Wall clock time and date at job start Tue Mar 31 2020 05:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42908 * 109.46709 * 2 1 4 4 C 1.35906 * 116.99969 * 179.97438 * 3 2 1 5 5 C 1.38852 * 119.98735 * 0.02830 * 4 3 2 6 6 C 1.38243 * 120.24306 * 179.97438 * 5 4 3 7 7 C 1.38003 * 120.20431 * 359.74185 * 6 5 4 8 8 C 1.39562 * 119.96763 * 0.50972 * 7 6 5 9 9 C 1.47855 * 120.12299 * 179.77068 * 8 7 6 10 10 O 1.21551 * 120.00204 * 50.09943 * 9 8 7 11 11 N 1.34782 * 119.99952 * 230.10369 * 9 8 7 12 12 C 1.46496 * 120.00313 * 355.00637 * 11 9 8 13 13 C 1.50699 * 109.47001 * 265.67368 * 12 11 9 14 14 H 1.07998 * 120.00086 * 359.97438 * 13 12 11 15 15 C 1.37880 * 119.99817 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99965 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99935 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.46915 * 89.99827 * 17 15 13 19 19 H 1.48501 * 109.46952 * 209.99915 * 17 15 13 20 20 H 1.48504 * 109.46957 * 330.00044 * 17 15 13 21 21 C 1.46505 * 119.99917 * 175.00148 * 11 9 8 22 22 C 1.50702 * 109.46509 * 90.00168 * 21 11 9 23 23 C 1.38223 * 119.61896 * 94.98360 * 22 21 11 24 24 C 1.38630 * 119.16301 * 180.02562 * 23 22 21 25 25 C 1.38667 * 118.41926 * 359.97438 * 24 23 22 26 26 C 1.38184 * 119.16637 * 0.02562 * 25 24 23 27 27 N 1.31854 * 119.61777 * 274.99621 * 22 21 11 28 28 C 1.38454 * 119.98696 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.47286 * 60.00124 * 1 2 3 30 30 H 1.09007 * 109.46613 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47322 * 299.99592 * 1 2 3 32 32 H 1.09000 * 109.47322 * 240.00408 * 2 1 3 33 33 H 1.08992 * 109.47313 * 119.99745 * 2 1 3 34 34 H 1.08008 * 119.88095 * 359.95258 * 5 4 3 35 35 H 1.07999 * 119.89717 * 180.02562 * 6 5 4 36 36 H 1.08008 * 120.02114 * 180.26128 * 7 6 5 37 37 H 1.09007 * 109.46713 * 25.66663 * 12 11 9 38 38 H 1.08997 * 109.47400 * 145.66450 * 12 11 9 39 39 H 0.97006 * 119.99609 * 180.02562 * 16 15 13 40 40 H 1.09003 * 109.46747 * 330.00684 * 21 11 9 41 41 H 1.08992 * 109.47208 * 209.99733 * 21 11 9 42 42 H 1.08003 * 120.41476 * 359.97438 * 23 22 21 43 43 H 1.08002 * 120.78631 * 180.02562 * 24 23 22 44 44 H 1.08002 * 120.41753 * 180.02562 * 25 24 23 45 45 H 1.07993 * 119.62003 * 180.27551 * 26 25 24 46 46 H 1.07997 * 120.10113 * 0.05015 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3536 1.5255 0.0005 5 6 4.1992 0.4242 0.0005 6 6 5.5705 0.5994 0.0005 7 6 6.1082 1.8703 -0.0048 8 6 5.2662 2.9834 0.0006 9 6 5.8386 4.3467 0.0001 10 8 6.6928 4.6469 -0.8108 11 7 5.4131 5.2565 0.8988 12 6 4.3082 4.9309 1.8039 13 6 3.0121 5.4203 1.2108 14 1 3.0116 5.9239 0.2555 15 6 1.8270 5.2251 1.8879 16 7 1.8276 4.6114 3.0511 17 14 0.2205 5.8323 1.1531 18 1 -0.3731 4.7639 0.3098 19 1 -0.7225 6.1821 2.2456 20 1 0.4803 7.0337 0.3197 21 6 6.0557 6.5712 0.9707 22 6 5.3485 7.5271 0.0448 23 6 4.3544 8.3493 0.5410 24 6 3.7097 9.2246 -0.3192 25 6 4.0911 9.2407 -1.6522 26 6 5.0937 8.3894 -2.0762 27 7 5.6851 7.5693 -1.2294 28 6 3.8824 2.8051 0.0011 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8899 34 1 3.7842 -0.5729 0.0008 35 1 6.2231 -0.2612 0.0000 36 1 7.1800 2.0037 -0.0090 37 1 4.2590 3.8509 1.9434 38 1 4.4727 5.4144 2.7668 39 1 0.9937 4.4737 3.5273 40 1 7.1002 6.4818 0.6720 41 1 6.0006 6.9472 1.9922 42 1 4.0827 8.3096 1.5856 43 1 2.9295 9.8790 0.0406 44 1 3.6107 9.9102 -2.3504 45 1 5.3996 8.3991 -3.1118 46 1 3.2258 3.6625 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069700494.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:45 Heat of formation + Delta-G solvation = -21.371935 kcal Electronic energy + Delta-G solvation = -30142.021399 eV Core-core repulsion = 26189.608209 eV Total energy + Delta-G solvation = -3952.413190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.58758 -40.95980 -40.17173 -38.04718 -36.88871 -34.68068 -33.36835 -32.98574 -32.82823 -31.71325 -30.40691 -29.40856 -27.74952 -25.37869 -24.77635 -24.26442 -23.51045 -23.43058 -22.49888 -20.55523 -18.88711 -18.64937 -17.86941 -17.54283 -17.25639 -16.98150 -16.95595 -16.78407 -16.72587 -16.39805 -16.20272 -15.41342 -14.94270 -14.64603 -14.44981 -14.36464 -14.23811 -14.07827 -13.98586 -13.80814 -13.41610 -13.35764 -13.15301 -12.94713 -12.89516 -12.75557 -12.61325 -12.52074 -12.44701 -12.10449 -11.75201 -11.71257 -11.61860 -10.85745 -10.68309 -10.57528 -10.30824 -9.87291 -9.78809 -9.47783 -9.11668 -8.16818 -6.25031 0.05521 0.26035 0.48904 0.54420 1.35255 1.40464 1.45747 1.78325 2.23393 2.36849 2.45006 2.85934 3.07898 3.14751 3.46980 3.67591 3.91286 3.92971 4.05510 4.06577 4.12556 4.19531 4.26529 4.32043 4.34104 4.38579 4.49642 4.52259 4.60078 4.63655 4.81039 4.83395 4.90058 4.92132 4.94474 5.12155 5.17974 5.24802 5.29336 5.34519 5.35590 5.43533 5.57397 5.69051 5.80557 5.82404 5.89013 6.09966 6.51806 6.59017 6.82591 7.21260 7.26365 7.43533 8.88953 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.005087 C = 0.003881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.315308 B = 5502.775708 C = 7213.099818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.044 3.956 3 O -0.340 6.340 4 C 0.108 3.892 5 C -0.187 4.187 6 C -0.083 4.083 7 C -0.123 4.123 8 C -0.104 4.104 9 C 0.554 3.446 10 O -0.567 6.567 11 N -0.586 5.586 12 C 0.249 3.751 13 C -0.517 4.517 14 H 0.043 0.957 15 C 0.040 3.960 16 N -0.907 5.907 17 Si 0.931 3.069 18 H -0.284 1.284 19 H -0.278 1.278 20 H -0.269 1.269 21 C 0.169 3.831 22 C 0.102 3.898 23 C -0.143 4.143 24 C -0.089 4.089 25 C -0.169 4.169 26 C 0.071 3.929 27 N -0.496 5.496 28 C -0.128 4.128 29 H 0.057 0.943 30 H 0.110 0.890 31 H 0.049 0.951 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.135 0.865 37 H 0.032 0.968 38 H 0.026 0.974 39 H 0.265 0.735 40 H 0.083 0.917 41 H 0.108 0.892 42 H 0.136 0.864 43 H 0.155 0.845 44 H 0.165 0.835 45 H 0.170 0.830 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.871 -3.893 -4.205 5.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.255 6.255 4 C 0.063 3.937 5 C -0.205 4.205 6 C -0.101 4.101 7 C -0.142 4.142 8 C -0.107 4.107 9 C 0.343 3.657 10 O -0.448 6.448 11 N -0.315 5.315 12 C 0.129 3.871 13 C -0.555 4.555 14 H 0.061 0.939 15 C -0.161 4.161 16 N -0.546 5.546 17 Si 0.757 3.243 18 H -0.210 1.210 19 H -0.203 1.203 20 H -0.194 1.194 21 C 0.046 3.954 22 C -0.037 4.037 23 C -0.163 4.163 24 C -0.115 4.115 25 C -0.189 4.189 26 C -0.086 4.086 27 N -0.206 5.206 28 C -0.147 4.147 29 H 0.076 0.924 30 H 0.129 0.871 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.090 0.910 34 H 0.178 0.822 35 H 0.188 0.812 36 H 0.153 0.847 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.101 0.899 41 H 0.126 0.874 42 H 0.154 0.846 43 H 0.173 0.827 44 H 0.183 0.817 45 H 0.187 0.813 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.696 -4.196 -4.723 6.541 hybrid contribution -1.819 0.912 0.194 2.044 sum -0.123 -3.284 -4.529 5.595 Atomic orbital electron populations 1.21817 0.92200 1.04225 1.02475 1.23088 0.96606 0.80823 1.02503 1.86153 1.19053 1.31509 1.88743 1.18992 0.83053 0.93984 0.97691 1.21675 0.94394 0.98290 1.06173 1.21179 0.94487 0.97012 0.97395 1.21207 0.99760 0.91603 1.01638 1.19703 0.93340 0.93679 1.04001 1.18619 0.81365 0.85340 0.80386 1.90703 1.34527 1.80862 1.38710 1.48098 1.34968 1.12510 1.35931 1.19313 0.82904 0.96803 0.88097 1.21242 0.91833 1.37637 1.04817 0.93895 1.25326 1.00929 0.94978 0.94913 1.69984 1.27954 1.42044 1.14590 0.85962 0.81048 0.78839 0.78430 1.21039 1.20349 1.19358 1.20268 0.96038 0.80974 0.98162 1.21563 0.95461 0.95176 0.91459 1.22081 0.95902 0.96134 1.02210 1.21903 0.98364 0.97486 0.93774 1.22429 0.98531 1.00949 0.96959 1.23160 0.93738 0.91783 0.99896 1.67520 1.28971 1.20371 1.03774 1.21265 0.94729 0.97441 1.01276 0.92395 0.87106 0.93179 0.90162 0.90972 0.82164 0.81247 0.84725 0.95030 0.95608 0.92604 0.89897 0.87402 0.84595 0.82700 0.81727 0.81312 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 10.28 71.98 0.74 -2.64 16 2 C 0.04 1.13 5.46 71.98 0.39 1.52 16 3 O -0.34 -13.05 10.13 -92.49 -0.94 -13.99 16 4 C 0.11 4.18 6.68 22.47 0.15 4.33 16 5 C -0.19 -5.51 9.03 22.42 0.20 -5.30 16 6 C -0.08 -2.30 10.03 22.22 0.22 -2.08 16 7 C -0.12 -4.29 9.73 22.53 0.22 -4.07 16 8 C -0.10 -4.49 4.87 -20.10 -0.10 -4.59 16 9 C 0.55 25.83 7.21 86.79 0.63 26.45 16 10 O -0.57 -28.35 16.67 -3.88 -0.06 -28.41 16 11 N -0.59 -26.30 2.44 -833.90 -2.04 -28.34 16 12 C 0.25 12.11 4.72 85.63 0.40 12.51 16 13 C -0.52 -26.55 6.03 25.60 0.15 -26.39 16 14 H 0.04 2.35 7.14 -2.91 -0.02 2.32 16 15 C 0.04 2.09 5.46 84.66 0.46 2.56 16 16 N -0.91 -49.37 13.29 21.45 0.28 -49.08 16 17 Si 0.93 42.47 29.54 68.60 2.03 44.49 16 18 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 21 C 0.17 6.70 5.72 85.63 0.49 7.19 16 22 C 0.10 4.05 5.90 42.55 0.25 4.30 16 23 C -0.14 -5.12 8.78 22.36 0.20 -4.92 16 24 C -0.09 -2.71 10.18 22.47 0.23 -2.48 16 25 C -0.17 -4.73 10.11 22.36 0.23 -4.50 16 26 C 0.07 2.35 11.18 84.67 0.95 3.30 16 27 N -0.50 -20.27 10.27 -183.89 -1.89 -22.16 16 28 C -0.13 -5.80 7.54 22.63 0.17 -5.63 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 1.64 7.66 -2.39 -0.02 1.62 16 33 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 34 H 0.16 3.42 6.28 -2.91 -0.02 3.40 16 35 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 37 H 0.03 1.66 5.59 -2.38 -0.01 1.65 16 38 H 0.03 1.29 7.95 -2.39 -0.02 1.27 16 39 H 0.26 13.84 8.31 -92.70 -0.77 13.07 16 40 H 0.08 3.31 7.50 -2.39 -0.02 3.29 16 41 H 0.11 3.71 7.83 -2.39 -0.02 3.69 16 42 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 43 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 44 H 0.17 3.23 8.06 -2.91 -0.02 3.21 16 45 H 0.17 4.52 8.06 -2.91 -0.02 4.50 16 46 H 0.14 7.08 4.85 -2.91 -0.01 7.06 16 Total: -1.00 -70.97 386.12 4.36 -66.61 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: 0.99 Total: 31.31 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.99 Total: -0.43 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -3.64 Total: -99.58 kcal Atomic # 8 Polarization: -41.40 SS G_CDS: -1.00 Total: -42.40 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -70.97 4.36 -66.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069700494.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.239 kcal (2) G-P(sol) polarization free energy of solvation -70.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds