726 1.05968 0.92094 1.24838 0.98780 0.94640 0.94598 1.69915 1.27484 1.40741 1.13639 0.86698 0.83652 0.79527 0.79012 1.20126 1.21150 1.19807 1.20104 0.96446 0.81746 0.96796 1.21618 0.94327 0.94264 0.91344 1.21997 0.95760 0.95507 1.01768 1.21488 0.98237 0.97872 0.93529 1.22026 0.99825 1.01636 0.96674 1.22634 0.93345 0.92002 0.99155 1.67576 1.27366 1.18740 1.03128 1.21601 0.94772 0.97201 0.97983 0.91692 0.90838 0.91307 0.92621 0.92345 0.86079 0.86027 0.85910 0.93382 0.94757 0.92579 0.89414 0.89279 0.84490 0.85532 0.85729 0.83646 0.80932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 10.28 37.16 0.38 -1.45 16 2 C 0.06 0.77 5.46 37.16 0.20 0.98 16 3 O -0.31 -5.86 10.13 -19.44 -0.20 -6.06 16 4 C 0.12 2.34 6.68 -39.27 -0.26 2.08 16 5 C -0.20 -3.23 9.03 -39.35 -0.36 -3.59 16 6 C -0.10 -1.57 10.03 -39.67 -0.40 -1.97 16 7 C -0.12 -2.09 9.73 -39.17 -0.38 -2.47 16 8 C -0.08 -1.70 4.87 -104.99 -0.51 -2.21 16 9 C 0.56 12.46 7.21 -12.32 -0.09 12.38 16 10 O -0.54 -13.01 16.67 5.32 0.09 -12.92 16 11 N -0.59 -12.54 2.44 -177.54 -0.43 -12.97 16 12 C 0.23 5.33 4.72 -5.20 -0.02 5.31 16 13 C -0.53 -13.18 6.03 -34.44 -0.21 -13.39 16 14 H 0.06 1.60 7.14 -52.49 -0.37 1.22 16 15 C 0.08 1.93 5.46 -17.82 -0.10 1.83 16 16 N -0.88 -23.40 13.29 55.43 0.74 -22.66 16 17 Si 0.88 20.38 29.54 -169.99 -5.02 15.36 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.54 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 21 C 0.17 3.28 5.72 -5.19 -0.03 3.25 16 22 C 0.12 2.39 5.90 -82.59 -0.49 1.90 16 23 C -0.13 -2.30 8.78 -39.44 -0.35 -2.65 16 24 C -0.09 -1.35 10.18 -39.28 -0.40 -1.75 16 25 C -0.18 -2.73 10.11 -39.44 -0.40 -3.13 16 26 C 0.09 1.45 11.18 -17.55 -0.20 1.25 16 27 N -0.46 -9.16 10.27 -9.47 -0.10 -9.25 16 28 C -0.10 -2.11 7.54 -39.02 -0.29 -2.41 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 33 H 0.06 0.74 7.66 -51.93 -0.40 0.34 16 34 H 0.12 1.58 6.28 -52.48 -0.33 1.26 16 35 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 36 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 37 H 0.05 1.19 5.59 -51.93 -0.29 0.90 16 38 H 0.03 0.82 7.95 -51.93 -0.41 0.40 16 39 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.09 1.65 7.50 -51.93 -0.39 1.26 16 41 H 0.09 1.46 7.83 -51.93 -0.41 1.05 16 42 H 0.14 2.34 8.06 -52.48 -0.42 1.92 16 43 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 44 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 45 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 46 H 0.17 4.23 4.85 -52.49 -0.25 3.98 16 LS Contribution 386.12 15.07 5.82 5.82 Total: -1.00 -30.90 386.12 -9.19 -40.10 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.19 Total: 8.62 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -3.89 Total: -6.03 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.21 Total: -44.89 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.11 Total: -18.97 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.90 -9.19 -40.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069700494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.939 kcal (2) G-P(sol) polarization free energy of solvation -30.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds