Wall clock time and date at job start Tue Mar 31 2020 05:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47185 * 2 1 4 4 C 1.38369 * 119.85045 * 89.99909 * 3 2 1 5 5 C 1.37949 * 120.14493 * 180.02562 * 4 3 2 6 6 C 1.39595 * 119.85239 * 0.02562 * 5 4 3 7 7 C 1.47817 * 120.14422 * 179.97438 * 6 5 4 8 8 O 1.21559 * 119.99862 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99705 * 179.97438 * 7 6 5 10 10 C 1.39488 * 119.99867 * 180.02562 * 9 7 6 11 11 N 1.32295 * 119.73006 * 0.29466 * 10 9 7 12 12 C 1.31958 * 121.68732 * 180.28651 * 11 10 9 13 13 C 1.38081 * 120.95559 * 359.70613 * 12 11 10 14 14 C 1.38784 * 119.36019 * 359.97438 * 13 12 11 15 15 C 1.38787 * 118.45039 * 359.97438 * 14 13 12 16 16 O 1.35973 * 120.50046 * 179.97438 * 15 14 13 17 17 C 1.42906 * 116.99587 * 0.02562 * 16 15 14 18 18 C 1.53006 * 109.46748 * 179.97438 * 17 16 15 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 16 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00305 * 179.97438 * 21 19 18 23 23 Si 1.86805 * 119.99832 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46901 * 89.99815 * 23 21 19 25 25 H 1.48488 * 109.47487 * 210.00255 * 23 21 19 26 26 H 1.48503 * 109.47026 * 330.00635 * 23 21 19 27 27 C 1.39591 * 119.70893 * 0.25171 * 6 5 4 28 28 C 1.37951 * 119.85041 * 359.46961 * 27 6 5 29 29 H 1.09003 * 109.46686 * 299.99959 * 1 2 3 30 30 H 1.09000 * 109.46806 * 59.99931 * 1 2 3 31 31 H 1.08995 * 109.46912 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47496 * 240.00470 * 2 1 3 33 33 H 1.08997 * 109.47531 * 120.00022 * 2 1 3 34 34 H 1.07991 * 119.92607 * 0.02562 * 4 3 2 35 35 H 1.08008 * 120.07642 * 180.02562 * 5 4 3 36 36 H 0.96999 * 119.99975 * 0.02562 * 9 7 6 37 37 H 1.08000 * 119.51842 * 179.72584 * 12 11 10 38 38 H 1.07997 * 120.31623 * 179.97438 * 13 12 11 39 39 H 1.08002 * 120.77497 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.47490 * 59.99648 * 17 16 15 41 41 H 1.09001 * 109.47232 * 299.99002 * 17 16 15 42 42 H 1.08993 * 109.46955 * 299.99993 * 18 17 16 43 43 H 1.09000 * 109.47050 * 59.99822 * 18 17 16 44 44 H 0.97002 * 120.00008 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.07323 * 179.73806 * 27 6 5 46 46 H 1.07994 * 119.92708 * 180.25211 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2619 2.0701 1.2001 5 6 2.7213 3.3709 1.2072 6 6 2.9539 4.0322 0.0001 7 6 3.4456 5.4262 0.0001 8 8 3.6486 5.9990 1.0529 9 7 3.6698 6.0617 -1.1671 10 6 4.1342 7.3770 -1.1671 11 7 4.3585 7.9936 -0.0183 12 6 4.7925 9.2389 0.0269 13 6 5.0365 9.9485 -1.1323 14 6 4.8214 9.3397 -2.3608 15 6 4.3657 8.0289 -2.3784 16 8 4.1406 7.3923 -3.5586 17 6 4.3947 8.1331 -4.7540 18 6 4.0872 7.2583 -5.9711 19 6 4.3546 8.0396 -7.2316 20 1 4.7080 9.0583 -7.1708 21 6 4.1470 7.4543 -8.4626 22 7 4.3799 8.1363 -9.5627 23 14 3.5350 5.6925 -8.5679 24 1 2.0502 5.6849 -8.5910 25 1 4.0527 5.0619 -9.8085 26 1 4.0155 4.9303 -7.3874 27 6 2.7148 3.3733 -1.2071 28 6 2.2610 2.0706 -1.2000 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.0811 1.5575 2.1332 35 1 2.9005 3.8765 2.1446 36 1 3.5081 5.6045 -2.0071 37 1 4.9597 9.7098 0.9843 38 1 5.3912 10.9674 -1.0833 39 1 5.0051 9.8733 -3.2816 40 1 5.4419 8.4346 -4.7789 41 1 3.7607 9.0195 -4.7739 42 1 4.7214 6.3721 -5.9510 43 1 3.0401 6.9564 -5.9463 44 1 4.2342 7.7244 -10.4287 45 1 2.8888 3.8807 -2.1444 46 1 2.0794 1.5582 -2.1332 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069892393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:41 Heat of formation + Delta-G solvation = -11.914363 kcal Electronic energy + Delta-G solvation = -27966.131615 eV Core-core repulsion = 24014.128536 eV Total energy + Delta-G solvation = -3952.003079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.06112 -40.01747 -38.69300 -37.83256 -34.97616 -34.43464 -33.46662 -31.78083 -31.33397 -30.93834 -30.11560 -28.97281 -25.69809 -25.16862 -23.59592 -22.99943 -22.70647 -21.85142 -20.77142 -20.20643 -18.77914 -17.95001 -17.43580 -16.65385 -16.25626 -15.91846 -15.76289 -15.66921 -15.09533 -15.02880 -14.83285 -14.29955 -14.14875 -14.04956 -13.93599 -13.74119 -13.61457 -13.45713 -13.11411 -12.73748 -12.58741 -12.25749 -12.11098 -12.08580 -11.63199 -11.41390 -11.26990 -11.15793 -11.00894 -10.79304 -10.44128 -10.27769 -10.17614 -9.95581 -9.46539 -9.30149 -9.26797 -9.12621 -9.01630 -8.71368 -7.74552 -6.22008 -4.23839 0.53545 1.10218 1.23053 1.38379 2.75262 2.78206 3.20606 3.28524 3.31177 3.40220 3.60365 3.98555 4.22787 4.30136 4.41221 4.44565 4.67412 4.68545 4.80490 4.89548 4.95853 5.02469 5.07567 5.11757 5.14598 5.17310 5.24742 5.41091 5.51670 5.53381 5.60183 5.72383 5.74610 5.76834 5.82928 5.98291 6.02195 6.07527 6.14471 6.25418 6.25950 6.33993 6.52088 6.60678 6.91393 7.09541 7.17340 7.47671 7.60793 7.98205 8.26639 8.28977 8.78204 9.37546 10.90429 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007558 B = 0.003200 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3703.764121 B = 8746.846712 C =12338.204998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.058 4.058 4 C -0.128 4.128 5 C -0.055 4.055 6 C -0.137 4.137 7 C 0.550 3.450 8 O -0.477 6.477 9 N -0.648 5.648 10 C 0.329 3.671 11 N -0.444 5.444 12 C 0.077 3.923 13 C -0.159 4.159 14 C -0.145 4.145 15 C 0.066 3.934 16 O -0.321 6.321 17 C 0.073 3.927 18 C -0.008 4.008 19 C -0.529 4.529 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.896 5.896 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.263 1.263 27 C -0.082 4.082 28 C -0.124 4.124 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.128 0.872 35 H 0.137 0.863 36 H 0.422 0.578 37 H 0.158 0.842 38 H 0.136 0.864 39 H 0.147 0.853 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.028 0.972 43 H 0.024 0.976 44 H 0.267 0.733 45 H 0.129 0.871 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.264 -11.041 20.628 23.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.127 4.127 3 C -0.058 4.058 4 C -0.146 4.146 5 C -0.074 4.074 6 C -0.140 4.140 7 C 0.337 3.663 8 O -0.348 6.348 9 N -0.297 5.297 10 C 0.096 3.904 11 N -0.159 5.159 12 C -0.080 4.080 13 C -0.180 4.180 14 C -0.172 4.172 15 C 0.015 3.985 16 O -0.234 6.234 17 C -0.001 4.001 18 C -0.045 4.045 19 C -0.567 4.567 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.533 5.533 23 Si 0.707 3.293 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.188 1.188 27 C -0.100 4.100 28 C -0.142 4.142 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.146 0.854 35 H 0.155 0.845 36 H 0.261 0.739 37 H 0.175 0.825 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.046 0.954 43 H 0.042 0.958 44 H 0.076 0.924 45 H 0.147 0.853 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -4.366 -11.353 21.924 25.072 hybrid contribution -0.103 -0.249 -1.699 1.720 sum -4.469 -11.602 20.225 23.741 Atomic orbital electron populations 1.21754 0.94359 1.01930 1.02474 1.20625 0.96452 0.92340 1.03239 1.20165 0.96252 0.96242 0.93167 1.21010 1.01041 0.94670 0.97839 1.21248 0.94612 0.93915 0.97618 1.19893 1.05539 0.93897 0.94716 1.18417 0.78245 0.86022 0.83617 1.90856 1.47374 1.66395 1.30151 1.43338 1.64526 1.11201 1.10591 1.17759 0.99092 0.86259 0.87249 1.67636 1.13058 1.10520 1.24650 1.22442 0.97674 0.89294 0.98542 1.21918 1.02152 1.01509 0.92389 1.21637 1.01793 0.93626 1.00119 1.19536 0.99943 0.92581 0.86434 1.86041 1.82378 1.42592 1.12344 1.23153 1.00173 0.95815 0.80932 1.19586 0.97555 0.96253 0.91104 1.20806 1.46512 1.01038 0.88349 0.90714 1.24934 0.94549 0.98014 0.95464 1.69886 1.48354 1.37326 0.97772 0.86759 0.79501 0.85068 0.77935 1.20026 1.21124 1.18793 1.21403 0.96525 0.94945 0.97146 1.21008 1.00563 0.94602 0.98008 0.92439 0.92320 0.92210 0.90649 0.90748 0.85370 0.84526 0.73932 0.82484 0.84613 0.83527 0.92267 0.92289 0.95368 0.95807 0.92354 0.85282 0.85225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.09 -0.55 6.06 -27.88 -0.17 -0.72 16 3 C -0.06 -0.49 5.14 -104.53 -0.54 -1.02 16 4 C -0.13 -1.12 9.68 -39.64 -0.38 -1.50 16 5 C -0.06 -0.60 9.60 -39.18 -0.38 -0.97 16 6 C -0.14 -1.67 5.87 -104.97 -0.62 -2.28 16 7 C 0.55 8.24 7.74 -12.34 -0.10 8.14 16 8 O -0.48 -8.50 14.60 5.31 0.08 -8.42 16 9 N -0.65 -9.59 5.34 -12.16 -0.06 -9.65 16 10 C 0.33 5.40 7.44 -154.50 -1.15 4.25 16 11 N -0.44 -7.36 7.87 -12.24 -0.10 -7.46 16 12 C 0.08 1.03 11.17 -17.55 -0.20 0.83 16 13 C -0.16 -1.93 10.10 -39.44 -0.40 -2.33 16 14 C -0.15 -2.06 9.14 -39.18 -0.36 -2.41 16 15 C 0.07 1.07 6.72 -38.91 -0.26 0.81 16 16 O -0.32 -5.57 9.38 -19.66 -0.18 -5.75 16 17 C 0.07 1.37 4.70 37.16 0.17 1.54 16 18 C -0.01 -0.17 4.41 -27.88 -0.12 -0.29 16 19 C -0.53 -14.20 9.66 -34.44 -0.33 -14.53 16 20 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 21 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 22 N -0.90 -26.40 13.96 55.43 0.77 -25.63 16 23 Si 0.88 20.57 27.47 -169.99 -4.67 15.90 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.26 -5.87 6.54 56.52 0.37 -5.51 16 27 C -0.08 -0.85 9.54 -39.18 -0.37 -1.22 16 28 C -0.12 -1.12 9.68 -39.64 -0.38 -1.51 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 33 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.14 1.46 7.65 -52.48 -0.40 1.05 16 36 H 0.42 5.46 6.08 -40.82 -0.25 5.21 16 37 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.15 1.93 6.44 -52.49 -0.34 1.59 16 40 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 41 H 0.06 1.06 7.70 -51.93 -0.40 0.67 16 42 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 43 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.13 1.20 6.41 -52.49 -0.34 0.86 16 46 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -32.89 387.25 -9.91 -42.80 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.28 Total: 4.14 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -5.31 Total: -11.77 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.61 Total: -42.74 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.11 Total: -14.17 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.67 Total: 15.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.89 -9.91 -42.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069892393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.889 kcal (2) G-P(sol) polarization free energy of solvation -32.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds