Wall clock time and date at job start Tue Mar 31 2020 05:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38390 * 119.84778 * 2 1 4 4 C 1.37939 * 120.14082 * 179.69732 * 3 2 1 5 5 C 1.39611 * 119.84958 * 0.62320 * 4 3 2 6 6 C 1.47807 * 120.14156 * 179.67514 * 5 4 3 7 7 O 1.21561 * 120.00131 * 173.73348 * 6 5 4 8 8 N 1.34777 * 120.00067 * 353.74024 * 6 5 4 9 9 C 1.39492 * 120.00133 * 180.02562 * 8 6 5 10 10 N 1.32289 * 119.72877 * 359.97438 * 9 8 6 11 11 C 1.31952 * 121.69337 * 180.02562 * 10 9 8 12 12 C 1.38093 * 120.95411 * 359.97438 * 11 10 9 13 13 C 1.38784 * 119.35867 * 0.29113 * 12 11 10 14 14 C 1.38797 * 118.44511 * 359.46494 * 13 12 11 15 15 O 1.35983 * 120.49446 * 180.25945 * 14 13 12 16 16 C 1.42897 * 117.00007 * 0.26109 * 15 14 13 17 17 C 1.53002 * 109.46773 * 179.97438 * 16 15 14 18 18 C 1.50701 * 109.46663 * 179.97438 * 17 16 15 19 19 H 1.08004 * 120.00341 * 0.02562 * 18 17 16 20 20 C 1.37886 * 119.99856 * 180.02562 * 18 17 16 21 21 N 1.31509 * 119.99883 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00094 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47009 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47326 * 119.99701 * 22 20 18 25 25 H 1.48495 * 109.47243 * 240.00035 * 22 20 18 26 26 C 1.39573 * 119.71057 * 359.39864 * 5 4 3 27 27 C 1.50698 * 120.07253 * 180.29712 * 26 5 4 28 28 C 1.37973 * 119.85127 * 0.27978 * 26 5 4 29 29 H 1.09000 * 109.47077 * 269.97538 * 1 2 3 30 30 H 1.08993 * 109.47403 * 29.97807 * 1 2 3 31 31 H 1.08998 * 109.46957 * 149.98136 * 1 2 3 32 32 H 1.07997 * 119.92561 * 0.02562 * 3 2 1 33 33 H 1.08004 * 120.07118 * 180.31974 * 4 3 2 34 34 H 0.96999 * 120.00117 * 359.97438 * 8 6 5 35 35 H 1.07999 * 119.52691 * 180.02562 * 11 10 9 36 36 H 1.07994 * 120.31778 * 180.02562 * 12 11 10 37 37 H 1.08000 * 120.77869 * 179.72150 * 13 12 11 38 38 H 1.09003 * 109.46908 * 299.99668 * 16 15 14 39 39 H 1.08998 * 109.47432 * 59.99791 * 16 15 14 40 40 H 1.08994 * 109.47439 * 299.99818 * 17 16 15 41 41 H 1.09005 * 109.46986 * 60.00182 * 17 16 15 42 42 H 0.96997 * 120.00527 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.47332 * 83.41061 * 27 26 5 44 44 H 1.09001 * 109.47195 * 203.41466 * 27 26 5 45 45 H 1.09001 * 109.47603 * 323.41007 * 27 26 5 46 46 H 1.08000 * 119.92635 * 179.97438 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5751 1.2074 0.0063 5 6 4.2763 0.0001 -0.0005 6 6 5.7543 0.0002 -0.0010 7 8 6.3623 -1.0468 0.1080 8 7 6.4281 1.1611 -0.1223 9 6 7.8230 1.1612 -0.1234 10 7 8.4792 0.0186 -0.0045 11 6 9.7979 -0.0263 -0.0003 12 6 10.5483 1.1267 -0.1213 13 6 9.9025 2.3491 -0.2428 14 6 8.5147 2.3659 -0.2495 15 8 7.8394 3.5399 -0.3718 16 6 8.6223 4.7288 -0.4962 17 6 7.6949 5.9391 -0.6228 18 6 8.5207 7.1930 -0.7533 19 1 9.5990 7.1326 -0.7471 20 6 7.8995 8.4174 -0.8807 21 7 6.5864 8.4910 -0.8878 22 14 8.9229 9.9715 -1.0433 23 1 10.3654 9.6204 -1.0067 24 1 8.6080 10.6391 -2.3318 25 1 8.6090 10.8907 0.0800 26 6 3.5754 -1.2069 -0.0009 27 6 4.3239 -2.5148 -0.0014 28 6 2.1956 -1.1998 -0.0004 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 1.6521 2.1335 0.0004 33 1 4.1115 2.1448 0.0115 34 1 5.9431 1.9966 -0.2096 35 1 10.2978 -0.9785 0.0983 36 1 11.6271 1.0780 -0.1170 37 1 10.4667 3.2655 -0.3343 38 1 9.2515 4.8434 0.3865 39 1 9.2509 4.6587 -1.3839 40 1 7.0660 5.8243 -1.5055 41 1 7.0661 6.0094 0.2648 42 1 6.1494 9.3522 -0.9778 43 1 4.6068 -2.7720 1.0193 44 1 3.6859 -3.2984 -0.4100 45 1 5.2205 -2.4201 -0.6140 46 1 1.6521 -2.1331 -0.0012 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069844455.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:08 Heat of formation + Delta-G solvation = -11.239048 kcal Electronic energy + Delta-G solvation = -28250.942058 eV Core-core repulsion = 24298.968263 eV Total energy + Delta-G solvation = -3951.973795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.03480 -40.04917 -38.52260 -37.72021 -35.04624 -33.51908 -33.47218 -32.37458 -31.56611 -30.55131 -29.19562 -27.61577 -27.16350 -25.42904 -23.85879 -22.88346 -22.72305 -21.53505 -20.79666 -20.14050 -18.53330 -17.75206 -17.31229 -16.22812 -16.05457 -15.84277 -15.69541 -15.20564 -15.08165 -14.87096 -14.74547 -14.55241 -14.12010 -13.97966 -13.64200 -13.52515 -13.30129 -13.00924 -12.85310 -12.66842 -12.42207 -12.08979 -11.98755 -11.93383 -11.83195 -11.75823 -11.18917 -11.06039 -11.02279 -10.70330 -10.68574 -10.06374 -10.03562 -9.77425 -9.40240 -9.22702 -9.02134 -8.96320 -8.78790 -8.53676 -7.65517 -6.19192 -4.23960 0.64031 1.19126 1.29366 1.44720 2.84020 2.87811 3.20952 3.28196 3.31139 3.52068 3.65334 4.04672 4.32770 4.35086 4.51705 4.63161 4.68457 4.78209 4.94819 5.01507 5.09048 5.12316 5.17896 5.25841 5.31109 5.38089 5.44026 5.47030 5.59527 5.71881 5.76958 5.79505 5.85730 5.89037 6.05210 6.09339 6.10968 6.19748 6.32772 6.35566 6.45056 6.53268 6.64052 6.72876 7.26929 7.33655 7.51338 7.63171 7.84210 8.06896 8.13275 8.34708 8.81382 9.41069 10.92279 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009429 B = 0.002855 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2968.706324 B = 9806.317945 C =12738.046088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.057 4.057 3 C -0.134 4.134 4 C -0.075 4.075 5 C -0.145 4.145 6 C 0.550 3.450 7 O -0.473 6.473 8 N -0.648 5.648 9 C 0.330 3.670 10 N -0.443 5.443 11 C 0.075 3.925 12 C -0.160 4.160 13 C -0.148 4.148 14 C 0.067 3.933 15 O -0.317 6.317 16 C 0.066 3.934 17 C 0.026 3.974 18 C -0.528 4.528 19 H 0.059 0.941 20 C 0.061 3.939 21 N -0.888 5.888 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.017 4.017 27 C -0.122 4.122 28 C -0.135 4.135 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.131 0.869 34 H 0.422 0.578 35 H 0.157 0.843 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.263 0.737 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.097 0.903 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 -18.763 1.862 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.058 4.058 3 C -0.152 4.152 4 C -0.094 4.094 5 C -0.149 4.149 6 C 0.338 3.662 7 O -0.344 6.344 8 N -0.296 5.296 9 C 0.097 3.903 10 N -0.158 5.158 11 C -0.081 4.081 12 C -0.181 4.181 13 C -0.174 4.174 14 C 0.016 3.984 15 O -0.229 6.229 16 C -0.008 4.008 17 C -0.011 4.011 18 C -0.566 4.566 19 H 0.077 0.923 20 C -0.141 4.141 21 N -0.526 5.526 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.018 4.018 27 C -0.178 4.178 28 C -0.153 4.153 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.148 0.852 33 H 0.148 0.852 34 H 0.261 0.739 35 H 0.174 0.826 36 H 0.152 0.848 37 H 0.163 0.837 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.073 0.927 43 H 0.094 0.906 44 H 0.075 0.925 45 H 0.115 0.885 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.503 -20.129 2.004 21.248 hybrid contribution 1.003 2.442 -0.209 2.649 sum -5.500 -17.686 1.795 18.608 Atomic orbital electron populations 1.20865 0.90877 1.03115 1.02643 1.20149 0.96323 0.93095 0.96198 1.21001 0.93811 0.97969 1.02389 1.21407 0.94771 0.97074 0.96108 1.19713 0.92190 0.94193 1.08768 1.18392 0.87096 0.83483 0.77230 1.90800 1.69226 1.29747 1.44666 1.43380 1.03535 1.11320 1.71400 1.17768 0.84442 0.87393 1.00709 1.67624 1.10027 1.24549 1.13606 1.22415 0.88246 0.98453 0.99030 1.21895 1.01277 0.92552 1.02401 1.21609 0.92594 1.00011 1.03199 1.19598 0.91533 0.86861 1.00445 1.86096 1.36994 1.13047 1.86786 1.23400 0.95833 0.81902 0.99661 1.19132 0.94819 0.88364 0.98769 1.20983 0.93027 0.90840 1.51725 0.92290 1.24979 0.95009 0.99271 0.94845 1.69967 1.07967 1.25370 1.49339 0.86434 0.80335 0.82811 0.77837 1.19628 1.20792 1.20800 1.20008 0.93365 0.94749 0.93722 1.21099 1.00866 0.92082 1.03726 1.20902 0.93068 0.97830 1.03519 0.90768 0.91114 0.91334 0.85168 0.85154 0.73868 0.82594 0.84784 0.83721 0.92920 0.92922 0.95339 0.95347 0.92694 0.90609 0.92529 0.88503 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.01 36.01 0.36 -0.42 16 2 C -0.06 -0.54 5.89 -104.53 -0.62 -1.16 16 3 C -0.13 -1.36 9.68 -39.64 -0.38 -1.75 16 4 C -0.07 -0.87 9.53 -39.18 -0.37 -1.24 16 5 C -0.15 -1.91 5.87 -104.97 -0.62 -2.53 16 6 C 0.55 8.49 7.67 -12.35 -0.09 8.39 16 7 O -0.47 -8.20 11.59 5.31 0.06 -8.14 16 8 N -0.65 -10.03 5.34 -12.16 -0.06 -10.10 16 9 C 0.33 5.57 7.44 -154.50 -1.15 4.42 16 10 N -0.44 -7.43 7.87 -12.24 -0.10 -7.52 16 11 C 0.08 1.02 11.17 -17.55 -0.20 0.82 16 12 C -0.16 -2.00 10.10 -39.43 -0.40 -2.39 16 13 C -0.15 -2.16 9.14 -39.17 -0.36 -2.51 16 14 C 0.07 1.13 6.72 -38.91 -0.26 0.87 16 15 O -0.32 -5.86 9.38 -19.69 -0.18 -6.04 16 16 C 0.07 1.30 4.70 37.16 0.17 1.47 16 17 C 0.03 0.64 5.34 -27.88 -0.15 0.50 16 18 C -0.53 -14.04 9.11 -34.44 -0.31 -14.35 16 19 H 0.06 1.50 7.74 -52.48 -0.41 1.10 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 22 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C -0.02 -0.21 5.91 -104.22 -0.62 -0.82 16 27 C -0.12 -1.37 8.74 36.00 0.31 -1.06 16 28 C -0.14 -1.34 9.31 -39.64 -0.37 -1.71 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.07 0.38 8.08 -51.93 -0.42 -0.04 16 32 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 33 H 0.13 1.39 6.46 -52.48 -0.34 1.05 16 34 H 0.42 5.93 6.12 -40.82 -0.25 5.68 16 35 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.15 1.96 6.44 -52.49 -0.34 1.62 16 38 H 0.05 0.99 7.69 -51.93 -0.40 0.59 16 39 H 0.05 0.99 7.71 -51.93 -0.40 0.59 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 43 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.50 8.04 -51.93 -0.42 0.08 16 45 H 0.10 1.30 5.85 -51.93 -0.30 0.99 16 46 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -31.85 385.42 -10.11 -41.96 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -6.21 Total: 5.01 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -5.14 Total: -11.89 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.58 Total: -42.29 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: -0.12 Total: -14.19 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.85 -10.11 -41.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069844455.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.725 kcal (2) G-P(sol) polarization free energy of solvation -31.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds