Wall clock time and date at job start Tue Mar 31 2020 05:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38048 * 120.05978 * 2 1 4 4 C 1.38289 * 120.11932 * 179.97438 * 3 2 1 5 5 C 1.38342 * 120.23334 * 0.02562 * 4 3 2 6 6 C 1.38000 * 120.11931 * 359.74838 * 5 4 3 7 7 C 1.39274 * 120.05779 * 179.97438 * 2 1 3 8 8 C 1.48468 * 120.11710 * 0.02562 * 7 2 1 9 9 N 1.34046 * 126.67375 * 359.96887 * 8 7 2 10 10 N 1.28986 * 107.26405 * 179.76484 * 9 8 7 11 11 N 1.28725 * 108.94877 * 0.42489 * 10 9 8 12 12 C 1.46504 * 125.34602 * 179.82679 * 11 10 9 13 13 C 1.52991 * 109.47163 * 269.70112 * 12 11 10 14 14 C 1.50704 * 109.47015 * 179.97438 * 13 12 11 15 15 O 1.21288 * 120.00006 * 359.97438 * 14 13 12 16 16 N 1.34776 * 120.00120 * 179.97438 * 14 13 12 17 17 C 1.37093 * 120.00513 * 179.97438 * 16 14 13 18 18 H 1.08007 * 119.99659 * 322.48529 * 17 16 14 19 19 C 1.38948 * 120.00369 * 142.47600 * 17 16 14 20 20 N 1.31406 * 120.00264 * 157.59269 * 19 17 16 21 21 Si 1.86805 * 119.99752 * 337.59483 * 19 17 16 22 22 H 1.48502 * 109.47011 * 95.70589 * 21 19 17 23 23 H 1.48505 * 109.46984 * 215.70094 * 21 19 17 24 24 H 1.48493 * 109.47374 * 335.70934 * 21 19 17 25 25 C 1.46509 * 119.99684 * 359.97438 * 16 14 13 26 26 C 1.47203 * 109.46935 * 83.79715 * 25 16 14 27 27 N 9.17361 * 73.36886 * 149.17869 * 2 1 3 28 28 N 1.28874 * 109.31612 * 359.56741 * 11 10 9 29 29 H 1.08997 * 109.47415 * 270.02883 * 1 2 3 30 30 H 1.09000 * 109.46743 * 30.02735 * 1 2 3 31 31 H 1.09006 * 109.47191 * 150.02222 * 1 2 3 32 32 H 1.08003 * 119.94409 * 359.96806 * 3 2 1 33 33 H 1.07995 * 119.88639 * 179.97438 * 4 3 2 34 34 H 1.08001 * 119.94089 * 180.02562 * 5 4 3 35 35 H 1.08004 * 120.06635 * 180.27954 * 6 5 4 36 36 H 1.08999 * 109.47093 * 149.69325 * 12 11 10 37 37 H 1.09001 * 109.46539 * 29.70069 * 12 11 10 38 38 H 1.09001 * 109.47358 * 299.99455 * 13 12 11 39 39 H 1.08999 * 109.47758 * 59.99620 * 13 12 11 40 40 H 0.97000 * 120.00062 * 179.97438 * 20 19 17 41 41 H 1.09003 * 109.46587 * 203.79446 * 25 16 14 42 42 H 1.08996 * 109.47129 * 323.79588 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1948 0.0000 4 6 3.5814 1.1962 0.0005 5 6 4.2792 0.0017 0.0005 6 6 3.5979 -1.1983 0.0052 7 6 2.2046 -1.2054 0.0005 8 6 1.4662 -2.4935 0.0005 9 7 0.1353 -2.6533 0.0006 10 7 -0.0979 -3.9219 -0.0045 11 7 1.0240 -4.5532 0.0013 12 6 1.1766 -6.0102 0.0019 13 6 1.2297 -6.5168 1.4445 14 6 1.3861 -8.0157 1.4451 15 8 1.4484 -8.6194 0.3949 16 7 1.4566 -8.6855 2.6125 17 6 1.5984 -10.0491 2.6131 18 1 1.0870 -10.6455 1.8719 19 6 2.3999 -10.6639 3.5672 20 7 2.2121 -11.9296 3.8662 21 14 3.7445 -9.6911 4.4247 22 1 3.2337 -9.1773 5.7210 23 1 4.9146 -10.5725 4.6681 24 1 4.1539 -8.5502 3.5669 25 6 1.3819 -7.9563 3.8810 26 6 -0.0290 -7.7256 4.2319 27 7 -1.1185 -7.5485 4.5036 28 7 1.9919 -3.7023 0.0010 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5135 32 1 1.6586 2.1302 -0.0005 33 1 4.1186 2.1331 0.0001 34 1 5.3592 0.0084 0.0014 35 1 4.1435 -2.1304 0.0098 36 1 2.0995 -6.2790 -0.5119 37 1 0.3293 -6.4644 -0.5118 38 1 2.0770 -6.0627 1.9582 39 1 0.3067 -6.2480 1.9583 40 1 2.7719 -12.3589 4.5320 41 1 1.8603 -8.5424 4.6657 42 1 1.8925 -6.9986 3.7802 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069811177.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:28 Heat of formation + Delta-G solvation = 169.128057 kcal Electronic energy + Delta-G solvation = -27966.647011 eV Core-core repulsion = 23951.246928 eV Total energy + Delta-G solvation = -4015.400083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.35308 -39.62519 -39.43666 -36.56566 -35.71102 -34.87446 -33.61766 -33.17334 -32.46477 -31.79464 -30.31886 -27.97515 -27.24916 -26.68593 -24.62965 -24.23777 -22.72750 -21.71346 -21.22596 -19.45197 -18.73131 -18.01123 -17.21954 -17.05712 -16.75380 -15.99102 -15.68095 -15.61241 -15.50951 -15.13641 -14.25737 -14.14008 -14.08570 -13.87179 -13.74228 -13.50494 -13.39603 -12.95820 -12.80105 -12.66523 -12.61284 -12.43143 -12.31027 -12.00366 -11.87248 -11.70278 -11.64479 -11.40322 -11.33525 -11.06190 -11.02294 -10.82733 -10.65052 -10.60912 -10.18132 -9.46326 -9.07536 -9.02825 -8.75902 -8.26739 -6.65960 -4.28981 0.57830 1.09742 1.23406 1.81539 2.29756 2.77274 2.84611 2.97086 3.02102 3.10755 3.27215 3.54179 3.58343 3.87784 4.05912 4.10753 4.29361 4.54851 4.58523 4.61955 4.69921 4.75239 4.87137 5.02995 5.03106 5.14154 5.19287 5.25537 5.35277 5.44794 5.49821 5.53448 5.58900 5.61648 5.66345 5.68365 5.78422 6.05651 6.13854 6.19789 6.23712 6.40110 6.66303 7.15357 7.81123 7.90800 8.10217 8.28057 8.58973 8.95272 9.27470 10.44899 Molecular weight = 340.14amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.002530 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.588983 B =11066.468391 C =11537.237403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.042 4.042 3 C -0.127 4.127 4 C -0.100 4.100 5 C -0.131 4.131 6 C -0.077 4.077 7 C -0.016 4.016 8 C 0.204 3.796 9 N -0.279 5.279 10 N -0.058 5.058 11 N -0.127 5.127 12 C 0.145 3.855 13 C -0.162 4.162 14 C 0.481 3.519 15 O -0.546 6.546 16 N -0.454 5.454 17 C -0.328 4.328 18 H 0.113 0.887 19 C 0.065 3.935 20 N -0.847 5.847 21 Si 0.860 3.140 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.255 1.255 25 C 0.177 3.823 26 C 0.201 3.799 27 N -0.433 5.433 28 N -0.296 5.296 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.101 0.899 39 H 0.094 0.906 40 H 0.279 0.721 41 H 0.118 0.882 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.956 23.216 -4.685 24.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.044 4.044 3 C -0.145 4.145 4 C -0.119 4.119 5 C -0.149 4.149 6 C -0.097 4.097 7 C -0.019 4.019 8 C -0.075 4.075 9 N -0.150 5.150 10 N -0.050 5.050 11 N -0.039 5.039 12 C 0.026 3.974 13 C -0.204 4.204 14 C 0.269 3.731 15 O -0.426 6.426 16 N -0.176 5.176 17 C -0.454 4.454 18 H 0.130 0.870 19 C -0.143 4.143 20 N -0.481 5.481 21 Si 0.685 3.315 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.179 1.179 25 C 0.050 3.950 26 C -0.118 4.118 27 N -0.112 5.112 28 N -0.147 5.147 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.120 0.880 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.119 0.881 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.135 0.865 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.873 22.409 -4.738 23.084 hybrid contribution 1.621 0.425 0.720 1.824 sum 4.495 22.834 -4.018 23.616 Atomic orbital electron populations 1.21225 0.90020 1.04394 1.03313 1.20000 0.96928 0.91449 0.96045 1.20992 0.94220 0.97287 1.02012 1.21297 0.94278 0.98281 0.98056 1.21069 1.00199 0.91949 1.01688 1.21217 0.92411 0.99144 0.96970 1.17195 0.92055 0.86726 1.05896 1.23568 0.88603 0.92301 1.03070 1.76025 1.13673 1.06170 1.19100 1.78983 1.11358 0.99785 1.14913 1.50307 1.00732 1.10584 1.42270 1.22177 1.08240 0.67532 0.99478 1.22077 1.05104 0.97065 0.96166 1.19686 0.81849 0.86887 0.84708 1.90630 1.52403 1.69437 1.30100 1.43559 1.65071 1.07574 1.01393 1.19062 1.29872 0.78025 1.18487 0.86973 1.25382 0.96801 0.95648 0.96502 1.69739 1.36683 1.11814 1.29831 0.87203 0.83194 0.81438 0.79651 1.19568 1.20308 1.17870 1.19607 0.84561 0.99499 0.91361 1.29980 0.95853 0.92607 0.93385 1.81129 1.12109 1.09478 1.08449 1.74897 1.18716 0.99117 1.21958 0.90790 0.91845 0.87983 0.85407 0.85684 0.85384 0.84845 0.85335 0.85342 0.88097 0.88759 0.91030 0.86477 0.87372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.19 36.01 0.33 -0.95 16 2 C -0.04 -0.43 5.91 -104.31 -0.62 -1.05 16 3 C -0.13 -1.03 9.69 -39.63 -0.38 -1.42 16 4 C -0.10 -0.73 10.04 -39.52 -0.40 -1.13 16 5 C -0.13 -1.04 10.03 -39.63 -0.40 -1.44 16 6 C -0.08 -0.77 9.70 -39.26 -0.38 -1.16 16 7 C -0.02 -0.18 5.88 -104.89 -0.62 -0.80 16 8 C 0.20 2.80 7.79 -156.30 -1.22 1.58 16 9 N -0.28 -4.06 9.08 32.16 0.29 -3.76 16 10 N -0.06 -0.87 13.23 60.35 0.80 -0.07 16 11 N -0.13 -1.76 3.99 -10.63 -0.04 -1.81 16 12 C 0.14 1.88 5.88 -4.04 -0.02 1.86 16 13 C -0.16 -2.28 4.63 -27.89 -0.13 -2.41 16 14 C 0.48 9.20 7.56 -10.98 -0.08 9.12 16 15 O -0.55 -12.18 15.85 5.55 0.09 -12.09 16 16 N -0.45 -9.35 2.15 -117.92 -0.25 -9.61 16 17 C -0.33 -8.18 9.36 -14.94 -0.14 -8.32 16 18 H 0.11 3.21 7.91 -52.48 -0.42 2.79 16 19 C 0.07 1.59 5.26 -17.47 -0.09 1.50 16 20 N -0.85 -22.28 13.96 55.50 0.77 -21.50 16 21 Si 0.86 17.16 25.05 -169.99 -4.26 12.90 16 22 H -0.27 -4.89 6.69 56.52 0.38 -4.51 16 23 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.25 -4.79 7.11 56.52 0.40 -4.38 16 25 C 0.18 2.98 4.27 -6.82 -0.03 2.95 16 26 C 0.20 3.62 15.00 -20.73 -0.31 3.31 16 27 N -0.43 -8.49 18.54 42.18 0.78 -7.71 16 28 N -0.30 -4.14 11.85 32.17 0.38 -3.76 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.10 1.17 5.15 -51.93 -0.27 0.91 16 32 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 33 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.13 1.28 7.88 -52.48 -0.41 0.87 16 36 H 0.13 1.56 8.10 -51.93 -0.42 1.14 16 37 H 0.13 1.61 8.10 -51.93 -0.42 1.19 16 38 H 0.10 1.23 7.42 -51.93 -0.39 0.84 16 39 H 0.09 1.31 7.48 -51.93 -0.39 0.92 16 40 H 0.28 6.76 8.31 -40.82 -0.34 6.42 16 41 H 0.12 2.04 3.61 -51.93 -0.19 1.85 16 42 H 0.11 1.34 6.70 -51.93 -0.35 1.00 16 LS Contribution 365.88 15.07 5.51 5.51 Total: -1.00 -30.44 365.88 -4.93 -35.36 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.52 Total: 4.89 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: -4.49 Total: 1.64 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: 2.73 Total: -48.22 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -4.26 Total: 12.90 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.44 -4.93 -35.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069811177.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.493 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds